Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00146 * 2 1 4 4 C 1.50697 * 109.47374 * 66.04007 * 3 2 1 5 5 H 1.08001 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00226 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99871 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46867 * 120.00591 * 8 6 4 11 11 H 1.48498 * 109.47008 * 240.00039 * 8 6 4 12 12 C 1.46894 * 111.00160 * 236.03698 * 2 1 3 13 13 C 1.52991 * 109.47572 * 293.95831 * 12 2 1 14 14 H 1.09000 * 109.47000 * 59.99588 * 13 12 2 15 15 O 1.42905 * 109.47115 * 300.00203 * 13 12 2 16 16 C 1.53000 * 109.47589 * 179.97438 * 13 12 2 17 17 N 1.46497 * 109.47323 * 184.99893 * 16 13 12 18 18 N 1.28382 * 119.16638 * 270.01945 * 17 16 13 19 19 C 1.30486 * 122.44075 * 179.97438 * 18 17 16 20 20 Cl 1.73595 * 119.78477 * 180.02562 * 19 18 17 21 21 C 1.40595 * 120.43427 * 359.73518 * 19 18 17 22 22 C 1.36570 * 118.30955 * 0.53001 * 21 19 18 23 23 C 1.50706 * 121.09335 * 179.75097 * 22 21 19 24 24 C 1.52990 * 117.49906 * 108.97543 * 23 22 21 25 25 C 1.52997 * 60.03376 * 252.52277 * 24 23 22 26 26 C 1.34670 * 119.16005 * 90.00128 * 17 16 13 27 27 O 1.22066 * 120.33935 * 0.04317 * 26 17 16 28 28 H 1.08993 * 109.47300 * 183.95859 * 1 2 3 29 29 H 1.08997 * 109.47017 * 303.96310 * 1 2 3 30 30 H 1.09005 * 109.46383 * 63.95594 * 1 2 3 31 31 H 1.09000 * 109.47063 * 186.04460 * 3 2 1 32 32 H 1.08999 * 109.46886 * 306.03783 * 3 2 1 33 33 H 0.96997 * 119.99921 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46869 * 173.95492 * 12 2 1 35 35 H 1.08997 * 109.46976 * 53.95960 * 12 2 1 36 36 H 0.96707 * 113.99839 * 299.99688 * 15 13 12 37 37 H 1.09005 * 109.47206 * 64.99842 * 16 13 12 38 38 H 1.09000 * 109.46698 * 304.99839 * 16 13 12 39 39 H 1.08005 * 120.84556 * 180.28401 * 21 19 18 40 40 H 1.09002 * 115.55799 * 254.66675 * 23 22 21 41 41 H 1.09002 * 117.50050 * 145.02048 * 24 23 22 42 42 H 1.08999 * 117.50296 * 0.02602 * 24 23 22 43 43 H 1.09000 * 117.50202 * 107.47963 * 25 24 23 44 44 H 1.09002 * 117.50007 * 252.48136 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5115 2.0487 6 6 2.0277 3.3493 1.5287 7 7 2.7130 4.0016 0.6152 8 14 1.5826 4.1872 3.1378 9 1 0.8144 3.2450 3.9906 10 1 2.8240 4.5938 3.8441 11 1 0.7561 5.3888 2.8580 12 6 1.9955 -0.7661 -1.1374 13 6 1.6315 -2.2427 -0.9701 14 1 0.5472 -2.3475 -0.9321 15 8 2.2008 -2.7391 0.2430 16 6 2.1793 -3.0405 -2.1551 17 7 1.7300 -4.4314 -2.0568 18 7 2.4539 -5.2793 -1.4202 19 6 2.1150 -6.5329 -1.2928 20 17 3.1461 -7.6201 -0.4163 21 6 0.9173 -7.0076 -1.8557 22 6 0.1314 -6.1275 -2.5433 23 6 -1.1625 -6.5701 -3.1768 24 6 -2.4646 -6.0820 -2.5388 25 6 -2.0397 -7.5438 -2.3859 26 6 0.5679 -4.7881 -2.6364 27 8 -0.1011 -3.9619 -3.2362 28 1 -0.3633 -1.0251 0.0709 29 1 -0.3633 0.5741 0.8523 30 1 -0.3632 0.4512 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5613 1.9273 -0.8310 33 1 2.9882 4.9175 0.7774 34 1 3.0798 -0.6612 -1.1754 35 1 1.5612 -0.3875 -2.0626 36 1 3.1652 -2.6771 0.2791 37 1 3.2688 -3.0088 -2.1419 38 1 1.8143 -2.6057 -3.0856 39 1 0.6281 -8.0429 -1.7505 40 1 -1.1426 -6.6772 -4.2613 41 1 -3.3015 -5.8680 -3.2036 42 1 -2.3855 -5.4404 -1.6612 43 1 -1.6806 -7.8639 -1.4078 44 1 -2.5972 -8.2916 -2.9499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876499337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -13.014373 kcal Electronic energy + Delta-G solvation = -27475.238861 eV Core-core repulsion = 23455.329321 eV Total energy + Delta-G solvation = -4019.909540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.34753 -39.63468 -39.22092 -38.48956 -37.79063 -37.14004 -35.09195 -34.64647 -32.61605 -31.37918 -29.34445 -28.28106 -26.81757 -26.09375 -24.96916 -23.30717 -23.19366 -22.12286 -21.92389 -19.73536 -18.94073 -18.49745 -18.06380 -17.71503 -17.15570 -17.06868 -16.68675 -16.55366 -16.08858 -15.82628 -15.47184 -15.29669 -15.21492 -14.72176 -14.60376 -14.39090 -13.89151 -13.47950 -13.25089 -13.19270 -13.06766 -12.87892 -12.76788 -12.65729 -12.58494 -12.45587 -12.41303 -12.21124 -12.08804 -11.91689 -11.80312 -11.48970 -11.34692 -11.17123 -10.87941 -10.75372 -10.63828 -9.52839 -9.04149 -8.22588 -6.32030 -0.68959 0.24946 0.30045 1.31771 1.39592 1.40286 1.54107 2.08392 2.38994 2.71316 2.98478 3.04974 3.10828 3.28124 3.46458 3.60771 3.68976 3.79971 3.91270 3.94206 4.00866 4.07932 4.20082 4.34102 4.42088 4.42687 4.55611 4.62246 4.63188 4.64777 4.76962 4.82189 4.90283 4.99668 4.99974 5.11944 5.14105 5.23245 5.25864 5.62790 6.01642 6.24635 6.34086 6.56321 6.82038 6.84345 6.86639 7.37542 8.88654 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.002485 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.655165 B =11263.042715 C =12148.801536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.536 5.536 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.028 3.972 13 C 0.119 3.881 14 H 0.079 0.921 15 O -0.552 6.552 16 C 0.083 3.917 17 N -0.324 5.324 18 N -0.214 5.214 19 C 0.102 3.898 20 Cl 0.022 6.978 21 C -0.043 4.043 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.177 4.177 25 C -0.140 4.140 26 C 0.468 3.532 27 O -0.551 6.551 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.011 0.989 32 H -0.038 1.038 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.037 0.963 36 H 0.386 0.614 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.197 0.803 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -29.688 -7.899 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.260 5.260 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.204 1.204 12 C -0.101 4.101 13 C 0.058 3.942 14 H 0.097 0.903 15 O -0.358 6.358 16 C -0.038 4.038 17 N -0.144 5.144 18 N -0.040 5.040 19 C -0.094 4.094 20 Cl 0.049 6.951 21 C -0.066 4.066 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.215 4.215 25 C -0.177 4.177 26 C 0.267 3.733 27 O -0.431 6.431 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.029 0.971 32 H -0.020 1.020 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.235 0.765 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.214 0.786 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.206 -28.816 -7.424 29.929 hybrid contribution -0.186 1.266 -0.501 1.374 sum -3.391 -27.550 -7.925 28.867 Atomic orbital electron populations 1.22177 0.88239 1.00413 0.99749 1.61917 1.07602 1.15227 1.41259 1.19419 0.93989 0.83459 0.94979 1.21473 1.34800 0.97514 1.02342 0.92258 1.25883 0.95013 0.97987 1.00657 1.70078 1.39348 1.11932 1.36040 0.85349 0.78151 0.78149 0.79067 1.19015 1.20161 1.20383 1.22708 1.01356 0.93529 0.92529 1.21919 0.97856 0.90570 0.83870 0.90295 1.86583 1.26755 1.84703 1.37752 1.22885 1.03649 0.75794 1.01432 1.46530 1.17110 1.09851 1.40959 1.70363 1.23401 1.01830 1.08422 1.22252 0.95005 0.89297 1.02874 1.98439 1.66427 1.57048 1.73149 1.22308 0.89620 1.03412 0.91265 1.20705 0.99477 0.90965 1.02419 1.20598 0.86507 1.06954 0.99181 1.22943 0.97234 0.98588 1.02699 1.23242 1.00440 0.92238 1.01784 1.18420 0.81778 0.91387 0.81681 1.90984 1.54146 1.53761 1.44223 0.91722 0.92340 0.97089 0.97062 1.02000 0.92628 0.89513 0.94535 0.76461 0.84913 0.86545 0.78590 0.85343 0.87473 0.90814 0.87346 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.78 9.14 127.69 1.17 2.95 16 2 N -0.54 -23.68 4.62 -927.09 -4.28 -27.96 16 3 C 0.21 11.17 4.72 85.56 0.40 11.57 16 4 C -0.52 -30.22 8.46 25.60 0.22 -30.00 16 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.03 0.97 4.62 86.30 0.40 1.36 16 13 C 0.12 3.49 3.08 30.59 0.09 3.58 16 14 H 0.08 2.68 6.55 -2.39 -0.02 2.66 16 15 O -0.55 -16.86 13.05 -148.98 -1.94 -18.80 16 16 C 0.08 1.94 5.20 86.38 0.45 2.39 16 17 N -0.32 -7.92 3.17 -472.38 -1.50 -9.42 16 18 N -0.21 -4.71 10.77 -49.49 -0.53 -5.25 16 19 C 0.10 1.79 7.37 85.47 0.63 2.42 16 20 Cl 0.02 0.30 29.13 -2.72 -0.08 0.22 16 21 C -0.04 -0.60 9.19 22.45 0.21 -0.39 16 22 C -0.12 -2.38 5.49 -19.53 -0.11 -2.48 16 23 C -0.11 -1.77 5.58 -11.52 -0.06 -1.83 16 24 C -0.18 -2.91 10.23 30.59 0.31 -2.60 16 25 C -0.14 -1.34 9.81 30.62 0.30 -1.04 16 26 C 0.47 12.34 7.46 84.98 0.63 12.97 16 27 O -0.55 -17.94 16.16 -5.53 -0.09 -18.03 16 28 H 0.06 2.42 6.47 -2.39 -0.02 2.40 16 29 H 0.06 2.62 6.76 -2.39 -0.02 2.60 16 30 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.01 0.64 7.93 -2.39 -0.02 0.62 16 32 H -0.04 -2.20 8.12 -2.39 -0.02 -2.22 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.09 2.76 7.93 -2.38 -0.02 2.74 16 35 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 36 H 0.39 9.42 9.05 -74.05 -0.67 8.75 16 37 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.12 2.74 7.37 -2.39 -0.02 2.73 16 39 H 0.20 1.16 7.73 -2.91 -0.02 1.14 16 40 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 0.83 7.76 -2.39 -0.02 0.81 16 44 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -73.68 384.92 -0.65 -74.33 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.36 Total: 14.52 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 5.10 Total: -0.50 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -6.03 Total: -98.75 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.03 Total: -36.83 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.08 Total: 0.22 kcal Total: -73.68 -0.65 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876499337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.312 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds