Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.62862 * 2 1 4 4 C 1.53239 * 109.63183 * 120.39307 * 2 1 3 5 5 N 1.46895 * 109.36246 * 173.52747 * 4 2 1 6 6 C 1.40020 * 110.99852 * 172.76052 * 5 4 2 7 7 C 1.38996 * 120.08572 * 299.72126 * 6 5 4 8 8 F 1.35102 * 120.03998 * 359.97438 * 7 6 5 9 9 C 1.38326 * 119.91347 * 179.67901 * 7 6 5 10 10 C 1.38277 * 120.08652 * 0.62024 * 9 7 6 11 11 N 1.48024 * 119.91415 * 179.69927 * 10 9 7 12 12 O 1.21806 * 119.99864 * 179.97438 * 11 10 9 13 13 O 1.21794 * 120.00297 * 359.97438 * 11 10 9 14 14 C 1.38278 * 120.17232 * 359.68186 * 10 9 7 15 15 C 1.38339 * 120.08253 * 359.97438 * 14 10 9 16 16 F 1.35097 * 120.03774 * 180.02562 * 15 14 10 17 17 C 1.46899 * 111.27129 * 296.93415 * 5 4 2 18 18 C 1.53243 * 109.36201 * 63.06525 * 17 5 4 19 19 H 1.09001 * 109.62666 * 186.47477 * 18 17 5 20 20 C 1.53004 * 109.62597 * 65.89206 * 18 17 5 21 21 N 1.47076 * 108.52052 * 306.18418 * 18 17 5 22 22 C 1.36939 * 120.88332 * 231.20876 * 21 18 17 23 23 H 1.07997 * 120.00301 * 153.35746 * 22 21 18 24 24 C 1.38817 * 119.99577 * 333.35612 * 22 21 18 25 25 N 1.31617 * 119.99771 * 343.02094 * 24 22 21 26 26 Si 1.86798 * 119.99957 * 163.02867 * 24 22 21 27 27 H 1.48497 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47181 * 119.99579 * 26 24 22 29 29 H 1.48503 * 109.46708 * 239.99491 * 26 24 22 30 30 H 1.08999 * 109.47512 * 299.60612 * 1 2 3 31 31 H 1.09001 * 109.47523 * 59.61080 * 1 2 3 32 32 H 1.09004 * 109.47295 * 179.61111 * 1 2 3 33 33 H 1.08996 * 109.48989 * 293.50073 * 4 2 1 34 34 H 1.08995 * 109.49427 * 53.55062 * 4 2 1 35 35 H 1.08000 * 119.96016 * 180.34503 * 9 7 6 36 36 H 1.07990 * 119.95886 * 180.02562 * 14 10 9 37 37 H 1.09001 * 109.46932 * 303.10348 * 17 5 4 38 38 H 1.08994 * 109.51481 * 183.05343 * 17 5 4 39 39 H 1.08996 * 109.47389 * 300.97194 * 20 18 17 40 40 H 1.09001 * 109.46719 * 60.97328 * 20 18 17 41 41 H 1.09002 * 109.46832 * 180.97078 * 20 18 17 42 42 H 0.97008 * 120.00248 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7302 1.2450 5 7 3.5054 -0.8630 1.1625 6 6 4.0305 -1.3778 2.3541 7 6 3.8516 -0.6902 3.5488 8 9 3.1710 0.4768 3.5621 9 6 4.3661 -1.2054 4.7249 10 6 5.0687 -2.3963 4.7112 11 7 5.6233 -2.9408 5.9709 12 8 6.2420 -3.9899 5.9607 13 8 5.4611 -2.3397 7.0177 14 6 5.2541 -3.0802 3.5237 15 6 4.7365 -2.5750 2.3445 16 9 4.9177 -3.2442 1.1849 17 6 3.9016 -1.6870 0.0128 18 6 3.4628 -0.9960 -1.2827 19 1 3.6508 -1.6546 -2.1307 20 6 4.2416 0.3093 -1.4581 21 7 2.0240 -0.7047 -1.1928 22 6 1.1670 -1.0801 -2.1926 23 1 0.1265 -1.2660 -1.9707 24 6 1.6356 -1.2218 -3.4916 25 7 2.7881 -0.6882 -3.8372 26 14 0.6305 -2.1694 -4.7490 27 1 -0.6162 -2.6661 -4.1133 28 1 0.2859 -1.2748 -5.8832 29 1 1.4231 -3.3210 -5.2499 30 1 -0.3634 0.5077 0.8935 31 1 -0.3634 0.5199 -0.8865 32 1 -0.3634 -1.0277 -0.0070 33 1 1.7810 -0.1604 2.1359 34 1 1.5920 -1.7202 1.2992 35 1 4.2228 -0.6745 5.6544 36 1 5.8029 -4.0102 3.5170 37 1 3.4233 -2.6639 0.0840 38 1 4.9843 -1.8115 0.0099 39 1 4.0569 0.9602 -0.6036 40 1 5.3073 0.0904 -1.5245 41 1 3.9153 0.8071 -2.3713 42 1 3.1158 -0.7875 -4.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -0.399591 kcal Electronic energy + Delta-G solvation = -31219.948076 eV Core-core repulsion = 26648.788874 eV Total energy + Delta-G solvation = -4571.159202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.66421 -49.34991 -42.38598 -40.00148 -38.39216 -36.78179 -35.34868 -32.87987 -31.93790 -31.08775 -30.49274 -28.06326 -26.85746 -26.50217 -24.65548 -23.52508 -23.37333 -22.25276 -21.11446 -19.92645 -19.19615 -18.87619 -17.78448 -17.50333 -17.36049 -17.16259 -16.59519 -16.16914 -16.03827 -15.81469 -15.33860 -15.05841 -14.67456 -14.20155 -13.81428 -13.57195 -13.50816 -13.30323 -13.16625 -12.78310 -12.50633 -11.93521 -11.78306 -11.72764 -11.57150 -11.47472 -11.35086 -11.23594 -11.06193 -10.84869 -10.73158 -10.70887 -10.39634 -10.20981 -10.09930 -9.62287 -9.49578 -9.42376 -8.62743 -8.17435 -6.84813 -5.91641 -3.34527 -0.52676 0.28103 0.96390 1.05260 2.58549 3.22498 3.28291 3.37359 3.38024 3.49025 3.62493 3.99356 4.13927 4.35632 4.49001 4.78335 4.96985 5.00995 5.10138 5.20718 5.33032 5.37096 5.45130 5.61760 5.72634 5.84380 5.86239 6.00853 6.06040 6.12106 6.15935 6.34086 6.49860 6.68752 6.74360 6.83184 6.92051 6.96226 6.99186 7.41344 7.47683 7.62477 7.77013 8.27813 9.06806 9.68130 10.24398 11.16096 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.003325 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.477471 B = 8419.145257 C = 9014.740199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.171 3.829 3 H 0.039 0.961 4 C 0.040 3.960 5 N -0.462 5.462 6 C 0.122 3.878 7 C 0.098 3.902 8 F -0.107 7.107 9 C -0.071 4.071 10 C -0.040 4.040 11 N 0.038 4.962 12 O -0.159 6.159 13 O -0.158 6.158 14 C -0.069 4.069 15 C 0.074 3.926 16 F -0.106 7.106 17 C 0.018 3.982 18 C 0.194 3.806 19 H 0.106 0.894 20 C -0.139 4.139 21 N -0.585 5.585 22 C -0.255 4.255 23 H 0.074 0.926 24 C 0.005 3.995 25 N -0.897 5.897 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -1.684 14.076 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.057 0.943 4 C -0.086 4.086 5 N -0.172 5.172 6 C 0.016 3.984 7 C 0.075 3.925 8 F -0.085 7.085 9 C -0.092 4.092 10 C -0.125 4.125 11 N 0.557 4.443 12 O -0.374 6.374 13 O -0.374 6.374 14 C -0.090 4.090 15 C 0.050 3.950 16 F -0.084 7.084 17 C -0.109 4.109 18 C 0.087 3.913 19 H 0.123 0.877 20 C -0.198 4.198 21 N -0.308 5.308 22 C -0.384 4.384 23 H 0.092 0.908 24 C -0.194 4.194 25 N -0.541 5.541 26 Si 0.731 3.269 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.216 1.216 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.944 -0.894 13.030 13.389 hybrid contribution -0.440 -1.094 -0.546 1.299 sum 2.504 -1.988 12.485 12.888 Atomic orbital electron populations 1.21793 0.95165 1.01703 1.00897 1.20471 0.93013 0.94247 0.85877 0.94327 1.23142 0.81901 1.01316 1.02228 1.59011 1.12900 1.45537 0.99773 1.19830 0.96522 0.89820 0.92188 1.16333 0.99847 0.85139 0.91206 1.91573 1.76630 1.43492 1.96785 1.20721 0.94941 0.93974 0.99574 1.20039 1.09202 0.98630 0.84618 1.43299 0.98731 1.00098 1.02180 1.94558 1.39203 1.10541 1.93099 1.94549 1.63158 1.60325 1.19348 1.20784 0.97900 1.01422 0.88896 1.16916 1.04811 0.90771 0.82474 1.91636 1.93634 1.79153 1.43988 1.23974 1.00847 0.95051 0.91006 1.20585 0.83058 0.95570 0.92133 0.87672 1.22013 0.96870 0.99184 1.01759 1.44348 1.03457 1.64750 1.18196 1.19226 0.92996 1.39782 0.86418 0.90848 1.25026 0.97614 0.99936 0.96795 1.70000 1.21010 1.44918 1.18181 0.86258 0.79566 0.79633 0.81489 1.20355 1.21732 1.21584 0.93904 0.91290 0.92662 0.90139 0.93126 0.81200 0.81321 0.92317 0.89636 0.95100 0.95738 0.90273 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.93 37.15 0.29 -2.02 16 2 C 0.17 3.22 3.25 -67.49 -0.22 3.00 16 3 H 0.04 0.78 7.64 -51.93 -0.40 0.39 16 4 C 0.04 0.63 4.66 -3.70 -0.02 0.62 16 5 N -0.46 -7.39 4.08 -170.66 -0.70 -8.09 16 6 C 0.12 1.63 5.57 -83.56 -0.47 1.17 16 7 C 0.10 1.16 6.95 -39.27 -0.27 0.88 16 8 F -0.11 -1.33 15.12 2.25 0.03 -1.30 16 9 C -0.07 -0.72 9.53 -39.53 -0.38 -1.10 16 10 C -0.04 -0.43 6.85 -79.91 -0.55 -0.98 16 11 N 0.04 0.46 4.45 33.98 0.15 0.61 16 12 O -0.16 -2.04 18.44 -29.46 -0.54 -2.59 16 13 O -0.16 -2.01 18.44 -29.46 -0.54 -2.55 16 14 C -0.07 -0.73 9.53 -39.53 -0.38 -1.11 16 15 C 0.07 0.91 6.96 -39.26 -0.27 0.64 16 16 F -0.11 -1.43 12.25 2.25 0.03 -1.40 16 17 C 0.02 0.31 3.37 -3.70 -0.01 0.30 16 18 C 0.19 4.14 2.35 -67.49 -0.16 3.98 16 19 H 0.11 2.58 6.12 -51.93 -0.32 2.26 16 20 C -0.14 -2.94 8.96 37.16 0.33 -2.61 16 21 N -0.58 -13.04 2.73 -157.00 -0.43 -13.47 16 22 C -0.26 -6.29 8.72 -15.06 -0.13 -6.42 16 23 H 0.07 1.78 6.16 -52.49 -0.32 1.46 16 24 C 0.01 0.13 4.94 -17.43 -0.09 0.04 16 25 N -0.90 -23.69 9.78 55.49 0.54 -23.15 16 26 Si 0.90 20.39 29.59 -169.99 -5.03 15.36 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 32 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 33 H 0.08 1.14 5.91 -51.93 -0.31 0.84 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.17 1.40 7.60 -52.49 -0.40 1.00 16 36 H 0.17 1.50 7.60 -52.49 -0.40 1.10 16 37 H 0.06 1.06 6.89 -51.93 -0.36 0.70 16 38 H 0.09 1.42 6.40 -51.93 -0.33 1.09 16 39 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.92 6.90 -51.93 -0.36 1.56 16 42 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -26.06 341.94 -8.39 -34.45 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.75 Total: 0.56 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.31 Total: -3.60 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.43 Total: -44.09 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -1.09 Total: -5.14 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.06 Total: -2.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.06 -8.39 -34.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.053 kcal (2) G-P(sol) polarization free energy of solvation -26.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds