Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47090 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46633 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46847 * 119.99898 * 3 2 1 7 7 C 1.37885 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00128 * 179.72147 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.74457 * 278.74235 * 9 7 2 11 11 N 1.47810 * 86.03389 * 222.08197 * 10 9 7 12 12 C 1.34780 * 134.45443 * 204.63866 * 11 10 9 13 13 O 1.21281 * 120.00109 * 174.82697 * 12 11 10 14 14 C 1.50700 * 119.99699 * 354.82041 * 12 11 10 15 15 H 1.08998 * 109.37253 * 23.25671 * 14 12 11 16 16 C 1.50734 * 109.37469 * 263.49363 * 14 12 11 17 17 C 1.38118 * 119.61147 * 78.33684 * 16 14 12 18 18 C 1.38299 * 120.20896 * 180.25865 * 17 16 14 19 19 C 1.38396 * 120.37258 * 0.02625 * 18 17 16 20 20 C 1.37972 * 120.07234 * 359.85963 * 19 18 17 21 21 C 1.39468 * 120.79329 * 258.35593 * 16 14 12 22 22 C 1.48077 * 120.08652 * 359.41322 * 21 16 14 23 23 O 1.21474 * 121.18670 * 190.40462 * 22 21 16 24 24 O 1.35765 * 117.63054 * 10.37831 * 22 21 16 25 25 C 1.45354 * 114.23230 * 320.58013 * 24 22 21 26 26 C 1.53343 * 113.45118 * 189.81089 * 25 24 22 27 27 C 1.53858 * 86.96358 * 89.44032 * 26 25 24 28 28 C 1.53320 * 113.49295 * 287.70382 * 25 24 22 29 29 C 1.47576 * 91.05270 * 24.54857 * 11 10 9 30 30 H 0.97009 * 119.99489 * 0.02562 * 1 2 3 31 31 H 1.09005 * 112.93987 * 50.33114 * 9 7 2 32 32 H 1.08999 * 113.76259 * 336.34551 * 10 9 7 33 33 H 1.08997 * 113.76973 * 107.74168 * 10 9 7 34 34 H 1.08003 * 119.89301 * 0.25329 * 17 16 14 35 35 H 1.08002 * 119.81926 * 180.02562 * 18 17 16 36 36 H 1.07994 * 119.96448 * 179.82884 * 19 18 17 37 37 H 1.07997 * 120.12317 * 179.97438 * 20 19 18 38 38 H 1.09000 * 113.62412 * 203.95977 * 26 25 24 39 39 H 1.08997 * 113.63191 * 334.92081 * 26 25 24 40 40 H 1.08995 * 113.60326 * 270.50153 * 27 26 25 41 41 H 1.09000 * 113.60011 * 139.63897 * 27 26 25 42 42 H 1.09005 * 113.62902 * 25.12505 * 28 25 24 43 43 H 1.09003 * 113.63092 * 156.07191 * 28 25 24 44 44 H 1.09005 * 113.76730 * 221.15024 * 29 11 10 45 45 H 1.08998 * 113.87520 * 89.76402 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 -0.0040 9 6 1.2509 -2.4992 0.0005 10 6 0.7550 -2.9286 1.3932 11 7 1.1910 -4.2896 1.0159 12 6 0.8414 -5.5333 1.4000 13 8 1.3165 -6.4975 0.8384 14 6 -0.1398 -5.7256 2.5276 15 1 -0.7540 -4.8309 2.6291 16 6 0.6138 -5.9631 3.8112 17 6 1.1767 -4.8938 4.4800 18 6 1.8753 -5.0982 5.6559 19 6 2.0174 -6.3741 6.1727 20 6 1.4586 -7.4518 5.5169 21 6 0.7500 -7.2499 4.3316 22 6 0.1402 -8.4027 3.6302 23 8 0.0826 -9.4979 4.1524 24 8 -0.3527 -8.1918 2.3829 25 6 -1.0373 -6.9201 2.2190 26 6 -1.7894 -6.7990 0.8882 27 6 -3.0016 -7.4111 1.6115 28 6 -2.4006 -6.8654 2.9183 29 6 2.1606 -3.7402 0.0485 30 1 -0.4850 0.8402 -0.0004 31 1 0.4839 -2.5469 -0.7725 32 1 1.3257 -2.4965 2.2152 33 1 -0.3227 -2.8319 1.5249 34 1 1.0709 -3.8948 4.0833 35 1 2.3125 -4.2574 6.1739 36 1 2.5667 -6.5265 7.0899 37 1 1.5694 -8.4479 5.9193 38 1 -1.9463 -5.7691 0.5673 39 1 -1.3856 -7.4329 0.0988 40 1 -3.0325 -8.4997 1.5666 41 1 -3.9506 -6.9484 1.3409 42 1 -2.4878 -7.5526 3.7599 43 1 -2.7271 -5.8540 3.1606 44 1 2.2031 -4.2904 -0.8916 45 1 3.1457 -3.5466 0.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898674243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -40.222898 kcal Electronic energy + Delta-G solvation = -30604.989365 eV Core-core repulsion = 26554.040074 eV Total energy + Delta-G solvation = -4050.949291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.82857 -40.88325 -40.00479 -39.51085 -38.46118 -36.87132 -34.63774 -34.18922 -32.34807 -31.03147 -29.59250 -27.08963 -26.94766 -26.85621 -25.50901 -25.02373 -23.27865 -22.52936 -21.76436 -20.32557 -19.71644 -18.79093 -18.65542 -18.10572 -18.02840 -17.39869 -17.07318 -16.68867 -16.53364 -16.20858 -16.03874 -15.80819 -15.52008 -15.22623 -15.01737 -14.37226 -14.25575 -14.00251 -13.90049 -13.64274 -13.56255 -13.35683 -13.21792 -13.08099 -12.94690 -12.75289 -12.65886 -12.58176 -12.26303 -12.19765 -11.95632 -11.91080 -11.56703 -11.31724 -11.11738 -11.02546 -10.78785 -10.51580 -10.18677 -9.88113 -9.54360 -8.12985 -6.23072 -0.57361 0.13804 1.07275 1.50661 1.51207 1.53655 1.59139 1.81490 1.94770 2.48887 2.56794 2.93484 3.01492 3.17625 3.18898 3.21186 3.52965 3.61198 3.69967 3.75933 4.00470 4.08797 4.18367 4.27882 4.30882 4.36863 4.46036 4.56017 4.57338 4.58456 4.62538 4.68859 4.79265 4.83470 4.85958 4.92745 4.97313 4.97452 5.05545 5.13141 5.18838 5.26631 5.32469 5.64587 5.74567 5.83968 5.85494 6.14116 6.26194 6.83105 6.85530 7.10424 7.46756 8.96105 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003652 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.746697 B = 7664.765337 C = 8715.570298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.025 3.975 10 C 0.120 3.880 11 N -0.635 5.635 12 C 0.536 3.464 13 O -0.582 6.582 14 C -0.079 4.079 15 H 0.144 0.856 16 C -0.039 4.039 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.119 4.119 20 C -0.062 4.062 21 C -0.187 4.187 22 C 0.527 3.473 23 O -0.488 6.488 24 O -0.340 6.340 25 C 0.099 3.901 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.144 4.144 29 C 0.106 3.894 30 H 0.265 0.735 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.131 0.869 44 H 0.057 0.943 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -6.582 12.796 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.006 3.994 10 C -0.002 4.002 11 N -0.368 5.368 12 C 0.325 3.675 13 O -0.462 6.462 14 C -0.100 4.100 15 H 0.161 0.839 16 C -0.040 4.040 17 C -0.144 4.144 18 C -0.088 4.088 19 C -0.136 4.136 20 C -0.080 4.080 21 C -0.189 4.189 22 C 0.372 3.628 23 O -0.374 6.374 24 O -0.259 6.259 25 C 0.061 3.939 26 C -0.164 4.164 27 C -0.158 4.158 28 C -0.181 4.181 29 C -0.016 4.016 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.149 0.851 44 H 0.075 0.925 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.447 -7.801 12.626 15.237 hybrid contribution 0.657 0.676 -0.534 1.083 sum -2.791 -7.124 12.092 14.310 Atomic orbital electron populations 1.70014 1.07094 1.27818 1.50165 1.25609 0.95482 1.01957 0.94131 0.85736 0.78455 0.79332 0.78873 1.20271 1.21351 1.19212 1.21202 0.93231 0.90656 1.51830 0.91955 1.20380 0.94048 0.91502 0.93485 1.23597 0.99865 0.75955 1.00744 1.50506 1.39991 1.04821 1.41464 1.20170 0.82446 0.81465 0.83412 1.90678 1.57689 1.40387 1.57477 1.20782 0.96366 1.01481 0.91324 0.83889 1.19542 0.97752 0.93125 0.93615 1.21384 0.98048 0.98691 0.96285 1.21862 0.94249 0.98737 0.93910 1.21623 0.99327 0.91403 1.01261 1.21513 0.93385 1.01352 0.91755 1.20038 1.06482 0.92593 0.99768 1.21303 0.74572 0.88029 0.78875 1.90734 1.55438 1.28315 1.62960 1.86951 1.69357 1.39656 1.29894 1.23202 0.90198 0.78553 1.01903 1.23103 0.95507 1.03428 0.94363 1.22810 0.98119 1.01058 0.93821 1.23614 0.91345 1.04818 0.98307 1.23401 0.94111 0.92878 0.91166 0.92643 0.94483 0.89542 0.90751 0.83908 0.81475 0.81199 0.83927 0.86873 0.91506 0.90096 0.87512 0.90771 0.85132 0.92469 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.15 13.29 21.45 0.28 -45.86 16 2 C 0.03 1.40 5.46 84.66 0.46 1.86 16 3 Si 0.95 38.40 29.54 68.60 2.03 40.43 16 4 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.53 -25.07 8.77 25.60 0.22 -24.85 16 8 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 9 C 0.03 1.08 3.60 -10.88 -0.04 1.04 16 10 C 0.12 4.33 7.75 86.44 0.67 5.00 16 11 N -0.63 -23.35 3.61 -836.23 -3.02 -26.37 16 12 C 0.54 19.84 6.37 87.66 0.56 20.40 16 13 O -0.58 -26.32 16.68 5.22 0.09 -26.23 16 14 C -0.08 -2.27 1.95 -12.42 -0.02 -2.29 16 15 H 0.14 3.39 7.20 -2.39 -0.02 3.37 16 16 C -0.04 -1.09 5.06 -19.59 -0.10 -1.19 16 17 C -0.13 -2.83 9.67 22.26 0.22 -2.62 16 18 C -0.07 -1.19 10.03 22.32 0.22 -0.96 16 19 C -0.12 -1.98 10.04 22.24 0.22 -1.75 16 20 C -0.06 -1.44 9.61 22.53 0.22 -1.22 16 21 C -0.19 -5.48 5.84 -20.05 -0.12 -5.59 16 22 C 0.53 18.32 7.37 70.43 0.52 18.83 16 23 O -0.49 -18.40 17.34 19.78 0.34 -18.06 16 24 O -0.34 -12.25 9.81 -63.64 -0.62 -12.88 16 25 C 0.10 2.81 0.34 -10.72 0.00 2.81 16 26 C -0.13 -3.31 6.75 31.00 0.21 -3.10 16 27 C -0.12 -2.41 8.03 31.17 0.25 -2.16 16 28 C -0.14 -2.96 7.26 30.99 0.23 -2.74 16 29 C 0.11 4.17 8.40 86.48 0.73 4.90 16 30 H 0.26 12.86 8.31 -92.70 -0.77 12.09 16 31 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 32 H 0.09 2.96 7.89 -2.39 -0.02 2.94 16 33 H 0.07 2.55 7.95 -2.39 -0.02 2.53 16 34 H 0.14 3.00 7.75 -2.91 -0.02 2.98 16 35 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.14 3.07 7.73 -2.91 -0.02 3.05 16 38 H 0.11 2.72 8.10 -2.39 -0.02 2.70 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.59 7.86 -2.38 -0.02 1.57 16 43 H 0.13 1.99 7.92 -2.39 -0.02 1.97 16 44 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.08 3.10 8.09 -2.39 -0.02 3.08 16 Total: -1.00 -66.59 377.33 4.54 -62.05 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.01 Total: 20.55 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.44 Total: 6.37 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.74 Total: -72.23 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -0.19 Total: -57.17 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -66.59 4.54 -62.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.824 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds