Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34638 * 116.99744 * 2 1 4 4 O 1.21510 * 119.99999 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00181 * 180.02562 * 3 2 1 6 6 C 1.46494 * 119.99755 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.27906 * 327.08814 * 6 5 3 8 8 C 1.54593 * 110.39513 * 89.23863 * 6 5 3 9 9 C 1.54932 * 102.92580 * 140.91143 * 8 6 5 10 10 N 1.48540 * 103.22548 * 322.58681 * 9 8 6 11 11 C 1.46899 * 110.99858 * 159.72092 * 10 9 8 12 12 N 1.46500 * 109.47405 * 52.60646 * 11 10 9 13 13 N 1.40173 * 126.13976 * 270.00077 * 12 11 10 14 14 C 1.32237 * 107.75492 * 180.02562 * 13 12 11 15 15 C 1.40122 * 125.92870 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00372 * 174.23323 * 15 14 13 17 17 C 1.40040 * 119.99274 * 354.24225 * 15 14 13 18 18 N 1.30796 * 120.00681 * 6.03844 * 17 15 14 19 19 Si 1.86805 * 119.99697 * 186.04376 * 17 15 14 20 20 H 1.48495 * 109.47299 * 94.97504 * 19 17 15 21 21 H 1.48501 * 109.47203 * 214.97981 * 19 17 15 22 22 H 1.48499 * 109.46808 * 334.97769 * 19 17 15 23 23 N 1.38502 * 108.14907 * 359.97438 * 14 13 12 24 24 C 1.46505 * 125.83459 * 180.02562 * 23 14 13 25 25 C 1.34726 * 108.33093 * 0.02562 * 23 14 13 26 26 S 1.71194 * 125.97428 * 180.26042 * 25 23 14 27 27 C 1.47902 * 105.82032 * 39.20492 * 10 9 8 28 28 H 1.08997 * 109.46862 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47500 * 59.99430 * 1 2 3 30 30 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99510 * 0.02562 * 5 3 2 32 32 H 1.08994 * 110.72541 * 259.27201 * 8 6 5 33 33 H 1.09003 * 110.72377 * 22.37179 * 8 6 5 34 34 H 1.09000 * 110.66960 * 204.15504 * 9 8 6 35 35 H 1.08995 * 110.67110 * 81.02172 * 9 8 6 36 36 H 1.09002 * 109.47235 * 292.60135 * 11 10 9 37 37 H 1.09001 * 109.46901 * 172.60393 * 11 10 9 38 38 H 0.96998 * 120.00329 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47454 * 269.98253 * 24 23 14 40 40 H 1.09000 * 109.47123 * 29.99099 * 24 23 14 41 41 H 1.08997 * 109.46725 * 149.98719 * 24 23 14 42 42 H 1.09004 * 109.91351 * 94.02338 * 27 10 9 43 43 H 1.09000 * 109.91295 * 215.31512 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0741 2.5757 0.0000 7 1 3.4805 3.3022 -0.5548 8 6 4.3021 3.0635 1.4492 9 6 5.7048 3.7175 1.3780 10 7 6.4471 2.8292 0.4472 11 6 7.6129 3.5189 -0.1213 12 7 8.4249 4.0792 0.9618 13 7 8.2886 5.3574 1.5208 14 6 9.2035 5.4832 2.4673 15 6 9.4055 6.6134 3.2706 16 1 10.1205 6.5804 4.0793 17 6 8.6800 7.7857 3.0247 18 7 7.7313 7.7912 2.1243 19 14 9.0673 9.3419 3.9828 20 1 10.0097 10.1826 3.2016 21 1 7.8129 10.0990 4.2253 22 1 9.6870 8.9812 5.2832 23 7 9.9275 4.3040 2.5270 24 6 11.0367 4.0239 3.4421 25 6 9.4374 3.4585 1.5996 26 16 9.9973 1.8705 1.2904 27 6 5.4827 2.4581 -0.6110 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9375 0.4568 -0.0013 32 1 3.5480 3.7979 1.7320 33 1 4.2999 2.2235 2.1438 34 1 6.1762 3.7247 2.3608 35 1 5.6383 4.7279 0.9747 36 1 7.2761 4.3225 -0.7761 37 1 8.2108 2.8099 -0.6941 38 1 7.2291 8.6033 1.9538 39 1 11.9756 4.3267 2.9786 40 1 10.8928 4.5801 4.3684 41 1 11.0670 2.9564 3.6603 42 1 5.5788 3.1394 -1.4565 43 1 5.6629 1.4329 -0.9345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884484658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -4.170492 kcal Electronic energy + Delta-G solvation = -27748.514849 eV Core-core repulsion = 23763.325266 eV Total energy + Delta-G solvation = -3985.189583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65297 -41.64138 -40.12605 -37.67658 -36.54713 -35.75475 -35.16742 -32.89598 -31.62644 -29.90148 -29.02321 -28.28519 -27.93978 -25.96302 -23.57833 -23.09365 -22.69663 -22.13778 -21.76180 -19.91709 -19.43291 -18.46311 -18.19018 -17.61316 -17.48002 -17.41727 -16.78476 -16.65257 -16.37465 -16.14442 -15.40429 -15.10154 -15.01285 -14.90118 -14.58463 -14.12979 -13.77455 -13.56561 -13.45636 -13.33193 -13.15106 -13.09421 -12.95629 -12.87664 -12.70617 -12.48054 -12.41397 -12.07566 -11.98814 -11.80848 -11.76031 -11.73833 -11.36609 -10.93776 -10.67123 -10.35610 -9.58484 -8.80482 -8.63151 -8.53435 -6.96411 0.53533 0.83017 1.13514 1.27334 1.44891 1.59963 1.64375 1.68684 1.85267 2.12362 2.42183 2.83350 3.08314 3.21154 3.38594 3.55715 3.63092 4.00102 4.07219 4.15746 4.18939 4.25869 4.34844 4.36829 4.46567 4.52677 4.56135 4.59048 4.71053 4.71379 4.78465 4.87283 4.90695 4.95609 5.10132 5.20322 5.28041 5.36174 5.53166 5.67049 5.90392 6.07605 6.31790 6.48231 6.57293 7.22620 7.32525 8.23104 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003045 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.486958 B = 9192.282447 C =10895.674564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.646 3.354 4 O -0.606 6.606 5 N -0.686 5.686 6 C 0.167 3.833 7 H 0.100 0.900 8 C -0.124 4.124 9 C 0.064 3.936 10 N -0.529 5.529 11 C 0.316 3.684 12 N -0.378 5.378 13 N -0.367 5.367 14 C 0.354 3.646 15 C -0.450 4.450 16 H 0.117 0.883 17 C 0.038 3.962 18 N -0.772 5.772 19 Si 1.003 2.997 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.247 1.247 23 N -0.518 5.518 24 C 0.095 3.905 25 C 0.467 3.533 26 S -0.733 6.733 27 C 0.041 3.959 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.421 0.579 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.291 0.709 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -4.837 -2.042 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.287 6.287 3 C 0.399 3.601 4 O -0.498 6.498 5 N -0.346 5.346 6 C 0.062 3.938 7 H 0.118 0.882 8 C -0.163 4.163 9 C -0.065 4.065 10 N -0.255 5.255 11 C 0.105 3.895 12 N -0.164 5.164 13 N -0.200 5.200 14 C 0.105 3.895 15 C -0.492 4.492 16 H 0.135 0.865 17 C -0.185 4.185 18 N -0.397 5.397 19 Si 0.822 3.178 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.170 1.170 23 N -0.219 5.219 24 C -0.046 4.046 25 C 0.097 3.903 26 S -0.610 6.610 27 C -0.087 4.087 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.259 0.741 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.965 -5.235 -2.662 11.567 hybrid contribution 0.297 1.545 0.498 1.650 sum -9.667 -3.690 -2.164 10.571 Atomic orbital electron populations 1.23506 0.72747 1.05655 1.02565 1.86265 1.25845 1.29915 1.86709 1.18313 0.83792 0.82256 0.75752 1.90984 1.65431 1.36092 1.57270 1.44697 1.02554 1.10447 1.76903 1.21649 0.92590 0.83508 0.96061 0.88172 1.22859 0.95316 1.00828 0.97304 1.22793 0.92889 0.94496 0.96291 1.65007 1.06221 1.38555 1.15753 1.22169 0.88330 0.95377 0.83613 1.49341 1.25031 1.12067 1.29961 1.79299 1.26520 0.94559 1.19621 1.21664 0.87198 0.86357 0.94241 1.18883 1.23284 0.92742 1.14255 0.86521 1.26813 0.92659 1.03391 0.95663 1.69949 1.13899 1.30657 1.25186 0.84845 0.78717 0.75190 0.79045 1.18936 1.19723 1.16979 1.46259 1.31573 1.12711 1.31319 1.22024 0.86255 1.03877 0.92464 1.22867 0.87995 0.92709 0.86751 1.92662 1.79310 1.03408 1.85595 1.23126 0.88219 1.04353 0.93031 0.92270 0.91883 0.84548 0.74131 0.90476 0.90526 0.93967 0.93788 0.90739 0.86674 0.89804 0.89948 0.87636 0.89349 0.90175 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -7.72 10.62 -55.48 -0.59 -8.31 16 3 C 0.65 16.12 8.75 129.79 1.14 17.26 16 4 O -0.61 -19.02 15.78 19.81 0.31 -18.71 16 5 N -0.69 -14.69 5.07 -565.92 -2.87 -17.55 16 6 C 0.17 3.96 3.34 45.87 0.15 4.12 16 7 H 0.10 2.49 7.56 -2.39 -0.02 2.47 16 8 C -0.12 -3.53 6.78 31.80 0.22 -3.31 16 9 C 0.06 2.24 5.42 86.65 0.47 2.71 16 10 N -0.53 -17.27 5.49 -895.31 -4.92 -22.18 16 11 C 0.32 11.56 5.97 170.81 1.02 12.58 16 12 N -0.38 -17.01 3.17 -359.73 -1.14 -18.15 16 13 N -0.37 -18.06 10.25 -55.17 -0.57 -18.63 16 14 C 0.35 16.90 7.50 133.52 1.00 17.90 16 15 C -0.45 -19.99 8.99 23.16 0.21 -19.78 16 16 H 0.12 4.55 7.08 -2.91 -0.02 4.53 16 17 C 0.04 1.63 5.49 85.28 0.47 2.10 16 18 N -0.77 -35.98 11.93 21.84 0.26 -35.72 16 19 Si 1.00 31.97 29.57 68.60 2.03 34.00 16 20 H -0.26 -8.32 7.11 99.48 0.71 -7.62 16 21 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 22 H -0.25 -7.34 7.11 99.48 0.71 -6.63 16 23 N -0.52 -22.94 3.17 -548.31 -1.74 -24.68 16 24 C 0.10 3.26 10.67 127.77 1.36 4.62 16 25 C 0.47 21.94 7.84 179.06 1.40 23.34 16 26 S -0.73 -35.71 29.50 -56.49 -1.67 -37.38 16 27 C 0.04 0.94 6.47 86.45 0.56 1.50 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.42 7.30 8.46 -92.71 -0.78 6.51 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 34 H 0.04 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.04 1.71 8.02 -2.39 -0.02 1.69 16 36 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 37 H 0.12 4.15 7.65 -2.39 -0.02 4.13 16 38 H 0.29 12.32 8.30 -92.71 -0.77 11.55 16 39 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.11 3.09 7.27 -2.39 -0.02 3.07 16 41 H 0.09 3.05 7.61 -2.39 -0.02 3.03 16 42 H 0.08 1.62 7.57 -2.39 -0.02 1.61 16 43 H 0.11 2.19 7.65 -2.39 -0.02 2.18 16 Total: -1.00 -68.37 375.45 -1.42 -69.79 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.26 Total: 32.58 kcal Atomic # 6 Polarization: 55.75 SS G_CDS: 9.19 Total: 64.94 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -10.97 Total: -136.91 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.28 Total: -27.02 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 34.00 kcal Atomic # 16 Polarization: -35.71 SS G_CDS: -1.67 Total: -37.38 kcal Total: -68.37 -1.42 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884484658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.623 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds