Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34638 * 116.99744 * 2 1 4 4 O 1.21510 * 119.99999 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00181 * 180.02562 * 3 2 1 6 6 C 1.46494 * 119.99755 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.27906 * 327.08814 * 6 5 3 8 8 C 1.54593 * 110.39513 * 89.23863 * 6 5 3 9 9 C 1.54932 * 102.92580 * 140.91143 * 8 6 5 10 10 N 1.48540 * 103.22548 * 322.58681 * 9 8 6 11 11 C 1.46899 * 110.99858 * 159.72092 * 10 9 8 12 12 N 1.46500 * 109.47405 * 52.60646 * 11 10 9 13 13 N 1.40173 * 126.13976 * 270.00077 * 12 11 10 14 14 C 1.32237 * 107.75492 * 180.02562 * 13 12 11 15 15 C 1.40122 * 125.92870 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00372 * 174.23323 * 15 14 13 17 17 C 1.40040 * 119.99274 * 354.24225 * 15 14 13 18 18 N 1.30796 * 120.00681 * 6.03844 * 17 15 14 19 19 Si 1.86805 * 119.99697 * 186.04376 * 17 15 14 20 20 H 1.48495 * 109.47299 * 94.97504 * 19 17 15 21 21 H 1.48501 * 109.47203 * 214.97981 * 19 17 15 22 22 H 1.48499 * 109.46808 * 334.97769 * 19 17 15 23 23 N 1.38502 * 108.14907 * 359.97438 * 14 13 12 24 24 C 1.46505 * 125.83459 * 180.02562 * 23 14 13 25 25 C 1.34726 * 108.33093 * 0.02562 * 23 14 13 26 26 S 1.71194 * 125.97428 * 180.26042 * 25 23 14 27 27 C 1.47902 * 105.82032 * 39.20492 * 10 9 8 28 28 H 1.08997 * 109.46862 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47500 * 59.99430 * 1 2 3 30 30 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99510 * 0.02562 * 5 3 2 32 32 H 1.08994 * 110.72541 * 259.27201 * 8 6 5 33 33 H 1.09003 * 110.72377 * 22.37179 * 8 6 5 34 34 H 1.09000 * 110.66960 * 204.15504 * 9 8 6 35 35 H 1.08995 * 110.67110 * 81.02172 * 9 8 6 36 36 H 1.09002 * 109.47235 * 292.60135 * 11 10 9 37 37 H 1.09001 * 109.46901 * 172.60393 * 11 10 9 38 38 H 0.96998 * 120.00329 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47454 * 269.98253 * 24 23 14 40 40 H 1.09000 * 109.47123 * 29.99099 * 24 23 14 41 41 H 1.08997 * 109.46725 * 149.98719 * 24 23 14 42 42 H 1.09004 * 109.91351 * 94.02338 * 27 10 9 43 43 H 1.09000 * 109.91295 * 215.31512 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0741 2.5757 0.0000 7 1 3.4805 3.3022 -0.5548 8 6 4.3021 3.0635 1.4492 9 6 5.7048 3.7175 1.3780 10 7 6.4471 2.8292 0.4472 11 6 7.6129 3.5189 -0.1213 12 7 8.4249 4.0792 0.9618 13 7 8.2886 5.3574 1.5208 14 6 9.2035 5.4832 2.4673 15 6 9.4055 6.6134 3.2706 16 1 10.1205 6.5804 4.0793 17 6 8.6800 7.7857 3.0247 18 7 7.7313 7.7912 2.1243 19 14 9.0673 9.3419 3.9828 20 1 10.0097 10.1826 3.2016 21 1 7.8129 10.0990 4.2253 22 1 9.6870 8.9812 5.2832 23 7 9.9275 4.3040 2.5270 24 6 11.0367 4.0239 3.4421 25 6 9.4374 3.4585 1.5996 26 16 9.9973 1.8705 1.2904 27 6 5.4827 2.4581 -0.6110 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9375 0.4568 -0.0013 32 1 3.5480 3.7979 1.7320 33 1 4.2999 2.2235 2.1438 34 1 6.1762 3.7247 2.3608 35 1 5.6383 4.7279 0.9747 36 1 7.2761 4.3225 -0.7761 37 1 8.2108 2.8099 -0.6941 38 1 7.2291 8.6033 1.9538 39 1 11.9756 4.3267 2.9786 40 1 10.8928 4.5801 4.3684 41 1 11.0670 2.9564 3.6603 42 1 5.5788 3.1394 -1.4565 43 1 5.6629 1.4329 -0.9345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884484658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = 16.480395 kcal Electronic energy + Delta-G solvation = -27747.619359 eV Core-core repulsion = 23763.325266 eV Total energy + Delta-G solvation = -3984.294093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95522 -40.61819 -38.93022 -36.65224 -35.17342 -34.15708 -33.75963 -31.39105 -30.11827 -28.76286 -27.76862 -26.93129 -26.61455 -24.46938 -22.08510 -21.97056 -21.04503 -20.77494 -20.56967 -18.93410 -17.76655 -17.19280 -16.83238 -16.59934 -16.12392 -15.75085 -15.57615 -15.13815 -14.83633 -14.67381 -14.18995 -14.07009 -13.77912 -13.68046 -13.32523 -12.84594 -12.36053 -12.28330 -12.20953 -12.10218 -11.85774 -11.85494 -11.71523 -11.53958 -11.25153 -11.06050 -10.97451 -10.85964 -10.64926 -10.63893 -10.53817 -10.12345 -9.59577 -9.34667 -9.26358 -8.94199 -8.25120 -7.11415 -6.76817 -6.67405 -5.20079 2.02909 2.29692 2.55909 2.68364 2.73673 2.87737 2.91628 3.34082 3.47072 3.60594 4.00322 4.10773 4.21813 4.49854 4.77110 4.78112 4.92100 4.99676 5.03981 5.19035 5.24301 5.36678 5.39656 5.51611 5.63738 5.65997 5.70723 5.83419 5.98870 6.06844 6.10268 6.16185 6.24248 6.34005 6.37530 6.50643 6.75248 6.89191 6.96132 7.03655 7.26760 7.53185 7.72481 8.18266 8.19053 8.29686 9.08820 9.86092 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003045 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.486958 B = 9192.282447 C =10895.674564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.646 3.354 4 O -0.574 6.574 5 N -0.697 5.697 6 C 0.155 3.845 7 H 0.101 0.899 8 C -0.134 4.134 9 C 0.050 3.950 10 N -0.521 5.521 11 C 0.321 3.679 12 N -0.383 5.383 13 N -0.345 5.345 14 C 0.376 3.624 15 C -0.437 4.437 16 H 0.098 0.902 17 C 0.077 3.923 18 N -0.737 5.737 19 Si 0.928 3.072 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.259 1.259 23 N -0.517 5.517 24 C 0.100 3.900 25 C 0.480 3.520 26 S -0.702 6.702 27 C 0.037 3.963 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.410 0.590 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.285 0.715 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 -4.986 -2.258 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.288 6.288 3 C 0.399 3.601 4 O -0.463 6.463 5 N -0.356 5.356 6 C 0.051 3.949 7 H 0.119 0.881 8 C -0.173 4.173 9 C -0.078 4.078 10 N -0.248 5.248 11 C 0.109 3.891 12 N -0.169 5.169 13 N -0.176 5.176 14 C 0.127 3.873 15 C -0.478 4.478 16 H 0.116 0.884 17 C -0.149 4.149 18 N -0.361 5.361 19 Si 0.751 3.249 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.183 1.183 23 N -0.218 5.218 24 C -0.043 4.043 25 C 0.112 3.888 26 S -0.578 6.578 27 C -0.092 4.092 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.706 -5.329 -2.871 11.439 hybrid contribution 0.288 1.602 0.574 1.726 sum -9.418 -3.727 -2.297 10.386 Atomic orbital electron populations 1.23175 0.74492 1.03363 1.02716 1.86248 1.24154 1.31223 1.87149 1.18178 0.83590 0.82121 0.76256 1.91003 1.64656 1.34860 1.55734 1.44831 1.02807 1.10414 1.77537 1.21858 0.92433 0.82985 0.97616 0.88126 1.22974 0.97311 1.01160 0.95864 1.23105 0.91531 0.94929 0.98230 1.65038 1.05835 1.39479 1.14400 1.21958 0.87895 0.94978 0.84310 1.49014 1.25250 1.12661 1.30002 1.79365 1.25820 0.93636 1.18826 1.21271 0.86775 0.85537 0.93736 1.18368 1.22793 0.92720 1.13947 0.88448 1.25826 0.93392 1.00573 0.95123 1.69864 1.12974 1.29434 1.23840 0.85956 0.79078 0.79659 0.80215 1.19154 1.19771 1.18252 1.45991 1.31098 1.13440 1.31293 1.21755 0.86848 1.03543 0.92119 1.22896 0.87261 0.92772 0.85880 1.92740 1.78418 1.02063 1.84592 1.23017 0.89602 1.02785 0.93807 0.91866 0.91909 0.88045 0.75399 0.90364 0.90385 0.89990 0.91879 0.91670 0.86899 0.90360 0.91469 0.89830 0.89185 0.92028 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -4.17 10.62 -40.32 -0.43 -4.60 16 3 C 0.65 8.46 8.75 54.06 0.47 8.93 16 4 O -0.57 -9.19 15.78 -19.28 -0.30 -9.50 16 5 N -0.70 -7.99 5.07 -57.40 -0.29 -8.29 16 6 C 0.16 1.93 3.34 -66.58 -0.22 1.71 16 7 H 0.10 1.31 7.56 -51.93 -0.39 0.92 16 8 C -0.13 -1.91 6.78 -24.87 -0.17 -2.07 16 9 C 0.05 0.85 5.42 -1.90 -0.01 0.84 16 10 N -0.52 -8.53 5.49 -234.34 -1.29 -9.82 16 11 C 0.32 5.83 5.97 -63.32 -0.38 5.45 16 12 N -0.38 -8.47 3.17 -65.05 -0.21 -8.67 16 13 N -0.34 -8.30 10.25 31.21 0.32 -7.98 16 14 C 0.38 8.91 7.50 -155.27 -1.16 7.75 16 15 C -0.44 -9.83 8.99 -38.20 -0.34 -10.17 16 16 H 0.10 1.98 7.08 -52.49 -0.37 1.61 16 17 C 0.08 1.69 5.49 -17.32 -0.10 1.59 16 18 N -0.74 -17.08 11.93 55.55 0.66 -16.41 16 19 Si 0.93 16.19 29.57 -169.99 -5.03 11.16 16 20 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 21 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 22 H -0.26 -4.40 7.11 56.52 0.40 -3.99 16 23 N -0.52 -11.42 3.17 -124.66 -0.39 -11.82 16 24 C 0.10 1.76 10.67 59.85 0.64 2.40 16 25 C 0.48 11.15 7.84 -86.94 -0.68 10.46 16 26 S -0.70 -17.02 29.50 -107.50 -3.17 -20.19 16 27 C 0.04 0.46 6.47 -2.75 -0.02 0.44 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.41 3.97 8.46 -40.82 -0.35 3.63 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 34 H 0.08 1.68 8.12 -51.93 -0.42 1.26 16 35 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 36 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 37 H 0.11 2.04 7.65 -51.93 -0.40 1.64 16 38 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.28 7.27 -51.93 -0.38 0.91 16 41 H 0.09 1.57 7.61 -51.93 -0.40 1.17 16 42 H 0.06 0.69 7.57 -51.93 -0.39 0.29 16 43 H 0.09 1.01 7.65 -51.93 -0.40 0.61 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -31.36 375.45 -11.35 -42.71 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.98 Total: 8.89 kcal Atomic # 6 Polarization: 29.76 SS G_CDS: -0.90 Total: 28.86 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.20 Total: -62.99 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.73 Total: -14.10 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: -17.02 SS G_CDS: -3.17 Total: -20.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.36 -11.35 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884484658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.189 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds