Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.50701 * 109.47178 * 293.95230 * 3 2 1 5 5 H 1.08002 * 119.99905 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99990 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00209 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46937 * 89.99830 * 8 6 4 10 10 H 1.48493 * 109.47018 * 210.00248 * 8 6 4 11 11 H 1.48501 * 109.46676 * 330.00080 * 8 6 4 12 12 C 1.46900 * 110.99568 * 123.95652 * 2 1 3 13 13 C 1.52995 * 109.47580 * 66.04412 * 12 2 1 14 14 H 1.09000 * 109.46899 * 305.00243 * 13 12 2 15 15 O 1.42901 * 109.46987 * 64.99694 * 13 12 2 16 16 C 1.52997 * 109.47658 * 184.99717 * 13 12 2 17 17 N 1.46493 * 109.47625 * 179.97438 * 16 13 12 18 18 N 1.28381 * 119.16484 * 270.02422 * 17 16 13 19 19 C 1.30494 * 122.43602 * 179.97438 * 18 17 16 20 20 Cl 1.73599 * 119.77990 * 180.02562 * 19 18 17 21 21 C 1.40590 * 120.43669 * 359.72916 * 19 18 17 22 22 C 1.36570 * 118.30984 * 0.51242 * 21 19 18 23 23 C 1.50706 * 121.09335 * 179.77047 * 22 21 19 24 24 C 1.52990 * 117.49906 * 108.97543 * 23 22 21 25 25 C 1.52997 * 60.03376 * 252.52277 * 24 23 22 26 26 C 1.34670 * 119.15942 * 90.00265 * 17 16 13 27 27 O 1.22069 * 120.33920 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47367 * 296.05008 * 1 2 3 29 29 H 1.09009 * 109.47101 * 56.04692 * 1 2 3 30 30 H 1.08996 * 109.47588 * 176.04471 * 1 2 3 31 31 H 1.08994 * 109.47033 * 53.95295 * 3 2 1 32 32 H 1.09000 * 109.47048 * 173.95674 * 3 2 1 33 33 H 0.97002 * 120.00136 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46862 * 306.04049 * 12 2 1 35 35 H 1.09005 * 109.46704 * 186.04346 * 12 2 1 36 36 H 0.96695 * 114.00216 * 60.00150 * 15 13 12 37 37 H 1.09005 * 109.46663 * 59.99483 * 16 13 12 38 38 H 1.09004 * 109.46797 * 300.00630 * 16 13 12 39 39 H 1.08008 * 120.84745 * 180.31196 * 21 19 18 40 40 H 1.09002 * 115.55799 * 254.66675 * 23 22 21 41 41 H 1.09002 * 117.50050 * 145.02048 * 24 23 22 42 42 H 1.09003 * 117.50277 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50202 * 107.47963 * 25 24 23 44 44 H 1.09002 * 117.50007 * 252.48136 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0278 3.3490 -1.5289 7 7 2.7138 4.0011 -0.6158 8 14 1.5828 4.1869 -3.1382 9 1 0.2710 4.8679 -2.9954 10 1 2.6254 5.1874 -3.4801 11 1 1.4983 3.1711 -4.2181 12 6 1.9953 -0.7661 1.1376 13 6 1.6313 -2.2426 0.9704 14 1 0.5531 -2.3388 0.8432 15 8 2.2954 -2.7696 -0.1800 16 6 2.0698 -3.0200 2.2131 17 7 1.7207 -4.4337 2.0532 18 7 0.5734 -4.8444 2.4573 19 6 0.1965 -6.0888 2.3461 20 17 -1.3716 -6.5688 2.9156 21 6 1.0494 -7.0419 1.7625 22 6 2.2780 -6.6323 1.3289 23 6 3.2441 -7.6021 0.6987 24 6 3.4957 -7.4722 -0.8048 25 6 2.6716 -8.6434 -0.2663 26 6 2.6112 -5.2694 1.4857 27 8 3.6950 -4.8525 1.1093 28 1 -0.3634 0.4513 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0251 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.9884 4.9173 -0.7778 34 1 1.5610 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 3.2599 -2.7168 -0.1360 37 1 1.5632 -2.6179 3.0905 38 1 3.1481 -2.9237 2.3402 39 1 0.7422 -8.0725 1.6626 40 1 4.0834 -7.9040 1.3253 41 1 4.5006 -7.6886 -1.1674 42 1 2.9629 -6.6849 -1.3381 43 1 1.5965 -8.6265 -0.4450 44 1 3.1341 -9.6303 -0.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876499336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = 11.201610 kcal Electronic energy + Delta-G solvation = -27536.381659 eV Core-core repulsion = 23517.522203 eV Total energy + Delta-G solvation = -4018.859456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44801 -38.46401 -38.28412 -37.49749 -37.02982 -35.59182 -34.21809 -32.54364 -31.64687 -30.16895 -27.57173 -26.83616 -25.79380 -24.70881 -23.79969 -22.57324 -21.92032 -21.17786 -20.28540 -18.86523 -17.98402 -17.10096 -16.79324 -16.51847 -16.05379 -15.85458 -15.63620 -15.03001 -14.82897 -14.67946 -14.29251 -13.86815 -13.74884 -13.72359 -13.55947 -12.77019 -12.53423 -12.39779 -12.13516 -12.03760 -11.90503 -11.83272 -11.45318 -11.39315 -11.22875 -11.18914 -10.93511 -10.82409 -10.71707 -10.71173 -10.46525 -10.29668 -10.02017 -9.97229 -9.68813 -9.17748 -8.57689 -8.44264 -7.24554 -6.03182 -4.04189 0.10129 1.03024 1.17578 2.19216 2.99124 3.32342 3.38462 3.39069 3.43795 3.74753 4.03119 4.29886 4.35347 4.50015 4.53979 4.57441 4.60290 4.70631 4.87421 5.11527 5.15072 5.20448 5.28418 5.31484 5.34845 5.36547 5.45859 5.52223 5.60440 5.66875 5.72990 5.85694 5.95742 6.12592 6.20641 6.31541 6.73699 7.24045 7.29662 7.31253 7.75776 7.78628 7.92952 8.07245 8.16904 8.52624 9.03518 9.60085 11.07812 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.002500 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.686631 B =11199.296074 C =12111.498636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.029 3.971 13 C 0.101 3.899 14 H 0.103 0.897 15 O -0.541 6.541 16 C 0.075 3.925 17 N -0.320 5.320 18 N -0.206 5.206 19 C 0.099 3.901 20 Cl 0.002 6.998 21 C -0.066 4.066 22 C -0.106 4.106 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.173 4.173 26 C 0.490 3.510 27 O -0.506 6.506 28 H 0.011 0.989 29 H 0.076 0.924 30 H 0.045 0.955 31 H -0.009 1.009 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.377 0.623 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -27.059 8.652 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.101 4.101 13 C 0.039 3.961 14 H 0.121 0.879 15 O -0.346 6.346 16 C -0.045 4.045 17 N -0.142 5.142 18 N -0.033 5.033 19 C -0.097 4.097 20 Cl 0.030 6.970 21 C -0.090 4.090 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.190 4.190 25 C -0.210 4.210 26 C 0.287 3.713 27 O -0.381 6.381 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.008 0.992 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.225 0.775 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.343 -26.127 8.176 27.580 hybrid contribution 0.130 0.490 0.102 0.518 sum -3.213 -25.637 8.279 27.131 Atomic orbital electron populations 1.22268 0.88910 0.99499 1.00623 1.62010 1.06877 1.17586 1.38809 1.19753 0.95353 0.81329 0.96736 1.21156 1.34730 0.96874 1.01680 0.91803 1.24988 0.95273 0.97348 0.97037 1.69957 1.38405 1.11451 1.34169 0.86489 0.77960 0.79212 0.83741 1.20752 1.21243 1.19711 1.22634 1.00968 0.92616 0.93922 1.22310 0.98404 0.91752 0.83594 0.87908 1.86571 1.23983 1.83628 1.40405 1.23030 1.03877 0.75401 1.02212 1.46567 1.09046 1.11697 1.46841 1.70302 1.03689 1.17422 1.11918 1.21816 0.92160 0.89807 1.05912 1.98423 1.21575 1.89418 1.87599 1.21950 0.91995 1.01030 0.93979 1.20598 0.95617 0.93443 1.02221 1.20510 0.99683 0.98660 0.93266 1.22948 1.01790 1.00184 0.94079 1.23111 1.00460 0.94671 1.02762 1.17721 0.85809 0.87106 0.80624 1.90966 1.21275 1.77531 1.48353 0.97101 0.90534 0.93659 0.99165 0.95239 0.92932 0.94871 0.90616 0.77458 0.87131 0.86857 0.82419 0.85833 0.87975 0.88328 0.88460 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.07 0.55 1.25 16 2 N -0.53 -11.44 4.70 -244.38 -1.15 -12.59 16 3 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 4 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.03 0.48 4.59 -3.83 -0.02 0.47 16 13 C 0.10 1.48 3.19 -26.74 -0.09 1.39 16 14 H 0.10 1.60 6.34 -51.93 -0.33 1.27 16 15 O -0.54 -9.06 12.07 -45.14 -0.54 -9.60 16 16 C 0.08 0.89 5.32 -4.05 -0.02 0.87 16 17 N -0.32 -3.99 3.18 -63.33 -0.20 -4.19 16 18 N -0.21 -2.43 10.87 33.01 0.36 -2.07 16 19 C 0.10 0.98 7.37 -17.23 -0.13 0.85 16 20 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 21 C -0.07 -0.55 9.19 -39.30 -0.36 -0.92 16 22 C -0.11 -1.10 5.49 -104.11 -0.57 -1.67 16 23 C -0.10 -0.88 5.58 -91.74 -0.51 -1.39 16 24 C -0.15 -1.34 10.23 -26.74 -0.27 -1.61 16 25 C -0.17 -1.11 9.81 -26.70 -0.26 -1.37 16 26 C 0.49 6.39 6.95 -15.19 -0.11 6.29 16 27 O -0.51 -7.63 14.88 -5.06 -0.08 -7.71 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 1.64 6.76 -51.92 -0.35 1.29 16 30 H 0.04 0.79 6.37 -51.93 -0.33 0.46 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.38 5.81 8.38 45.56 0.38 6.19 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.28 7.37 -51.93 -0.38 0.90 16 39 H 0.16 0.83 7.73 -52.48 -0.41 0.42 16 40 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 0.57 7.76 -51.93 -0.40 0.17 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -32.92 381.57 -9.39 -42.31 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.53 Total: 2.89 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.20 Total: -4.02 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.26 Total: -44.99 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.62 Total: -17.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.51 Total: -1.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.92 -9.39 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876499336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.508 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds