Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.78630 * 2 1 4 4 C 1.53245 * 109.62873 * 239.51717 * 2 1 3 5 5 N 1.46901 * 109.34074 * 186.46192 * 4 2 1 6 6 C 1.40019 * 110.99933 * 187.25194 * 5 4 2 7 7 C 1.38987 * 120.08457 * 299.72389 * 6 5 4 8 8 F 1.35094 * 120.04557 * 359.97438 * 7 6 5 9 9 C 1.38330 * 119.91044 * 179.74323 * 7 6 5 10 10 C 1.38276 * 120.08845 * 0.52944 * 9 7 6 11 11 N 1.48024 * 119.91845 * 179.74210 * 10 9 7 12 12 O 1.21799 * 120.00262 * 179.97438 * 11 10 9 13 13 O 1.21802 * 119.99626 * 359.97438 * 11 10 9 14 14 C 1.38277 * 120.16858 * 359.72662 * 10 9 7 15 15 C 1.38331 * 120.08743 * 0.02562 * 14 10 9 16 16 F 1.35101 * 120.04526 * 179.97438 * 15 14 10 17 17 C 1.46898 * 111.26899 * 63.10108 * 5 4 2 18 18 C 1.53241 * 109.34260 * 296.89814 * 17 5 4 19 19 H 1.09000 * 109.63069 * 173.54551 * 18 17 5 20 20 C 1.53001 * 109.62446 * 294.11944 * 18 17 5 21 21 N 1.47074 * 108.52267 * 53.82937 * 18 17 5 22 22 C 1.36935 * 120.88229 * 128.83743 * 21 18 17 23 23 H 1.07999 * 120.00036 * 206.24757 * 22 21 18 24 24 C 1.38817 * 119.99904 * 26.24898 * 22 21 18 25 25 N 1.31618 * 119.99672 * 17.40826 * 24 22 21 26 26 Si 1.86794 * 119.99871 * 197.40740 * 24 22 21 27 27 H 1.48496 * 109.47487 * 89.99911 * 26 24 22 28 28 H 1.48503 * 109.47012 * 210.00175 * 26 24 22 29 29 H 1.48501 * 109.47147 * 329.99633 * 26 24 22 30 30 H 1.09007 * 109.47025 * 180.48231 * 1 2 3 31 31 H 1.08998 * 109.47389 * 300.47950 * 1 2 3 32 32 H 1.08994 * 109.47197 * 60.48719 * 1 2 3 33 33 H 1.08994 * 109.49169 * 66.49783 * 4 2 1 34 34 H 1.09007 * 109.51156 * 306.43332 * 4 2 1 35 35 H 1.08001 * 119.95750 * 180.27715 * 9 7 6 36 36 H 1.08003 * 119.95572 * 179.97438 * 14 10 9 37 37 H 1.09004 * 109.49233 * 56.85737 * 17 5 4 38 38 H 1.09000 * 109.49016 * 176.93557 * 17 5 4 39 39 H 1.09005 * 109.47261 * 179.02815 * 20 18 17 40 40 H 1.09000 * 109.47671 * 299.02434 * 20 18 17 41 41 H 1.09003 * 109.47505 * 59.03177 * 20 18 17 42 42 H 0.97004 * 119.99471 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2439 5 7 3.5055 -0.8644 -1.1609 6 6 4.0310 -1.3808 -2.3516 7 6 3.6344 -2.6343 -2.8024 8 9 2.7412 -3.3571 -2.0919 9 6 4.1518 -3.1387 -3.9819 10 6 5.0707 -2.4022 -4.7067 11 7 5.6263 -2.9481 -5.9655 12 8 6.4354 -2.3005 -6.6053 13 8 5.2742 -4.0449 -6.3613 14 6 5.4717 -1.1570 -4.2588 15 6 4.9550 -0.6435 -3.0828 16 9 5.3478 0.5729 -2.6457 17 6 3.9016 -1.6871 -0.0102 18 6 3.4629 -0.9941 1.2842 19 1 3.6509 -1.6512 2.1333 20 6 4.2416 0.3115 1.4575 21 7 2.0241 -0.7029 1.1938 22 6 1.1673 -1.0758 2.1948 23 1 0.1254 -1.2559 1.9746 24 6 1.6378 -1.2224 3.4925 25 7 2.7897 -0.6882 3.8390 26 14 0.6362 -2.1777 4.7468 27 1 1.0290 -3.6093 4.7074 28 1 0.8916 -1.6315 6.1039 29 1 -0.8083 -2.0518 4.4264 30 1 -0.3633 -1.0277 0.0087 31 1 -0.3634 0.5212 0.8856 32 1 -0.3633 0.5062 -0.8943 33 1 1.7810 -0.1638 -2.1357 34 1 1.5923 -1.7225 -1.2967 35 1 3.8407 -4.1107 -4.3352 36 1 6.1900 -0.5849 -4.8274 37 1 3.4233 -2.6641 -0.0798 38 1 4.9845 -1.8112 -0.0074 39 1 3.9154 0.8109 2.3698 40 1 5.3074 0.0928 1.5242 41 1 4.0569 0.9611 0.6019 42 1 3.1187 -0.7910 4.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -28.543932 kcal Electronic energy + Delta-G solvation = -31166.105637 eV Core-core repulsion = 26593.726005 eV Total energy + Delta-G solvation = -4572.379632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.54649 -50.21550 -43.41614 -41.12858 -39.60133 -37.81631 -36.68218 -34.38479 -33.50759 -32.06003 -31.75637 -29.67810 -27.94378 -27.70238 -26.17544 -24.91785 -24.46301 -23.26701 -22.50876 -20.92525 -20.60602 -20.02289 -18.78846 -18.76081 -18.40485 -18.13684 -17.73572 -17.43256 -17.07398 -16.92480 -16.71810 -16.18182 -16.01598 -15.73200 -15.30251 -15.21367 -14.64540 -14.37885 -14.21276 -13.71494 -13.64897 -13.60283 -13.37690 -13.02909 -12.84162 -12.81766 -12.79669 -12.51909 -12.41935 -12.40310 -12.37717 -12.25331 -11.96478 -11.75154 -11.42782 -11.16892 -10.61670 -10.44578 -10.37834 -9.77797 -8.62530 -7.80834 -5.22838 -1.60727 -0.65722 -0.09986 -0.00121 1.47043 1.50256 1.56344 1.61327 2.24679 2.37773 2.53593 2.63146 3.14081 3.22684 3.34346 3.50356 3.53353 3.79656 4.03503 4.08511 4.15853 4.27309 4.29399 4.38401 4.46968 4.49582 4.61852 4.68347 4.74949 4.82845 4.90076 5.02006 5.09253 5.13229 5.24448 5.37739 5.43427 5.59973 5.71431 5.85265 5.86714 6.02815 6.34096 6.44235 7.21626 7.90459 8.43243 9.24688 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.003283 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.588044 B = 8527.883805 C = 8898.483004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.168 3.832 3 H 0.024 0.976 4 C 0.052 3.948 5 N -0.497 5.497 6 C 0.075 3.925 7 C 0.098 3.902 8 F -0.116 7.116 9 C -0.080 4.080 10 C 0.000 4.000 11 N 0.032 4.968 12 O -0.148 6.148 13 O -0.162 6.162 14 C -0.077 4.077 15 C 0.156 3.844 16 F -0.105 7.105 17 C 0.052 3.948 18 C 0.199 3.801 19 H 0.066 0.934 20 C -0.119 4.119 21 N -0.599 5.599 22 C -0.251 4.251 23 H 0.074 0.926 24 C -0.045 4.045 25 N -0.921 5.921 26 Si 0.954 3.046 27 H -0.291 1.291 28 H -0.300 1.300 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.187 0.813 36 H 0.197 0.803 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -1.986 -17.444 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.061 3.939 3 H 0.041 0.959 4 C -0.075 4.075 5 N -0.218 5.218 6 C -0.023 4.023 7 C 0.076 3.924 8 F -0.095 7.095 9 C -0.101 4.101 10 C -0.083 4.083 11 N 0.552 4.448 12 O -0.367 6.367 13 O -0.376 6.376 14 C -0.097 4.097 15 C 0.135 3.865 16 F -0.083 7.083 17 C -0.075 4.075 18 C 0.092 3.908 19 H 0.084 0.916 20 C -0.178 4.178 21 N -0.322 5.322 22 C -0.381 4.381 23 H 0.092 0.908 24 C -0.241 4.241 25 N -0.567 5.567 26 Si 0.784 3.216 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.197 1.197 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.204 0.796 36 H 0.214 0.786 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.843 -1.232 -16.512 16.998 hybrid contribution -0.637 -1.205 1.109 1.758 sum 3.206 -2.437 -15.402 15.920 Atomic orbital electron populations 1.21708 0.94062 1.01468 1.01473 1.20604 0.93939 0.93503 0.85811 0.95858 1.22813 0.83992 1.00613 1.00116 1.59686 1.13006 1.49758 0.99322 1.19655 0.96894 0.91461 0.94267 1.17793 0.92500 0.90433 0.91710 1.91594 1.64601 1.76412 1.76865 1.20922 0.94478 1.02607 0.92043 1.20214 1.02958 0.96504 0.88636 1.43442 0.99287 1.00376 1.01668 1.94569 1.27412 1.59243 1.55428 1.94584 1.63583 1.06808 1.72647 1.20983 1.00217 0.93807 0.94703 1.16656 0.95175 0.82280 0.92401 1.91627 1.88634 1.39199 1.88847 1.22814 0.99836 0.94269 0.90546 1.20275 0.83065 0.95084 0.92397 0.91570 1.21756 0.97303 0.98852 0.99906 1.44507 1.03596 1.65555 1.18553 1.19456 0.93262 1.38373 0.87046 0.90808 1.25596 0.98765 1.01447 0.98320 1.70158 1.22382 1.46307 1.17899 0.85461 0.78951 0.78474 0.78677 1.21883 1.22730 1.19745 0.93180 0.93438 0.90559 0.89140 0.93629 0.79575 0.78566 0.94568 0.90362 0.94077 0.94584 0.94336 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.93 71.98 0.57 -3.76 16 2 C 0.17 6.35 3.26 44.96 0.15 6.50 16 3 H 0.02 0.96 7.63 -2.38 -0.02 0.95 16 4 C 0.05 1.62 4.48 86.39 0.39 2.00 16 5 N -0.50 -15.34 3.91 -693.81 -2.71 -18.05 16 6 C 0.07 1.82 4.68 38.19 0.18 2.00 16 7 C 0.10 2.17 6.74 22.47 0.15 2.32 16 8 F -0.12 -3.05 13.56 44.97 0.61 -2.44 16 9 C -0.08 -1.39 9.53 22.30 0.21 -1.18 16 10 C 0.00 0.00 6.85 36.39 0.25 0.25 16 11 N 0.03 0.64 4.45 -46.41 -0.21 0.43 16 12 O -0.15 -3.11 18.44 18.89 0.35 -2.76 16 13 O -0.16 -3.53 18.44 18.88 0.35 -3.19 16 14 C -0.08 -1.23 9.53 22.30 0.21 -1.01 16 15 C 0.16 3.23 7.31 22.47 0.16 3.40 16 16 F -0.11 -2.49 17.08 44.97 0.77 -1.72 16 17 C 0.05 1.86 4.63 86.38 0.40 2.26 16 18 C 0.20 8.78 2.35 44.96 0.11 8.89 16 19 H 0.07 3.42 6.11 -2.39 -0.01 3.41 16 20 C -0.12 -5.18 8.96 71.98 0.64 -4.53 16 21 N -0.60 -27.53 2.73 -650.63 -1.78 -29.31 16 22 C -0.25 -12.78 8.73 84.03 0.73 -12.05 16 23 H 0.07 3.67 6.15 -2.91 -0.02 3.65 16 24 C -0.05 -2.40 4.93 84.86 0.42 -1.98 16 25 N -0.92 -51.02 9.79 21.65 0.21 -50.81 16 26 Si 0.95 43.42 29.59 68.60 2.03 45.45 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 30 H 0.05 1.71 7.54 -2.38 -0.02 1.69 16 31 H 0.05 1.76 7.57 -2.39 -0.02 1.74 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.37 8.09 -2.39 -0.02 2.35 16 34 H 0.05 1.48 6.31 -2.38 -0.02 1.46 16 35 H 0.19 2.61 7.60 -2.91 -0.02 2.59 16 36 H 0.20 2.23 7.60 -2.91 -0.02 2.21 16 37 H 0.04 1.33 6.58 -2.38 -0.02 1.32 16 38 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 39 H 0.04 2.07 6.91 -2.38 -0.02 2.05 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.60 7.08 -2.39 -0.02 1.58 16 42 H 0.25 13.46 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -58.03 347.09 5.27 -52.75 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.08 Total: 6.54 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.58 Total: 3.10 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.48 Total: -97.74 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.70 Total: -5.95 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.38 Total: -4.16 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -58.03 5.27 -52.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.211 kcal (2) G-P(sol) polarization free energy of solvation -58.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds