Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.78697 * 2 1 4 4 C 1.53238 * 109.62669 * 239.51032 * 2 1 3 5 5 N 1.46904 * 109.34205 * 186.46424 * 4 2 1 6 6 C 1.40011 * 111.00184 * 187.25741 * 5 4 2 7 7 C 1.38991 * 120.08916 * 120.00036 * 6 5 4 8 8 F 1.35103 * 120.03931 * 359.97438 * 7 6 5 9 9 C 1.38330 * 119.91479 * 179.72201 * 7 6 5 10 10 C 1.38273 * 120.08747 * 0.29941 * 9 7 6 11 11 N 1.48028 * 119.91434 * 179.97438 * 10 9 7 12 12 O 1.21799 * 119.99658 * 359.97438 * 11 10 9 13 13 O 1.21793 * 119.99939 * 179.97438 * 11 10 9 14 14 C 1.38271 * 120.17138 * 359.97438 * 10 9 7 15 15 C 1.38328 * 120.08611 * 0.02562 * 14 10 9 16 16 F 1.35102 * 120.04702 * 179.97438 * 15 14 10 17 17 C 1.46902 * 111.26762 * 63.10416 * 5 4 2 18 18 C 1.53234 * 109.34108 * 296.89687 * 17 5 4 19 19 H 1.09001 * 109.79340 * 294.02701 * 18 17 5 20 20 C 1.52999 * 109.63111 * 173.53812 * 18 17 5 21 21 N 1.47082 * 109.62452 * 120.48634 * 2 1 3 22 22 C 1.36934 * 120.88550 * 350.86786 * 21 2 1 23 23 H 1.07997 * 119.99950 * 127.27707 * 22 21 2 24 24 C 1.38811 * 119.99979 * 307.28015 * 22 21 2 25 25 N 1.31614 * 120.00032 * 156.85062 * 24 22 21 26 26 Si 1.86803 * 119.99913 * 336.84981 * 24 22 21 27 27 H 1.48500 * 109.47359 * 95.27072 * 26 24 22 28 28 H 1.48500 * 109.46997 * 215.26841 * 26 24 22 29 29 H 1.48498 * 109.46902 * 335.26938 * 26 24 22 30 30 H 1.08999 * 109.47599 * 187.38651 * 1 2 3 31 31 H 1.09000 * 109.47012 * 307.38844 * 1 2 3 32 32 H 1.09000 * 109.46850 * 67.38470 * 1 2 3 33 33 H 1.09001 * 109.49000 * 66.50543 * 4 2 1 34 34 H 1.08997 * 109.49558 * 306.42542 * 4 2 1 35 35 H 1.08005 * 119.95500 * 180.27693 * 9 7 6 36 36 H 1.07994 * 119.95663 * 180.02562 * 14 10 9 37 37 H 1.09002 * 109.48927 * 56.85720 * 17 5 4 38 38 H 1.08995 * 109.48912 * 176.93748 * 17 5 4 39 39 H 1.09004 * 109.46732 * 303.67664 * 20 18 17 40 40 H 1.09007 * 109.46898 * 63.66753 * 20 18 17 41 41 H 1.08996 * 109.47570 * 183.66841 * 20 18 17 42 42 H 0.97004 * 120.00281 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5054 -0.8646 -1.1608 6 6 4.0309 -1.3810 -2.3514 7 6 4.9549 -0.6439 -3.0828 8 9 5.3473 0.5729 -2.6460 9 6 5.4761 -1.1600 -4.2556 10 6 5.0743 -2.4049 -4.7039 11 7 5.6341 -2.9532 -5.9598 12 8 6.4471 -2.3078 -6.5969 13 8 5.2817 -4.0497 -6.3558 14 6 4.1511 -3.1388 -3.9822 15 6 3.6253 -2.6295 -2.8084 16 9 2.7229 -3.3471 -2.1041 17 6 3.9015 -1.6873 -0.0100 18 6 3.4629 -0.9941 1.2843 19 1 4.0174 -0.0643 1.4112 20 6 3.7266 -1.9165 2.4761 21 7 2.0240 -0.7029 1.1939 22 6 1.1672 -1.0757 2.1948 23 1 1.1518 -2.0993 2.5391 24 6 0.3184 -0.1382 2.7671 25 7 -0.7847 -0.5297 3.3687 26 14 0.7420 1.6793 2.6832 27 1 0.0521 2.2953 1.5213 28 1 0.3002 2.3487 3.9329 29 1 2.2103 1.8387 2.5286 30 1 -0.3634 -1.0191 0.1321 31 1 -0.3633 0.6240 0.8165 32 1 -0.3633 0.3952 -0.9487 33 1 1.7810 -0.1639 -2.1357 34 1 1.5922 -1.7226 -1.2961 35 1 6.1975 -0.5898 -4.8220 36 1 3.8401 -4.1108 -4.3353 37 1 3.4231 -2.6643 -0.0796 38 1 4.9843 -1.8114 -0.0073 39 1 3.2150 -2.8664 2.3205 40 1 4.7983 -2.0921 2.5695 41 1 3.3544 -1.4483 3.3873 42 1 -1.3777 0.1254 3.7689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = -28.823810 kcal Electronic energy + Delta-G solvation = -31138.503650 eV Core-core repulsion = 26566.111882 eV Total energy + Delta-G solvation = -4572.391768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.56970 -50.24755 -43.42521 -41.18117 -39.69634 -37.82464 -36.91060 -34.70374 -33.86609 -32.10973 -32.00464 -29.75340 -28.10595 -27.79365 -26.56130 -24.75364 -24.33760 -23.03203 -22.30411 -21.23501 -20.93160 -20.07929 -18.86533 -18.79282 -18.31878 -18.17341 -18.08080 -17.47040 -17.10013 -17.05537 -16.82706 -16.47869 -16.26945 -16.12975 -15.40152 -14.84646 -14.63785 -14.49664 -14.33833 -14.16505 -13.99498 -13.64913 -13.58074 -13.36830 -12.97678 -12.84585 -12.81817 -12.67139 -12.52615 -12.38363 -12.34702 -12.04310 -11.97204 -11.86548 -11.65426 -11.39471 -10.59983 -10.52320 -10.40219 -9.91048 -8.45549 -8.19050 -5.71821 -1.62962 -0.67882 -0.12135 -0.01233 1.30608 1.40921 1.51982 1.58890 2.17267 2.33096 2.42174 2.60483 3.00511 3.11757 3.20173 3.26448 3.51173 3.73736 3.97874 4.00837 4.04904 4.17338 4.24116 4.29589 4.38925 4.41241 4.43867 4.62285 4.64529 4.66038 4.77468 4.81984 4.85385 5.03737 5.08259 5.21152 5.34399 5.40623 5.56408 5.66123 5.82354 6.00212 6.32723 6.34442 7.05672 7.60115 8.18953 8.97404 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.003332 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.096938 B = 8400.300146 C = 8637.675493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.052 3.948 5 N -0.504 5.504 6 C 0.075 3.925 7 C 0.159 3.841 8 F -0.105 7.105 9 C -0.076 4.076 10 C 0.002 3.998 11 N 0.031 4.969 12 O -0.147 6.147 13 O -0.162 6.162 14 C -0.080 4.080 15 C 0.100 3.900 16 F -0.116 7.116 17 C 0.055 3.945 18 C 0.163 3.837 19 H 0.033 0.967 20 C -0.124 4.124 21 N -0.610 5.610 22 C -0.252 4.252 23 H 0.038 0.962 24 C 0.022 3.978 25 N -0.933 5.933 26 Si 0.916 3.084 27 H -0.268 1.268 28 H -0.309 1.309 29 H -0.270 1.270 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.198 0.802 36 H 0.187 0.813 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.005 -2.141 -16.460 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.046 0.954 4 C -0.075 4.075 5 N -0.225 5.225 6 C -0.022 4.022 7 C 0.137 3.863 8 F -0.082 7.082 9 C -0.097 4.097 10 C -0.082 4.082 11 N 0.552 4.448 12 O -0.366 6.366 13 O -0.377 6.377 14 C -0.100 4.100 15 C 0.077 3.923 16 F -0.095 7.095 17 C -0.071 4.071 18 C 0.058 3.942 19 H 0.051 0.949 20 C -0.182 4.182 21 N -0.336 5.336 22 C -0.382 4.382 23 H 0.055 0.945 24 C -0.177 4.177 25 N -0.574 5.574 26 Si 0.744 3.256 27 H -0.195 1.195 28 H -0.237 1.237 29 H -0.195 1.195 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.215 0.785 36 H 0.204 0.796 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.733 -1.363 -15.589 20.174 hybrid contribution -0.700 0.106 0.406 0.816 sum 12.032 -1.257 -15.183 19.413 Atomic orbital electron populations 1.21907 0.94752 1.02058 1.00691 1.20736 0.93482 0.93835 0.85732 0.95356 1.22759 0.84203 1.00863 0.99668 1.59650 1.12740 1.50160 0.99974 1.19545 0.97016 0.91501 0.94180 1.16616 0.95196 0.82146 0.92327 1.91629 1.88667 1.39129 1.88825 1.20988 1.00223 0.93722 0.94723 1.20226 1.02752 0.96482 0.88691 1.43454 0.99317 1.00387 1.01676 1.94571 1.27128 1.59364 1.55504 1.94590 1.63749 1.06814 1.72505 1.20925 0.94360 1.02624 0.92140 1.17781 0.92077 0.90551 0.91870 1.91607 1.63990 1.76713 1.77157 1.22747 1.00816 0.94336 0.89248 1.20800 0.84750 0.95934 0.92750 0.94898 1.21633 1.00657 0.98574 0.97334 1.44663 1.02650 1.68715 1.17610 1.18130 1.14821 0.92652 1.12547 0.94471 1.26202 0.95773 1.00470 0.95280 1.69993 1.11486 1.35512 1.40452 0.86410 0.79057 0.83917 0.76193 1.19465 1.23682 1.19484 0.93303 0.93640 0.91227 0.89181 0.93315 0.78512 0.79616 0.93809 0.88698 0.93812 0.90436 0.93563 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 7.84 71.98 0.56 -5.02 16 2 C 0.17 6.62 2.46 44.96 0.11 6.73 16 3 H 0.03 1.17 7.44 -2.39 -0.02 1.16 16 4 C 0.05 1.65 4.47 86.38 0.39 2.04 16 5 N -0.50 -14.44 4.42 -693.83 -3.07 -17.51 16 6 C 0.07 1.67 4.68 38.20 0.18 1.85 16 7 C 0.16 2.94 7.31 22.47 0.16 3.10 16 8 F -0.10 -2.22 17.08 44.97 0.77 -1.46 16 9 C -0.08 -1.09 9.53 22.30 0.21 -0.87 16 10 C 0.00 0.03 6.85 36.39 0.25 0.28 16 11 N 0.03 0.59 4.45 -46.42 -0.21 0.39 16 12 O -0.15 -2.93 18.44 18.89 0.35 -2.58 16 13 O -0.16 -3.41 18.44 18.90 0.35 -3.06 16 14 C -0.08 -1.29 9.53 22.30 0.21 -1.08 16 15 C 0.10 2.04 6.74 22.47 0.15 2.19 16 16 F -0.12 -2.91 13.57 44.97 0.61 -2.30 16 17 C 0.06 1.65 4.54 86.38 0.39 2.04 16 18 C 0.16 6.01 3.66 44.96 0.16 6.18 16 19 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 20 C -0.12 -4.32 8.19 71.98 0.59 -3.73 16 21 N -0.61 -26.82 2.26 -650.64 -1.47 -28.29 16 22 C -0.25 -13.16 7.13 84.03 0.60 -12.56 16 23 H 0.04 2.19 7.40 -2.91 -0.02 2.17 16 24 C 0.02 1.19 3.88 84.86 0.33 1.52 16 25 N -0.93 -54.61 13.97 21.65 0.30 -54.31 16 26 Si 0.92 44.24 24.77 68.60 1.70 45.94 16 27 H -0.27 -12.32 6.46 99.48 0.64 -11.68 16 28 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 30 H 0.05 2.18 7.69 -2.39 -0.02 2.17 16 31 H 0.04 2.10 3.38 -2.39 -0.01 2.09 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 34 H 0.05 1.63 6.27 -2.39 -0.01 1.61 16 35 H 0.20 1.91 7.60 -2.91 -0.02 1.89 16 36 H 0.19 2.42 7.60 -2.91 -0.02 2.40 16 37 H 0.04 1.39 6.63 -2.39 -0.02 1.37 16 38 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 39 H 0.04 1.59 7.76 -2.38 -0.02 1.57 16 40 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.05 1.84 7.52 -2.39 -0.02 1.82 16 42 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -61.11 343.10 4.64 -56.46 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.01 Total: 4.06 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.30 Total: 2.66 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.45 Total: -99.73 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: 0.70 Total: -5.64 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 1.38 Total: -3.76 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.70 Total: 45.94 kcal Total: -61.11 4.64 -56.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.639 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds