Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47090 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46633 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46847 * 119.99898 * 3 2 1 7 7 C 1.37885 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00128 * 179.72147 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.74457 * 278.74235 * 9 7 2 11 11 N 1.47810 * 86.03389 * 222.08197 * 10 9 7 12 12 C 1.34780 * 134.45443 * 204.63866 * 11 10 9 13 13 O 1.21281 * 120.00109 * 174.82697 * 12 11 10 14 14 C 1.50700 * 119.99699 * 354.82041 * 12 11 10 15 15 H 1.08998 * 109.37253 * 23.25671 * 14 12 11 16 16 C 1.50734 * 109.37469 * 263.49363 * 14 12 11 17 17 C 1.38118 * 119.61147 * 78.33684 * 16 14 12 18 18 C 1.38299 * 120.20896 * 180.25865 * 17 16 14 19 19 C 1.38396 * 120.37258 * 0.02625 * 18 17 16 20 20 C 1.37972 * 120.07234 * 359.85963 * 19 18 17 21 21 C 1.39468 * 120.79329 * 258.35593 * 16 14 12 22 22 C 1.48077 * 120.08652 * 359.41322 * 21 16 14 23 23 O 1.21474 * 121.18670 * 190.40462 * 22 21 16 24 24 O 1.35765 * 117.63054 * 10.37831 * 22 21 16 25 25 C 1.45354 * 114.23230 * 320.58013 * 24 22 21 26 26 C 1.53343 * 113.45118 * 189.81089 * 25 24 22 27 27 C 1.53858 * 86.96358 * 89.44032 * 26 25 24 28 28 C 1.53320 * 113.49295 * 287.70382 * 25 24 22 29 29 C 1.47576 * 91.05270 * 24.54857 * 11 10 9 30 30 H 0.97009 * 119.99489 * 0.02562 * 1 2 3 31 31 H 1.09005 * 112.93987 * 50.33114 * 9 7 2 32 32 H 1.08999 * 113.76259 * 336.34551 * 10 9 7 33 33 H 1.08997 * 113.76973 * 107.74168 * 10 9 7 34 34 H 1.08003 * 119.89301 * 0.25329 * 17 16 14 35 35 H 1.08002 * 119.81926 * 180.02562 * 18 17 16 36 36 H 1.07994 * 119.96448 * 179.82884 * 19 18 17 37 37 H 1.07997 * 120.12317 * 179.97438 * 20 19 18 38 38 H 1.09000 * 113.62412 * 203.95977 * 26 25 24 39 39 H 1.08997 * 113.63191 * 334.92081 * 26 25 24 40 40 H 1.08995 * 113.60326 * 270.50153 * 27 26 25 41 41 H 1.09000 * 113.60011 * 139.63897 * 27 26 25 42 42 H 1.09005 * 113.62902 * 25.12505 * 28 25 24 43 43 H 1.09003 * 113.63092 * 156.07191 * 28 25 24 44 44 H 1.09005 * 113.76730 * 221.15024 * 29 11 10 45 45 H 1.08998 * 113.87520 * 89.76402 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 -0.0040 9 6 1.2509 -2.4992 0.0005 10 6 0.7550 -2.9286 1.3932 11 7 1.1910 -4.2896 1.0159 12 6 0.8414 -5.5333 1.4000 13 8 1.3165 -6.4975 0.8384 14 6 -0.1398 -5.7256 2.5276 15 1 -0.7540 -4.8309 2.6291 16 6 0.6138 -5.9631 3.8112 17 6 1.1767 -4.8938 4.4800 18 6 1.8753 -5.0982 5.6559 19 6 2.0174 -6.3741 6.1727 20 6 1.4586 -7.4518 5.5169 21 6 0.7500 -7.2499 4.3316 22 6 0.1402 -8.4027 3.6302 23 8 0.0826 -9.4979 4.1524 24 8 -0.3527 -8.1918 2.3829 25 6 -1.0373 -6.9201 2.2190 26 6 -1.7894 -6.7990 0.8882 27 6 -3.0016 -7.4111 1.6115 28 6 -2.4006 -6.8654 2.9183 29 6 2.1606 -3.7402 0.0485 30 1 -0.4850 0.8402 -0.0004 31 1 0.4839 -2.5469 -0.7725 32 1 1.3257 -2.4965 2.2152 33 1 -0.3227 -2.8319 1.5249 34 1 1.0709 -3.8948 4.0833 35 1 2.3125 -4.2574 6.1739 36 1 2.5667 -6.5265 7.0899 37 1 1.5694 -8.4479 5.9193 38 1 -1.9463 -5.7691 0.5673 39 1 -1.3856 -7.4329 0.0988 40 1 -3.0325 -8.4997 1.5666 41 1 -3.9506 -6.9484 1.3409 42 1 -2.4878 -7.5526 3.7599 43 1 -2.7271 -5.8540 3.1606 44 1 2.2031 -4.2904 -0.8916 45 1 3.1457 -3.5466 0.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898674243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = -25.679585 kcal Electronic energy + Delta-G solvation = -30604.358720 eV Core-core repulsion = 26554.040074 eV Total energy + Delta-G solvation = -4050.318646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69108 -39.41339 -38.98696 -38.29973 -36.91661 -35.70271 -33.19962 -32.71334 -31.37823 -29.58989 -28.36161 -26.06001 -25.41660 -25.21856 -24.46970 -23.91617 -22.20620 -21.33761 -20.36218 -19.18803 -18.32957 -17.65519 -17.01008 -16.93582 -16.50705 -16.30204 -15.88521 -15.47061 -15.05138 -14.92039 -14.72623 -14.62243 -14.36269 -14.14019 -13.78993 -13.01111 -12.92679 -12.86266 -12.63109 -12.48961 -12.31724 -12.14393 -11.96209 -11.70281 -11.63382 -11.36026 -11.24511 -11.07936 -11.05679 -10.91017 -10.81854 -10.51092 -10.35970 -9.93514 -9.82774 -9.41233 -9.27438 -9.22615 -8.78447 -8.65149 -7.97392 -6.27266 -4.32990 0.46812 1.06991 2.19066 2.88675 3.02728 3.18838 3.24940 3.26020 3.32964 3.57224 4.02030 4.09192 4.19317 4.25408 4.29871 4.52157 4.65333 4.67022 4.81316 4.91211 5.03513 5.05067 5.07978 5.20507 5.30584 5.46587 5.50495 5.54251 5.69820 5.73044 5.84500 5.93365 5.94612 6.00992 6.07443 6.08722 6.14150 6.17807 6.20283 6.30115 6.41240 6.49966 6.61495 6.68201 6.98745 7.37164 7.45098 7.70220 8.06398 8.35505 8.59891 8.70272 9.34485 10.82218 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003652 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.746697 B = 7664.765337 C = 8715.570298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.101 3.899 11 N -0.637 5.637 12 C 0.536 3.464 13 O -0.540 6.540 14 C -0.086 4.086 15 H 0.122 0.878 16 C -0.023 4.023 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.165 4.165 22 C 0.532 3.468 23 O -0.459 6.459 24 O -0.313 6.313 25 C 0.116 3.884 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.157 4.157 29 C 0.104 3.896 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -8.170 10.370 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.021 4.021 11 N -0.371 5.371 12 C 0.323 3.677 13 O -0.418 6.418 14 C -0.108 4.108 15 H 0.140 0.860 16 C -0.024 4.024 17 C -0.136 4.136 18 C -0.098 4.098 19 C -0.150 4.150 20 C -0.073 4.073 21 C -0.166 4.166 22 C 0.374 3.626 23 O -0.343 6.343 24 O -0.231 6.231 25 C 0.079 3.921 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.195 4.195 29 C -0.017 4.017 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.620 -9.404 10.197 14.336 hybrid contribution 0.630 1.184 0.262 1.367 sum -2.991 -8.219 10.459 13.634 Atomic orbital electron populations 1.69926 1.06029 1.27300 1.49047 1.24997 0.94855 0.99313 0.94208 0.86616 0.79639 0.82688 0.78879 1.20035 1.21199 1.20086 1.20929 0.93045 0.89651 1.52312 0.91917 1.20471 0.94131 0.91382 0.92320 1.23818 0.99250 0.76528 1.02465 1.50553 1.40311 1.04494 1.41750 1.19540 0.82523 0.82470 0.83173 1.90700 1.56018 1.39249 1.55876 1.20787 0.97043 1.00384 0.92558 0.85982 1.19537 0.96565 0.92718 0.93575 1.21189 0.97884 0.99066 0.95494 1.21424 0.95896 0.97493 0.94985 1.21201 1.00695 0.92384 1.00672 1.21270 0.93637 1.00055 0.92363 1.20039 1.04843 0.93248 0.98517 1.20904 0.74996 0.87612 0.79049 1.90776 1.54131 1.27197 1.62194 1.87010 1.68857 1.37887 1.29324 1.22785 0.89232 0.79767 1.00365 1.23025 0.94245 1.03225 0.95234 1.22853 0.97976 1.01380 0.94861 1.23594 0.94015 1.03348 0.98501 1.23501 0.93782 0.93673 0.90764 0.92540 0.91739 0.90640 0.91681 0.84486 0.84877 0.84926 0.84446 0.87633 0.89147 0.89395 0.90273 0.90534 0.87754 0.91935 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.59 13.29 55.43 0.74 -21.86 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.52 -12.45 8.77 -34.44 -0.30 -12.75 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 0.78 3.60 -90.85 -0.33 0.45 16 10 C 0.10 1.89 7.75 -2.84 -0.02 1.87 16 11 N -0.64 -11.85 3.61 -178.25 -0.64 -12.50 16 12 C 0.54 9.90 6.37 -10.98 -0.07 9.83 16 13 O -0.54 -11.87 16.68 -3.07 -0.05 -11.92 16 14 C -0.09 -1.28 1.95 -93.13 -0.18 -1.46 16 15 H 0.12 1.56 7.20 -51.93 -0.37 1.19 16 16 C -0.02 -0.33 5.06 -104.19 -0.53 -0.86 16 17 C -0.12 -1.49 9.67 -39.60 -0.38 -1.87 16 18 C -0.08 -0.84 10.03 -39.50 -0.40 -1.24 16 19 C -0.13 -1.34 10.04 -39.62 -0.40 -1.74 16 20 C -0.06 -0.68 9.61 -39.18 -0.38 -1.06 16 21 C -0.16 -2.45 5.84 -104.91 -0.61 -3.06 16 22 C 0.53 8.98 7.37 34.77 0.26 9.23 16 23 O -0.46 -8.34 17.34 -19.10 -0.33 -8.67 16 24 O -0.31 -5.42 9.81 -47.54 -0.47 -5.89 16 25 C 0.12 1.66 0.34 -90.50 -0.03 1.63 16 26 C -0.12 -1.56 6.75 -26.11 -0.18 -1.73 16 27 C -0.13 -1.40 8.03 -25.84 -0.21 -1.61 16 28 C -0.16 -1.73 7.26 -26.12 -0.19 -1.92 16 29 C 0.10 2.04 8.40 -2.97 -0.02 2.01 16 30 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 33 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 34 H 0.14 1.65 7.75 -52.48 -0.41 1.24 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.14 1.55 7.73 -52.49 -0.41 1.14 16 38 H 0.11 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 43 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -29.97 377.33 -10.33 -40.30 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.17 Total: 3.43 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.07 Total: -2.66 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.09 Total: -34.36 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.85 Total: -26.48 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.97 -10.33 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.624 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds