Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47189 * 300.00098 * 3 2 1 6 6 H 1.48497 * 109.46901 * 59.99669 * 3 2 1 7 7 C 1.37884 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53504 * 114.20368 * 180.02562 * 9 7 2 11 11 N 1.47072 * 87.98364 * 220.34498 * 10 9 7 12 12 C 1.34772 * 136.05522 * 207.08767 * 11 10 9 13 13 O 1.21274 * 120.00091 * 5.04553 * 12 11 10 14 14 C 1.50703 * 119.99544 * 185.04587 * 12 11 10 15 15 H 1.08991 * 109.38030 * 336.17303 * 14 12 11 16 16 C 1.50743 * 109.37555 * 95.93965 * 14 12 11 17 17 C 1.38290 * 119.49326 * 281.77726 * 16 14 12 18 18 C 1.38303 * 120.14435 * 179.58744 * 17 16 14 19 19 C 1.38393 * 120.39966 * 359.92129 * 18 17 16 20 20 C 1.37968 * 120.05279 * 0.10239 * 19 18 17 21 21 C 1.39320 * 120.89811 * 101.41592 * 16 14 12 22 22 C 1.48082 * 120.05159 * 0.69398 * 21 16 14 23 23 O 1.21470 * 121.18657 * 169.59572 * 22 21 16 24 24 O 1.35781 * 117.62692 * 349.62651 * 22 21 16 25 25 C 1.45352 * 114.21341 * 39.38728 * 24 22 21 26 26 C 1.53323 * 113.47998 * 72.21255 * 25 24 22 27 27 C 1.53854 * 86.97107 * 89.40395 * 26 25 24 28 28 C 1.53338 * 113.45331 * 170.10488 * 25 24 22 29 29 C 1.47068 * 87.88633 * 27.33779 * 11 10 9 30 30 H 0.96996 * 120.00231 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28159 * 313.06249 * 9 7 2 32 32 H 1.08997 * 113.47077 * 105.56410 * 10 9 7 33 33 H 1.08994 * 113.51740 * 335.12546 * 10 9 7 34 34 H 1.07998 * 119.94545 * 359.51151 * 17 16 14 35 35 H 1.08005 * 119.80274 * 179.89533 * 18 17 16 36 36 H 1.08000 * 119.97165 * 180.13192 * 19 18 17 37 37 H 1.07998 * 120.11228 * 180.02562 * 20 19 18 38 38 H 1.09004 * 113.63344 * 203.92415 * 26 25 24 39 39 H 1.09001 * 113.63016 * 334.87877 * 26 25 24 40 40 H 1.09000 * 113.59797 * 270.50039 * 27 26 25 41 41 H 1.09005 * 113.67724 * 139.65308 * 27 26 25 42 42 H 1.09006 * 113.63400 * 25.08520 * 28 25 24 43 43 H 1.08996 * 113.63692 * 156.05421 * 28 25 24 44 44 H 1.08998 * 113.46655 * 87.43818 * 29 11 10 45 45 H 1.08997 * 113.47309 * 217.88049 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.1487 -3.7443 -0.0016 11 7 1.2106 -4.3571 -0.9541 12 6 0.8363 -5.6108 -1.2771 13 8 1.2612 -6.5530 -0.6427 14 6 -0.1103 -5.8419 -2.4268 15 1 -0.6996 -4.9409 -2.5968 16 6 0.6808 -6.1637 -3.6690 17 6 1.2926 -5.1410 -4.3706 18 6 2.0287 -5.4220 -5.5072 19 6 2.1611 -6.7261 -5.9512 20 6 1.5555 -7.7558 -5.2610 21 6 0.8096 -7.4774 -4.1148 22 6 0.1525 -8.5792 -3.3753 23 8 0.0913 -9.6999 -3.8399 24 8 -0.3797 -8.2921 -2.1596 25 6 -1.0432 -7.0008 -2.0892 26 6 -2.3785 -6.9583 -2.8416 27 6 -3.0382 -7.4216 -1.5312 28 6 -1.8410 -6.7942 -0.7961 29 6 0.8653 -2.9999 -1.4033 30 1 -0.4850 0.8400 -0.0004 31 1 0.4432 -2.5309 0.7295 32 1 2.1843 -4.2537 0.9614 33 1 3.1389 -3.5665 -0.4211 34 1 1.1945 -4.1205 -4.0311 35 1 2.5029 -4.6188 -6.0518 36 1 2.7393 -6.9378 -6.8385 37 1 1.6585 -8.7739 -5.6065 38 1 -2.6749 -5.9555 -3.1493 39 1 -2.4489 -7.6880 -3.6482 40 1 -3.0933 -8.5055 -1.4299 41 1 -3.9871 -6.9282 -1.3205 42 1 -1.4798 -7.3923 0.0405 43 1 -1.9884 -5.7460 -0.5363 44 1 1.5168 -2.6250 -2.1926 45 1 -0.1926 -2.8751 -1.6346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898674244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = -21.937933 kcal Electronic energy + Delta-G solvation = -30569.408170 eV Core-core repulsion = 26519.251774 eV Total energy + Delta-G solvation = -4050.156396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70726 -39.49915 -39.00782 -38.34675 -37.02104 -35.70964 -33.21612 -32.74169 -31.39301 -29.63941 -28.40448 -26.06401 -25.39466 -25.11852 -24.47661 -23.92968 -22.23429 -21.36342 -20.46587 -19.20771 -18.35082 -17.66532 -17.03892 -16.94750 -16.49702 -16.30701 -15.88929 -15.47983 -15.06538 -14.92862 -14.73990 -14.63111 -14.36549 -14.15425 -13.82034 -13.04996 -12.93913 -12.86248 -12.63567 -12.49970 -12.37110 -12.17551 -11.97255 -11.68847 -11.62221 -11.41033 -11.27002 -11.08181 -11.05647 -10.90341 -10.82856 -10.44407 -10.36956 -9.94209 -9.83305 -9.36863 -9.27380 -9.23760 -8.80583 -8.66969 -7.99862 -6.28258 -4.33857 0.45812 1.05130 2.18011 2.86752 3.01328 3.15964 3.25339 3.27459 3.32345 3.56003 4.00782 4.08469 4.18961 4.24686 4.28898 4.51371 4.64482 4.66229 4.80049 4.90640 5.01283 5.04525 5.06897 5.19224 5.29350 5.46022 5.50233 5.52920 5.69200 5.72122 5.83671 5.90705 5.93247 5.99874 6.04451 6.07090 6.12499 6.15896 6.18792 6.34036 6.39220 6.50223 6.59957 6.66317 6.97746 7.36161 7.44996 7.69696 8.07185 8.35488 8.58610 8.70884 9.33761 10.81399 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003604 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.743985 B = 7767.844847 C = 8821.627568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.100 3.900 11 N -0.641 5.641 12 C 0.543 3.457 13 O -0.539 6.539 14 C -0.085 4.085 15 H 0.123 0.877 16 C -0.024 4.024 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.131 4.131 20 C -0.055 4.055 21 C -0.164 4.164 22 C 0.532 3.468 23 O -0.459 6.459 24 O -0.313 6.313 25 C 0.116 3.884 26 C -0.157 4.157 27 C -0.133 4.133 28 C -0.120 4.120 29 C 0.094 3.906 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -8.646 -10.514 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.018 3.982 10 C -0.021 4.021 11 N -0.374 5.374 12 C 0.330 3.670 13 O -0.417 6.417 14 C -0.107 4.107 15 H 0.141 0.859 16 C -0.025 4.025 17 C -0.136 4.136 18 C -0.098 4.098 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.166 4.166 22 C 0.374 3.626 23 O -0.342 6.342 24 O -0.230 6.230 25 C 0.078 3.922 26 C -0.194 4.194 27 C -0.171 4.171 28 C -0.157 4.157 29 C -0.028 4.028 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.241 -9.901 -10.263 14.624 hybrid contribution 0.631 1.166 -0.286 1.356 sum -2.610 -8.735 -10.549 13.943 Atomic orbital electron populations 1.69942 1.06066 1.27125 1.49053 1.25012 0.94851 0.99393 0.94126 0.86497 0.80244 0.83300 0.77783 1.19541 1.20875 1.20820 1.20944 0.93082 0.89482 1.52084 0.91764 1.20381 0.94807 0.91145 0.91881 1.23369 0.94235 0.93073 0.91449 1.50043 1.42717 1.04505 1.40165 1.19364 0.82043 0.81664 0.83902 1.90704 1.57028 1.40931 1.53008 1.20780 0.96716 1.00418 0.92746 0.85931 1.19552 0.96512 0.92629 0.93796 1.21233 0.97501 0.99447 0.95446 1.21425 0.96028 0.97040 0.95347 1.21203 1.00538 0.92552 1.00610 1.21267 0.93485 1.00334 0.92256 1.20001 1.04306 0.93225 0.99043 1.20910 0.75457 0.87529 0.78697 1.90775 1.55694 1.24251 1.63528 1.87019 1.68632 1.36618 1.30778 1.22784 0.89366 0.79449 1.00564 1.23592 0.94092 1.03525 0.98222 1.22854 0.97895 1.01578 0.94745 1.23027 0.93848 1.03003 0.95856 1.23740 0.99651 0.76863 1.02532 0.92625 0.91169 0.92305 0.90821 0.84496 0.84881 0.84905 0.84431 0.87753 0.90525 0.89395 0.90260 0.89124 0.87614 0.90729 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.67 13.26 55.43 0.74 -21.94 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.09 29.54 -169.99 -5.02 14.06 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -12.36 8.82 -34.44 -0.30 -12.67 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 0.80 3.80 -91.12 -0.35 0.46 16 10 C 0.10 1.97 8.18 -8.49 -0.07 1.90 16 11 N -0.64 -11.92 3.69 -185.02 -0.68 -12.60 16 12 C 0.54 10.03 6.40 -10.99 -0.07 9.96 16 13 O -0.54 -11.84 16.69 -3.45 -0.06 -11.89 16 14 C -0.09 -1.26 1.97 -93.13 -0.18 -1.44 16 15 H 0.12 1.56 7.32 -51.93 -0.38 1.18 16 16 C -0.02 -0.34 5.06 -104.18 -0.53 -0.87 16 17 C -0.12 -1.47 9.67 -39.54 -0.38 -1.85 16 18 C -0.08 -0.83 10.03 -39.50 -0.40 -1.23 16 19 C -0.13 -1.32 10.04 -39.62 -0.40 -1.72 16 20 C -0.06 -0.68 9.61 -39.19 -0.38 -1.06 16 21 C -0.16 -2.42 5.83 -104.96 -0.61 -3.04 16 22 C 0.53 8.93 7.36 34.77 0.26 9.19 16 23 O -0.46 -8.30 17.34 -19.10 -0.33 -8.63 16 24 O -0.31 -5.40 9.80 -47.67 -0.47 -5.87 16 25 C 0.12 1.66 0.33 -90.50 -0.03 1.63 16 26 C -0.16 -1.72 7.26 -26.12 -0.19 -1.91 16 27 C -0.13 -1.40 8.03 -25.84 -0.21 -1.61 16 28 C -0.12 -1.56 6.75 -26.11 -0.18 -1.74 16 29 C 0.09 1.76 7.62 -8.36 -0.06 1.69 16 30 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.07 1.67 8.11 -51.93 -0.42 1.25 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.40 8.10 -51.93 -0.42 0.97 16 34 H 0.14 1.62 7.92 -52.49 -0.42 1.21 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 1.54 7.73 -52.49 -0.41 1.13 16 38 H 0.10 0.95 7.93 -51.93 -0.41 0.53 16 39 H 0.08 0.85 7.86 -51.93 -0.41 0.45 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.11 1.30 8.10 -51.93 -0.42 0.88 16 44 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 45 H 0.06 1.09 7.96 -51.93 -0.41 0.67 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -30.05 377.76 -10.50 -40.56 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.20 Total: 3.31 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -4.17 Total: -2.69 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.05 Total: -34.54 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.86 Total: -26.39 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.05 -10.50 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.619 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds