Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.78630 * 2 1 4 4 C 1.53245 * 109.62873 * 239.51717 * 2 1 3 5 5 N 1.46901 * 109.34074 * 186.46192 * 4 2 1 6 6 C 1.40019 * 110.99933 * 187.25194 * 5 4 2 7 7 C 1.38987 * 120.08457 * 299.72389 * 6 5 4 8 8 F 1.35094 * 120.04557 * 359.97438 * 7 6 5 9 9 C 1.38330 * 119.91044 * 179.74323 * 7 6 5 10 10 C 1.38276 * 120.08845 * 0.52944 * 9 7 6 11 11 N 1.48024 * 119.91845 * 179.74210 * 10 9 7 12 12 O 1.21799 * 120.00262 * 179.97438 * 11 10 9 13 13 O 1.21802 * 119.99626 * 359.97438 * 11 10 9 14 14 C 1.38277 * 120.16858 * 359.72662 * 10 9 7 15 15 C 1.38331 * 120.08743 * 0.02562 * 14 10 9 16 16 F 1.35101 * 120.04526 * 179.97438 * 15 14 10 17 17 C 1.46898 * 111.26899 * 63.10108 * 5 4 2 18 18 C 1.53241 * 109.34260 * 296.89814 * 17 5 4 19 19 H 1.09000 * 109.63069 * 173.54551 * 18 17 5 20 20 C 1.53001 * 109.62446 * 294.11944 * 18 17 5 21 21 N 1.47074 * 108.52267 * 53.82937 * 18 17 5 22 22 C 1.36935 * 120.88229 * 128.83743 * 21 18 17 23 23 H 1.07999 * 120.00036 * 206.24757 * 22 21 18 24 24 C 1.38817 * 119.99904 * 26.24898 * 22 21 18 25 25 N 1.31618 * 119.99672 * 17.40826 * 24 22 21 26 26 Si 1.86794 * 119.99871 * 197.40740 * 24 22 21 27 27 H 1.48496 * 109.47487 * 89.99911 * 26 24 22 28 28 H 1.48503 * 109.47012 * 210.00175 * 26 24 22 29 29 H 1.48501 * 109.47147 * 329.99633 * 26 24 22 30 30 H 1.09007 * 109.47025 * 180.48231 * 1 2 3 31 31 H 1.08998 * 109.47389 * 300.47950 * 1 2 3 32 32 H 1.08994 * 109.47197 * 60.48719 * 1 2 3 33 33 H 1.08994 * 109.49169 * 66.49783 * 4 2 1 34 34 H 1.09007 * 109.51156 * 306.43332 * 4 2 1 35 35 H 1.08001 * 119.95750 * 180.27715 * 9 7 6 36 36 H 1.08003 * 119.95572 * 179.97438 * 14 10 9 37 37 H 1.09004 * 109.49233 * 56.85737 * 17 5 4 38 38 H 1.09000 * 109.49016 * 176.93557 * 17 5 4 39 39 H 1.09005 * 109.47261 * 179.02815 * 20 18 17 40 40 H 1.09000 * 109.47671 * 299.02434 * 20 18 17 41 41 H 1.09003 * 109.47505 * 59.03177 * 20 18 17 42 42 H 0.97004 * 119.99471 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2439 5 7 3.5055 -0.8644 -1.1609 6 6 4.0310 -1.3808 -2.3516 7 6 3.6344 -2.6343 -2.8024 8 9 2.7412 -3.3571 -2.0919 9 6 4.1518 -3.1387 -3.9819 10 6 5.0707 -2.4022 -4.7067 11 7 5.6263 -2.9481 -5.9655 12 8 6.4354 -2.3005 -6.6053 13 8 5.2742 -4.0449 -6.3613 14 6 5.4717 -1.1570 -4.2588 15 6 4.9550 -0.6435 -3.0828 16 9 5.3478 0.5729 -2.6457 17 6 3.9016 -1.6871 -0.0102 18 6 3.4629 -0.9941 1.2842 19 1 3.6509 -1.6512 2.1333 20 6 4.2416 0.3115 1.4575 21 7 2.0241 -0.7029 1.1938 22 6 1.1673 -1.0758 2.1948 23 1 0.1254 -1.2559 1.9746 24 6 1.6378 -1.2224 3.4925 25 7 2.7897 -0.6882 3.8390 26 14 0.6362 -2.1777 4.7468 27 1 1.0290 -3.6093 4.7074 28 1 0.8916 -1.6315 6.1039 29 1 -0.8083 -2.0518 4.4264 30 1 -0.3633 -1.0277 0.0087 31 1 -0.3634 0.5212 0.8856 32 1 -0.3633 0.5062 -0.8943 33 1 1.7810 -0.1638 -2.1357 34 1 1.5923 -1.7225 -1.2967 35 1 3.8407 -4.1107 -4.3352 36 1 6.1900 -0.5849 -4.8274 37 1 3.4233 -2.6641 -0.0798 38 1 4.9845 -1.8112 -0.0074 39 1 3.9154 0.8109 2.3698 40 1 5.3074 0.0928 1.5242 41 1 4.0569 0.9611 0.6019 42 1 3.1187 -0.7910 4.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = -16.300791 kcal Electronic energy + Delta-G solvation = -31165.574734 eV Core-core repulsion = 26593.726005 eV Total energy + Delta-G solvation = -4571.848730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.54017 -49.25376 -42.51606 -39.98914 -38.33996 -36.90291 -35.24172 -32.78464 -31.90538 -31.17071 -30.48612 -28.00898 -26.77977 -26.29716 -24.59308 -23.73843 -23.29558 -22.14061 -20.96772 -20.00580 -19.28953 -18.78678 -17.89967 -17.61379 -17.27747 -17.20283 -16.44263 -16.18662 -16.06966 -15.70880 -15.35468 -14.92782 -14.66066 -14.05909 -13.77511 -13.65046 -13.48619 -13.21812 -13.06445 -12.72381 -12.54723 -12.09478 -11.89083 -11.74502 -11.59675 -11.51893 -11.45124 -11.16725 -11.07552 -10.81022 -10.74772 -10.59813 -10.17464 -10.12877 -9.75895 -9.54446 -9.51092 -9.38037 -8.66476 -8.39133 -6.79521 -5.86907 -3.28532 -0.68116 0.21258 0.84629 0.89814 2.51278 3.22919 3.31621 3.39453 3.40255 3.46392 3.57245 4.00727 4.11652 4.40028 4.41423 4.76305 4.92219 5.07427 5.11905 5.26449 5.28772 5.49840 5.53774 5.67656 5.81528 5.86878 5.94620 6.01257 6.07987 6.12873 6.22401 6.40305 6.61312 6.78494 6.83716 6.92448 7.04853 7.10327 7.13876 7.28656 7.54616 7.68523 7.82764 8.33110 9.12255 9.73836 10.30647 11.20854 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.003283 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.588044 B = 8527.883805 C = 8898.483004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.175 3.825 3 H 0.038 0.962 4 C 0.042 3.958 5 N -0.491 5.491 6 C 0.090 3.910 7 C 0.102 3.898 8 F -0.105 7.105 9 C -0.098 4.098 10 C -0.004 4.004 11 N 0.031 4.969 12 O -0.149 6.149 13 O -0.151 6.151 14 C -0.101 4.101 15 C 0.155 3.845 16 F -0.097 7.097 17 C 0.037 3.963 18 C 0.201 3.799 19 H 0.103 0.897 20 C -0.137 4.137 21 N -0.584 5.584 22 C -0.252 4.252 23 H 0.073 0.927 24 C 0.004 3.996 25 N -0.897 5.897 26 Si 0.900 3.100 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.034 0.966 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -1.615 -14.830 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.056 0.944 4 C -0.086 4.086 5 N -0.213 5.213 6 C -0.007 4.007 7 C 0.079 3.921 8 F -0.083 7.083 9 C -0.119 4.119 10 C -0.087 4.087 11 N 0.553 4.447 12 O -0.366 6.366 13 O -0.367 6.367 14 C -0.121 4.121 15 C 0.134 3.866 16 F -0.075 7.075 17 C -0.090 4.090 18 C 0.094 3.906 19 H 0.121 0.879 20 C -0.196 4.196 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.091 0.909 24 C -0.195 4.195 25 N -0.542 5.542 26 Si 0.731 3.269 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.053 0.947 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.691 -0.846 -13.857 14.365 hybrid contribution -0.625 -1.354 0.422 1.550 sum 3.066 -2.200 -13.435 13.955 Atomic orbital electron populations 1.21798 0.95452 1.01618 1.00691 1.20428 0.92648 0.94224 0.85965 0.94441 1.23012 0.83655 1.00975 1.00926 1.59890 1.13145 1.49633 0.98585 1.19715 0.95613 0.90467 0.94932 1.17898 0.92242 0.90797 0.91180 1.91619 1.64058 1.76172 1.76419 1.20861 0.95563 1.02201 0.93255 1.20219 1.03054 0.96347 0.89092 1.43350 0.99392 1.00464 1.01518 1.94565 1.27440 1.59356 1.55242 1.94572 1.63307 1.06548 1.72317 1.20858 1.01097 0.94307 0.95851 1.16713 0.95309 0.82606 0.92005 1.91640 1.88544 1.38678 1.88642 1.23185 0.99319 0.95083 0.91366 1.20431 0.83119 0.95537 0.91520 0.87921 1.21983 0.96690 0.99184 1.01761 1.44295 1.03410 1.64928 1.18015 1.19204 0.92857 1.39633 0.86471 0.90918 1.25002 0.97668 1.00070 0.96738 1.70001 1.21079 1.44852 1.18248 0.86323 0.79727 0.79958 0.80938 1.21587 1.21813 1.20542 0.92714 0.91422 0.94090 0.91695 0.93193 0.81312 0.80937 0.93790 0.91646 0.90480 0.95878 0.94726 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.93 37.16 0.29 -2.08 16 2 C 0.17 3.35 3.26 -67.49 -0.22 3.13 16 3 H 0.04 0.77 7.63 -51.93 -0.40 0.38 16 4 C 0.04 0.68 4.48 -3.70 -0.02 0.67 16 5 N -0.49 -7.95 3.91 -170.65 -0.67 -8.62 16 6 C 0.09 1.21 4.68 -83.56 -0.39 0.82 16 7 C 0.10 1.25 6.74 -39.27 -0.26 0.98 16 8 F -0.10 -1.46 13.56 2.25 0.03 -1.42 16 9 C -0.10 -1.01 9.53 -39.53 -0.38 -1.39 16 10 C 0.00 -0.04 6.85 -79.92 -0.55 -0.59 16 11 N 0.03 0.36 4.45 33.98 0.15 0.52 16 12 O -0.15 -1.80 18.44 -29.46 -0.54 -2.34 16 13 O -0.15 -1.85 18.44 -29.46 -0.54 -2.40 16 14 C -0.10 -0.99 9.53 -39.53 -0.38 -1.36 16 15 C 0.16 1.83 7.31 -39.27 -0.29 1.54 16 16 F -0.10 -1.27 17.08 2.25 0.04 -1.23 16 17 C 0.04 0.66 4.63 -3.70 -0.02 0.65 16 18 C 0.20 4.35 2.35 -67.49 -0.16 4.20 16 19 H 0.10 2.55 6.11 -51.93 -0.32 2.23 16 20 C -0.14 -2.92 8.96 37.16 0.33 -2.59 16 21 N -0.58 -13.22 2.73 -157.00 -0.43 -13.65 16 22 C -0.25 -6.31 8.73 -15.06 -0.13 -6.44 16 23 H 0.07 1.79 6.15 -52.49 -0.32 1.47 16 24 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 25 N -0.90 -23.93 9.79 55.49 0.54 -23.38 16 26 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.05 0.96 7.54 -51.93 -0.39 0.57 16 31 H 0.07 1.26 7.57 -51.93 -0.39 0.87 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.05 0.85 6.31 -51.92 -0.33 0.52 16 35 H 0.17 1.47 7.60 -52.49 -0.40 1.07 16 36 H 0.17 1.35 7.60 -52.48 -0.40 0.95 16 37 H 0.04 0.82 6.58 -51.93 -0.34 0.47 16 38 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.08 1.88 6.91 -51.93 -0.36 1.52 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 42 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -26.39 347.09 -8.30 -34.69 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.84 Total: -0.55 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.25 Total: -2.45 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.40 Total: -45.14 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -1.09 Total: -4.73 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.39 -8.30 -34.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds