Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.50701 * 109.47178 * 293.95230 * 3 2 1 5 5 H 1.08002 * 119.99905 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99990 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00209 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46937 * 89.99830 * 8 6 4 10 10 H 1.48493 * 109.47018 * 210.00248 * 8 6 4 11 11 H 1.48501 * 109.46676 * 330.00080 * 8 6 4 12 12 C 1.46900 * 110.99568 * 123.95652 * 2 1 3 13 13 C 1.52995 * 109.47580 * 66.04412 * 12 2 1 14 14 H 1.09000 * 109.46899 * 305.00243 * 13 12 2 15 15 O 1.42901 * 109.46987 * 64.99694 * 13 12 2 16 16 C 1.52997 * 109.47658 * 184.99717 * 13 12 2 17 17 N 1.46493 * 109.47625 * 179.97438 * 16 13 12 18 18 N 1.28381 * 119.16484 * 270.02422 * 17 16 13 19 19 C 1.30494 * 122.43602 * 179.97438 * 18 17 16 20 20 Cl 1.73599 * 119.77990 * 180.02562 * 19 18 17 21 21 C 1.40590 * 120.43669 * 359.72916 * 19 18 17 22 22 C 1.36570 * 118.30984 * 0.51242 * 21 19 18 23 23 C 1.50706 * 121.09335 * 179.77047 * 22 21 19 24 24 C 1.52990 * 117.49906 * 108.97543 * 23 22 21 25 25 C 1.52997 * 60.03376 * 252.52277 * 24 23 22 26 26 C 1.34670 * 119.15942 * 90.00265 * 17 16 13 27 27 O 1.22069 * 120.33920 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47367 * 296.05008 * 1 2 3 29 29 H 1.09009 * 109.47101 * 56.04692 * 1 2 3 30 30 H 1.08996 * 109.47588 * 176.04471 * 1 2 3 31 31 H 1.08994 * 109.47033 * 53.95295 * 3 2 1 32 32 H 1.09000 * 109.47048 * 173.95674 * 3 2 1 33 33 H 0.97002 * 120.00136 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46862 * 306.04049 * 12 2 1 35 35 H 1.09005 * 109.46704 * 186.04346 * 12 2 1 36 36 H 0.96695 * 114.00216 * 60.00150 * 15 13 12 37 37 H 1.09005 * 109.46663 * 59.99483 * 16 13 12 38 38 H 1.09004 * 109.46797 * 300.00630 * 16 13 12 39 39 H 1.08008 * 120.84745 * 180.31196 * 21 19 18 40 40 H 1.09002 * 115.55799 * 254.66675 * 23 22 21 41 41 H 1.09002 * 117.50050 * 145.02048 * 24 23 22 42 42 H 1.09003 * 117.50277 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50202 * 107.47963 * 25 24 23 44 44 H 1.09002 * 117.50007 * 252.48136 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0278 3.3490 -1.5289 7 7 2.7138 4.0011 -0.6158 8 14 1.5828 4.1869 -3.1382 9 1 0.2710 4.8679 -2.9954 10 1 2.6254 5.1874 -3.4801 11 1 1.4983 3.1711 -4.2181 12 6 1.9953 -0.7661 1.1376 13 6 1.6313 -2.2426 0.9704 14 1 0.5531 -2.3388 0.8432 15 8 2.2954 -2.7696 -0.1800 16 6 2.0698 -3.0200 2.2131 17 7 1.7207 -4.4337 2.0532 18 7 0.5734 -4.8444 2.4573 19 6 0.1965 -6.0888 2.3461 20 17 -1.3716 -6.5688 2.9156 21 6 1.0494 -7.0419 1.7625 22 6 2.2780 -6.6323 1.3289 23 6 3.2441 -7.6021 0.6987 24 6 3.4957 -7.4722 -0.8048 25 6 2.6716 -8.6434 -0.2663 26 6 2.6112 -5.2694 1.4857 27 8 3.6950 -4.8525 1.1093 28 1 -0.3634 0.4513 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0251 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.9884 4.9173 -0.7778 34 1 1.5610 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 3.2599 -2.7168 -0.1360 37 1 1.5632 -2.6179 3.0905 38 1 3.1481 -2.9237 2.3402 39 1 0.7422 -8.0725 1.6626 40 1 4.0834 -7.9040 1.3253 41 1 4.5006 -7.6886 -1.1674 42 1 2.9629 -6.6849 -1.3381 43 1 1.5965 -8.6265 -0.4450 44 1 3.1341 -9.6303 -0.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876499336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -11.949370 kcal Electronic energy + Delta-G solvation = -27537.385561 eV Core-core repulsion = 23517.522203 eV Total energy + Delta-G solvation = -4019.863358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.31569 -39.61660 -39.18321 -38.44993 -37.78949 -37.13129 -35.08494 -34.65304 -32.56344 -31.39710 -29.32956 -28.25512 -26.87565 -25.98102 -24.96524 -23.30412 -23.17551 -22.04134 -21.92729 -19.71057 -18.93841 -18.49382 -18.08251 -17.65220 -17.18225 -17.07258 -16.66337 -16.49856 -16.08909 -15.81612 -15.39421 -15.36552 -15.14878 -14.66616 -14.56018 -14.37907 -13.86688 -13.46457 -13.26776 -13.18171 -13.04246 -12.89153 -12.77004 -12.63493 -12.58957 -12.46853 -12.38903 -12.21030 -12.06861 -11.89324 -11.79052 -11.50537 -11.32836 -11.16326 -10.83604 -10.74316 -10.63678 -9.49662 -9.00494 -8.22634 -6.32347 -0.68272 0.24123 0.34174 1.33841 1.39304 1.40824 1.52697 2.13106 2.38758 2.73310 3.01738 3.07024 3.10899 3.30278 3.44589 3.64247 3.70530 3.82717 3.93630 3.99508 4.01683 4.06498 4.22069 4.35042 4.43494 4.46858 4.55791 4.64143 4.65402 4.68459 4.79932 4.86454 4.91734 5.02118 5.03713 5.14640 5.15019 5.25578 5.27402 5.62429 6.02284 6.27515 6.39870 6.56943 6.73218 6.83400 6.89084 7.37275 8.88336 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.002500 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.686631 B =11199.296074 C =12111.498636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.029 3.971 13 C 0.114 3.886 14 H 0.098 0.902 15 O -0.558 6.558 16 C 0.082 3.918 17 N -0.327 5.327 18 N -0.230 5.230 19 C 0.106 3.894 20 Cl 0.021 6.979 21 C -0.050 4.050 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.175 4.175 25 C -0.142 4.142 26 C 0.478 3.522 27 O -0.540 6.540 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.070 0.930 31 H -0.034 1.034 32 H 0.005 0.995 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.381 0.619 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.196 0.804 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -29.361 8.697 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.192 1.192 12 C -0.100 4.100 13 C 0.053 3.947 14 H 0.115 0.885 15 O -0.365 6.365 16 C -0.038 4.038 17 N -0.147 5.147 18 N -0.057 5.057 19 C -0.091 4.091 20 Cl 0.049 6.951 21 C -0.073 4.073 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.212 4.212 25 C -0.179 4.179 26 C 0.276 3.724 27 O -0.418 6.418 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.089 0.911 31 H -0.016 1.016 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.213 0.787 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.765 -28.455 8.240 30.005 hybrid contribution 0.484 1.107 0.153 1.218 sum -4.281 -27.348 8.393 28.926 Atomic orbital electron populations 1.22222 0.87736 1.00775 1.00045 1.61890 1.08061 1.15186 1.41542 1.19389 0.93717 0.83563 0.95070 1.21455 1.34868 0.97518 1.02446 0.92266 1.25886 0.94974 0.98012 1.00671 1.70073 1.39251 1.11910 1.36177 0.85400 0.78067 0.78075 0.79200 1.19642 1.20578 1.19222 1.22694 1.00808 0.93594 0.92909 1.22141 0.97810 0.90328 0.84419 0.88453 1.86535 1.24421 1.83802 1.41701 1.22865 1.04297 0.75468 1.01198 1.46480 1.09377 1.11571 1.47269 1.70312 1.03520 1.18595 1.13234 1.22231 0.92809 0.89612 1.04442 1.98438 1.20299 1.89100 1.87292 1.22279 0.90641 1.02369 0.91974 1.20756 0.96852 0.92471 1.02991 1.20593 1.00111 0.99435 0.92975 1.22922 1.02537 1.01378 0.94364 1.23238 1.00807 0.94594 0.99260 1.18241 0.85558 0.88281 0.80301 1.90938 1.22586 1.78236 1.50067 0.96407 0.92568 0.91122 1.01599 0.97699 0.92625 0.93364 0.90833 0.77075 0.85022 0.86626 0.78705 0.85300 0.87529 0.90848 0.87460 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.14 127.69 1.17 2.77 16 2 N -0.54 -23.89 4.70 -927.07 -4.36 -28.25 16 3 C 0.21 11.27 4.72 85.56 0.40 11.68 16 4 C -0.52 -30.46 8.46 25.60 0.22 -30.24 16 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.03 1.00 4.59 86.30 0.40 1.40 16 13 C 0.11 3.31 3.19 30.59 0.10 3.41 16 14 H 0.10 2.95 6.34 -2.39 -0.02 2.94 16 15 O -0.56 -19.03 12.07 -139.50 -1.68 -20.71 16 16 C 0.08 1.92 5.32 86.38 0.46 2.37 16 17 N -0.33 -7.93 3.18 -472.39 -1.50 -9.43 16 18 N -0.23 -5.09 10.87 -49.49 -0.54 -5.63 16 19 C 0.11 1.84 7.37 85.47 0.63 2.47 16 20 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 21 C -0.05 -0.70 9.19 22.45 0.21 -0.49 16 22 C -0.12 -2.29 5.49 -19.53 -0.11 -2.39 16 23 C -0.11 -1.77 5.58 -11.52 -0.06 -1.83 16 24 C -0.17 -2.96 10.23 30.59 0.31 -2.65 16 25 C -0.14 -1.43 9.81 30.62 0.30 -1.13 16 26 C 0.48 12.38 6.95 84.98 0.59 12.97 16 27 O -0.54 -16.75 14.88 3.94 0.06 -16.69 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 30 H 0.07 2.41 6.37 -2.39 -0.02 2.40 16 31 H -0.03 -1.94 8.12 -2.39 -0.02 -1.96 16 32 H 0.00 0.28 7.93 -2.39 -0.02 0.27 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 35 H 0.07 2.53 7.93 -2.38 -0.02 2.51 16 36 H 0.38 12.21 8.38 -74.06 -0.62 11.59 16 37 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.12 2.64 7.37 -2.38 -0.02 2.62 16 39 H 0.20 1.20 7.73 -2.91 -0.02 1.18 16 40 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 0.88 7.76 -2.39 -0.02 0.86 16 44 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.60 381.57 -0.31 -72.91 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.41 Total: 17.90 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.07 Total: -1.06 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -6.11 Total: -99.72 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.62 Total: -37.41 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -72.60 -0.31 -72.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876499336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.956 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds