Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.62862 * 2 1 4 4 C 1.53239 * 109.63183 * 120.39307 * 2 1 3 5 5 N 1.46895 * 109.36246 * 173.52747 * 4 2 1 6 6 C 1.40020 * 110.99852 * 172.76052 * 5 4 2 7 7 C 1.38996 * 120.08572 * 299.72126 * 6 5 4 8 8 F 1.35102 * 120.03998 * 359.97438 * 7 6 5 9 9 C 1.38326 * 119.91347 * 179.67901 * 7 6 5 10 10 C 1.38277 * 120.08652 * 0.62024 * 9 7 6 11 11 N 1.48024 * 119.91415 * 179.69927 * 10 9 7 12 12 O 1.21806 * 119.99864 * 179.97438 * 11 10 9 13 13 O 1.21794 * 120.00297 * 359.97438 * 11 10 9 14 14 C 1.38278 * 120.17232 * 359.68186 * 10 9 7 15 15 C 1.38339 * 120.08253 * 359.97438 * 14 10 9 16 16 F 1.35097 * 120.03774 * 180.02562 * 15 14 10 17 17 C 1.46899 * 111.27129 * 296.93415 * 5 4 2 18 18 C 1.53243 * 109.36201 * 63.06525 * 17 5 4 19 19 H 1.09001 * 109.62666 * 186.47477 * 18 17 5 20 20 C 1.53004 * 109.62597 * 65.89206 * 18 17 5 21 21 N 1.47076 * 108.52052 * 306.18418 * 18 17 5 22 22 C 1.36939 * 120.88332 * 231.20876 * 21 18 17 23 23 H 1.07997 * 120.00301 * 153.35746 * 22 21 18 24 24 C 1.38817 * 119.99577 * 333.35612 * 22 21 18 25 25 N 1.31617 * 119.99771 * 343.02094 * 24 22 21 26 26 Si 1.86798 * 119.99957 * 163.02867 * 24 22 21 27 27 H 1.48497 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47181 * 119.99579 * 26 24 22 29 29 H 1.48503 * 109.46708 * 239.99491 * 26 24 22 30 30 H 1.08999 * 109.47512 * 299.60612 * 1 2 3 31 31 H 1.09001 * 109.47523 * 59.61080 * 1 2 3 32 32 H 1.09004 * 109.47295 * 179.61111 * 1 2 3 33 33 H 1.08996 * 109.48989 * 293.50073 * 4 2 1 34 34 H 1.08995 * 109.49427 * 53.55062 * 4 2 1 35 35 H 1.08000 * 119.96016 * 180.34503 * 9 7 6 36 36 H 1.07990 * 119.95886 * 180.02562 * 14 10 9 37 37 H 1.09001 * 109.46932 * 303.10348 * 17 5 4 38 38 H 1.08994 * 109.51481 * 183.05343 * 17 5 4 39 39 H 1.08996 * 109.47389 * 300.97194 * 20 18 17 40 40 H 1.09001 * 109.46719 * 60.97328 * 20 18 17 41 41 H 1.09002 * 109.46832 * 180.97078 * 20 18 17 42 42 H 0.97008 * 120.00248 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7302 1.2450 5 7 3.5054 -0.8630 1.1625 6 6 4.0305 -1.3778 2.3541 7 6 3.8516 -0.6902 3.5488 8 9 3.1710 0.4768 3.5621 9 6 4.3661 -1.2054 4.7249 10 6 5.0687 -2.3963 4.7112 11 7 5.6233 -2.9408 5.9709 12 8 6.2420 -3.9899 5.9607 13 8 5.4611 -2.3397 7.0177 14 6 5.2541 -3.0802 3.5237 15 6 4.7365 -2.5750 2.3445 16 9 4.9177 -3.2442 1.1849 17 6 3.9016 -1.6870 0.0128 18 6 3.4628 -0.9960 -1.2827 19 1 3.6508 -1.6546 -2.1307 20 6 4.2416 0.3093 -1.4581 21 7 2.0240 -0.7047 -1.1928 22 6 1.1670 -1.0801 -2.1926 23 1 0.1265 -1.2660 -1.9707 24 6 1.6356 -1.2218 -3.4916 25 7 2.7881 -0.6882 -3.8372 26 14 0.6305 -2.1694 -4.7490 27 1 -0.6162 -2.6661 -4.1133 28 1 0.2859 -1.2748 -5.8832 29 1 1.4231 -3.3210 -5.2499 30 1 -0.3634 0.5077 0.8935 31 1 -0.3634 0.5199 -0.8865 32 1 -0.3634 -1.0277 -0.0070 33 1 1.7810 -0.1604 2.1359 34 1 1.5920 -1.7202 1.2992 35 1 4.2228 -0.6745 5.6544 36 1 5.8029 -4.0102 3.5170 37 1 3.4233 -2.6639 0.0840 38 1 4.9843 -1.8115 0.0099 39 1 4.0569 0.9602 -0.6036 40 1 5.3073 0.0904 -1.5245 41 1 3.9153 0.8071 -2.3713 42 1 3.1158 -0.7875 -4.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -12.549781 kcal Electronic energy + Delta-G solvation = -31220.474948 eV Core-core repulsion = 26648.788874 eV Total energy + Delta-G solvation = -4571.686074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.68372 -50.30026 -43.33307 -41.15968 -39.61792 -37.74423 -36.77385 -34.44232 -33.54066 -31.99625 -31.75932 -29.71649 -28.11869 -27.75595 -26.21809 -24.84769 -24.49053 -23.31489 -22.60400 -20.91514 -20.67282 -19.94310 -18.73533 -18.65911 -18.55281 -18.10320 -17.71373 -17.54315 -17.04352 -16.98133 -16.77398 -16.31858 -15.95803 -15.73794 -15.29189 -15.13216 -14.75553 -14.57898 -14.26419 -13.78562 -13.64998 -13.43209 -13.30254 -13.01029 -12.84402 -12.80311 -12.74023 -12.46046 -12.38428 -12.33460 -12.32656 -12.28237 -11.96265 -11.77238 -11.65721 -11.23567 -11.00547 -10.50241 -10.37503 -9.36861 -8.64728 -7.82920 -5.26060 -1.48776 -0.60949 -0.01673 0.11090 1.45469 1.50030 1.57176 1.65710 2.18801 2.40350 2.52036 2.70070 3.05651 3.26027 3.32464 3.45804 3.59294 3.75792 4.00872 4.01269 4.13034 4.22150 4.28295 4.36653 4.42970 4.47196 4.60372 4.64601 4.68455 4.83471 4.88866 4.97806 5.07244 5.15524 5.19233 5.34390 5.36635 5.52965 5.68838 5.70234 5.78848 5.95984 6.41809 6.41878 7.19057 7.87194 8.39787 9.22691 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.003325 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.477471 B = 8419.145257 C = 9014.740199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.165 3.835 3 H 0.024 0.976 4 C 0.050 3.950 5 N -0.474 5.474 6 C 0.107 3.893 7 C 0.103 3.897 8 F -0.109 7.109 9 C -0.052 4.052 10 C -0.035 4.035 11 N 0.038 4.962 12 O -0.170 6.170 13 O -0.158 6.158 14 C -0.054 4.054 15 C 0.071 3.929 16 F -0.115 7.115 17 C 0.038 3.962 18 C 0.191 3.809 19 H 0.069 0.931 20 C -0.122 4.122 21 N -0.600 5.600 22 C -0.252 4.252 23 H 0.076 0.924 24 C -0.045 4.045 25 N -0.922 5.922 26 Si 0.955 3.045 27 H -0.270 1.270 28 H -0.298 1.298 29 H -0.295 1.295 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.195 0.805 36 H 0.187 0.813 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -2.078 16.828 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.075 4.075 5 N -0.186 5.186 6 C 0.003 3.997 7 C 0.080 3.920 8 F -0.087 7.087 9 C -0.072 4.072 10 C -0.120 4.120 11 N 0.556 4.444 12 O -0.383 6.383 13 O -0.374 6.374 14 C -0.074 4.074 15 C 0.047 3.953 16 F -0.093 7.093 17 C -0.089 4.089 18 C 0.084 3.916 19 H 0.087 0.913 20 C -0.181 4.181 21 N -0.323 5.323 22 C -0.383 4.383 23 H 0.094 0.906 24 C -0.241 4.241 25 N -0.568 5.568 26 Si 0.785 3.215 27 H -0.194 1.194 28 H -0.226 1.226 29 H -0.222 1.222 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.212 0.788 36 H 0.204 0.796 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.842 -1.308 15.828 16.134 hybrid contribution -0.385 -0.956 -1.238 1.611 sum 2.457 -2.263 14.590 14.967 Atomic orbital electron populations 1.21712 0.93723 1.01661 1.01661 1.20636 0.94329 0.93491 0.85719 0.95828 1.22947 0.82296 1.01010 1.01240 1.58945 1.12970 1.46333 1.00323 1.19830 0.97341 0.90776 0.91711 1.16277 0.99855 0.84894 0.90968 1.91571 1.76725 1.43670 1.96769 1.20872 0.93189 0.93300 0.99842 1.20076 1.08962 0.98789 0.84167 1.43415 0.98608 1.00008 1.02399 1.94571 1.39679 1.10852 1.93232 1.94551 1.62990 1.60192 1.19706 1.20869 0.96903 1.01676 0.87988 1.16923 1.05079 0.90641 0.82657 1.91608 1.93729 1.79295 1.44693 1.23602 1.01127 0.94171 0.90024 1.20446 0.83020 0.95069 0.93079 0.91323 1.21797 0.97489 0.98949 0.99911 1.44561 1.03621 1.65399 1.18747 1.19491 0.93416 1.38377 0.86967 0.90639 1.25626 0.98706 1.01359 0.98404 1.70156 1.22337 1.46439 1.17837 0.85394 0.78610 0.78097 0.79405 1.19413 1.22575 1.22238 0.90381 0.93330 0.92968 0.87845 0.93377 0.78815 0.79572 0.93044 0.88657 0.94674 0.94489 0.93884 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.93 71.98 0.57 -3.66 16 2 C 0.16 6.11 3.25 44.96 0.15 6.26 16 3 H 0.02 0.96 7.64 -2.39 -0.02 0.94 16 4 C 0.05 1.53 4.66 86.38 0.40 1.93 16 5 N -0.47 -14.49 4.08 -693.85 -2.83 -17.32 16 6 C 0.11 2.63 5.57 38.20 0.21 2.84 16 7 C 0.10 2.10 6.95 22.47 0.16 2.26 16 8 F -0.11 -2.38 15.12 44.97 0.68 -1.70 16 9 C -0.05 -0.85 9.53 22.30 0.21 -0.64 16 10 C -0.03 -0.64 6.85 36.39 0.25 -0.39 16 11 N 0.04 0.80 4.45 -46.41 -0.21 0.60 16 12 O -0.17 -3.93 18.44 18.88 0.35 -3.58 16 13 O -0.16 -3.50 18.44 18.89 0.35 -3.15 16 14 C -0.05 -0.97 9.53 22.30 0.21 -0.76 16 15 C 0.07 1.58 6.96 22.47 0.16 1.73 16 16 F -0.11 -2.94 12.25 44.97 0.55 -2.39 16 17 C 0.04 1.32 3.37 86.38 0.29 1.61 16 18 C 0.19 8.34 2.35 44.96 0.11 8.45 16 19 H 0.07 3.52 6.12 -2.39 -0.01 3.50 16 20 C -0.12 -5.29 8.96 71.98 0.65 -4.65 16 21 N -0.60 -27.18 2.73 -650.64 -1.78 -28.96 16 22 C -0.25 -12.66 8.72 84.03 0.73 -11.93 16 23 H 0.08 3.68 6.16 -2.91 -0.02 3.66 16 24 C -0.05 -2.36 4.94 84.86 0.42 -1.94 16 25 N -0.92 -50.68 9.78 21.65 0.21 -50.47 16 26 Si 0.96 42.96 29.59 68.60 2.03 44.99 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 32 H 0.05 1.72 7.54 -2.38 -0.02 1.70 16 33 H 0.10 2.65 5.91 -2.39 -0.01 2.64 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.19 2.30 7.60 -2.91 -0.02 2.28 16 36 H 0.19 2.72 7.60 -2.92 -0.02 2.70 16 37 H 0.05 1.85 6.89 -2.39 -0.02 1.83 16 38 H 0.10 3.11 6.40 -2.39 -0.02 3.09 16 39 H 0.03 1.44 7.09 -2.39 -0.02 1.42 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 2.16 6.90 -2.39 -0.02 2.14 16 42 H 0.25 13.35 8.31 -92.70 -0.77 12.58 16 Total: -1.00 -57.31 341.94 4.95 -52.36 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.08 Total: 8.49 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.51 Total: 1.12 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.60 Total: -96.15 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.70 Total: -6.73 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 1.23 Total: -4.09 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -57.31 4.95 -52.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.807 kcal (2) G-P(sol) polarization free energy of solvation -57.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds