Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47189 * 300.00098 * 3 2 1 6 6 H 1.48497 * 109.46901 * 59.99669 * 3 2 1 7 7 C 1.37884 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53504 * 114.20368 * 180.02562 * 9 7 2 11 11 N 1.47072 * 87.98364 * 220.34498 * 10 9 7 12 12 C 1.34772 * 136.05522 * 207.08767 * 11 10 9 13 13 O 1.21274 * 120.00091 * 5.04553 * 12 11 10 14 14 C 1.50703 * 119.99544 * 185.04587 * 12 11 10 15 15 H 1.08991 * 109.38030 * 336.17303 * 14 12 11 16 16 C 1.50743 * 109.37555 * 95.93965 * 14 12 11 17 17 C 1.38290 * 119.49326 * 281.77726 * 16 14 12 18 18 C 1.38303 * 120.14435 * 179.58744 * 17 16 14 19 19 C 1.38393 * 120.39966 * 359.92129 * 18 17 16 20 20 C 1.37968 * 120.05279 * 0.10239 * 19 18 17 21 21 C 1.39320 * 120.89811 * 101.41592 * 16 14 12 22 22 C 1.48082 * 120.05159 * 0.69398 * 21 16 14 23 23 O 1.21470 * 121.18657 * 169.59572 * 22 21 16 24 24 O 1.35781 * 117.62692 * 349.62651 * 22 21 16 25 25 C 1.45352 * 114.21341 * 39.38728 * 24 22 21 26 26 C 1.53323 * 113.47998 * 72.21255 * 25 24 22 27 27 C 1.53854 * 86.97107 * 89.40395 * 26 25 24 28 28 C 1.53338 * 113.45331 * 170.10488 * 25 24 22 29 29 C 1.47068 * 87.88633 * 27.33779 * 11 10 9 30 30 H 0.96996 * 120.00231 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28159 * 313.06249 * 9 7 2 32 32 H 1.08997 * 113.47077 * 105.56410 * 10 9 7 33 33 H 1.08994 * 113.51740 * 335.12546 * 10 9 7 34 34 H 1.07998 * 119.94545 * 359.51151 * 17 16 14 35 35 H 1.08005 * 119.80274 * 179.89533 * 18 17 16 36 36 H 1.08000 * 119.97165 * 180.13192 * 19 18 17 37 37 H 1.07998 * 120.11228 * 180.02562 * 20 19 18 38 38 H 1.09004 * 113.63344 * 203.92415 * 26 25 24 39 39 H 1.09001 * 113.63016 * 334.87877 * 26 25 24 40 40 H 1.09000 * 113.59797 * 270.50039 * 27 26 25 41 41 H 1.09005 * 113.67724 * 139.65308 * 27 26 25 42 42 H 1.09006 * 113.63400 * 25.08520 * 28 25 24 43 43 H 1.08996 * 113.63692 * 156.05421 * 28 25 24 44 44 H 1.08998 * 113.46655 * 87.43818 * 29 11 10 45 45 H 1.08997 * 113.47309 * 217.88049 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.1487 -3.7443 -0.0016 11 7 1.2106 -4.3571 -0.9541 12 6 0.8363 -5.6108 -1.2771 13 8 1.2612 -6.5530 -0.6427 14 6 -0.1103 -5.8419 -2.4268 15 1 -0.6996 -4.9409 -2.5968 16 6 0.6808 -6.1637 -3.6690 17 6 1.2926 -5.1410 -4.3706 18 6 2.0287 -5.4220 -5.5072 19 6 2.1611 -6.7261 -5.9512 20 6 1.5555 -7.7558 -5.2610 21 6 0.8096 -7.4774 -4.1148 22 6 0.1525 -8.5792 -3.3753 23 8 0.0913 -9.6999 -3.8399 24 8 -0.3797 -8.2921 -2.1596 25 6 -1.0432 -7.0008 -2.0892 26 6 -2.3785 -6.9583 -2.8416 27 6 -3.0382 -7.4216 -1.5312 28 6 -1.8410 -6.7942 -0.7961 29 6 0.8653 -2.9999 -1.4033 30 1 -0.4850 0.8400 -0.0004 31 1 0.4432 -2.5309 0.7295 32 1 2.1843 -4.2537 0.9614 33 1 3.1389 -3.5665 -0.4211 34 1 1.1945 -4.1205 -4.0311 35 1 2.5029 -4.6188 -6.0518 36 1 2.7393 -6.9378 -6.8385 37 1 1.6585 -8.7739 -5.6065 38 1 -2.6749 -5.9555 -3.1493 39 1 -2.4489 -7.6880 -3.6482 40 1 -3.0933 -8.5055 -1.4299 41 1 -3.9871 -6.9282 -1.3205 42 1 -1.4798 -7.3923 0.0405 43 1 -1.9884 -5.7460 -0.5363 44 1 1.5168 -2.6250 -2.1926 45 1 -0.1926 -2.8751 -1.6346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898674244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = -36.651046 kcal Electronic energy + Delta-G solvation = -30570.046178 eV Core-core repulsion = 26519.251774 eV Total energy + Delta-G solvation = -4050.794404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.84236 -40.98289 -40.02312 -39.54648 -38.55172 -36.87460 -34.66365 -34.20444 -32.35326 -31.08919 -29.61821 -27.11521 -26.97317 -26.68768 -25.50826 -25.03564 -23.30862 -22.57824 -21.83887 -20.33534 -19.73477 -18.80006 -18.68180 -18.10928 -18.01643 -17.39938 -17.07260 -16.69658 -16.54425 -16.21282 -16.05309 -15.81382 -15.52679 -15.23246 -15.04608 -14.39920 -14.25348 -14.06814 -13.90988 -13.64763 -13.56552 -13.34150 -13.19720 -13.15344 -12.95204 -12.75593 -12.66109 -12.57274 -12.25561 -12.16464 -11.95874 -11.91584 -11.57288 -11.31262 -11.05850 -11.01452 -10.82937 -10.51738 -10.19055 -9.89138 -9.57030 -8.14019 -6.23975 -0.57476 0.13012 1.06917 1.47901 1.49352 1.53565 1.62180 1.80575 1.94373 2.48515 2.56578 2.92911 3.01280 3.16598 3.18337 3.19883 3.52772 3.61015 3.69700 3.75330 4.00100 4.08123 4.17980 4.26109 4.28270 4.36152 4.41777 4.54502 4.56408 4.57949 4.62126 4.72723 4.78934 4.82549 4.85474 4.91699 4.96990 4.97241 5.04518 5.11761 5.18393 5.26231 5.32170 5.63861 5.74307 5.83461 5.85040 6.13739 6.26264 6.84086 6.85998 7.08715 7.46060 8.95795 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003604 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.743985 B = 7767.844847 C = 8821.627568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.025 3.975 10 C 0.103 3.897 11 N -0.638 5.638 12 C 0.542 3.458 13 O -0.580 6.580 14 C -0.077 4.077 15 H 0.144 0.856 16 C -0.040 4.040 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.062 4.062 21 C -0.186 4.186 22 C 0.527 3.473 23 O -0.488 6.488 24 O -0.340 6.340 25 C 0.099 3.901 26 C -0.143 4.143 27 C -0.121 4.121 28 C -0.127 4.127 29 C 0.113 3.887 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -7.148 -13.091 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.214 1.214 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.005 3.995 10 C -0.019 4.019 11 N -0.371 5.371 12 C 0.332 3.668 13 O -0.461 6.461 14 C -0.098 4.098 15 H 0.162 0.838 16 C -0.041 4.041 17 C -0.144 4.144 18 C -0.088 4.088 19 C -0.136 4.136 20 C -0.080 4.080 21 C -0.188 4.188 22 C 0.372 3.628 23 O -0.374 6.374 24 O -0.258 6.258 25 C 0.061 3.939 26 C -0.180 4.180 27 C -0.158 4.158 28 C -0.164 4.164 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.887 -8.388 -12.845 15.611 hybrid contribution 0.601 0.678 0.560 1.065 sum -2.287 -7.710 -12.285 14.683 Atomic orbital electron populations 1.70030 1.07195 1.27734 1.50279 1.25639 0.95477 1.02102 0.94075 0.85598 0.79257 0.79865 0.77473 1.19082 1.20408 1.21352 1.21201 0.93240 0.90444 1.51532 0.91785 1.20258 0.94528 0.91322 0.93346 1.23268 0.94634 0.92271 0.91748 1.50014 1.42413 1.04847 1.39847 1.20029 0.81856 0.80684 0.84222 1.90683 1.58674 1.42058 1.54678 1.20777 0.96139 1.01491 0.91414 0.83827 1.19552 0.97668 0.92962 0.93943 1.21433 0.97630 0.99196 0.96115 1.21866 0.94468 0.98155 0.94280 1.21628 0.99261 0.91714 1.00961 1.21508 0.93262 1.01546 0.91728 1.19997 1.05857 0.92695 1.00257 1.21315 0.75088 0.87877 0.78536 1.90733 1.56957 1.25376 1.64341 1.86960 1.69122 1.38348 1.31419 1.23197 0.90273 0.78229 1.02154 1.23610 0.91458 1.04966 0.98000 1.22812 0.98067 1.01281 0.93659 1.23103 0.95160 1.03236 0.94939 1.23497 1.00457 0.76163 1.00739 0.92643 0.94031 0.93078 0.89834 0.83844 0.81436 0.81182 0.83933 0.85125 0.90733 0.90089 0.87521 0.91512 0.86906 0.89377 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.55 13.26 21.45 0.28 -46.26 16 2 C 0.03 1.34 5.46 84.66 0.46 1.80 16 3 Si 0.95 38.45 29.54 68.60 2.03 40.48 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.53 -24.83 8.82 25.60 0.23 -24.60 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 9 C 0.02 1.07 3.80 -11.12 -0.04 1.03 16 10 C 0.10 4.04 8.18 83.19 0.68 4.72 16 11 N -0.64 -23.46 3.69 -857.67 -3.16 -26.62 16 12 C 0.54 20.09 6.40 87.66 0.56 20.65 16 13 O -0.58 -26.29 16.69 5.60 0.09 -26.20 16 14 C -0.08 -2.22 1.97 -12.42 -0.02 -2.25 16 15 H 0.14 3.38 7.32 -2.39 -0.02 3.37 16 16 C -0.04 -1.10 5.06 -19.58 -0.10 -1.20 16 17 C -0.13 -2.78 9.67 22.30 0.22 -2.56 16 18 C -0.07 -1.16 10.03 22.32 0.22 -0.94 16 19 C -0.12 -1.93 10.04 22.24 0.22 -1.71 16 20 C -0.06 -1.43 9.61 22.53 0.22 -1.21 16 21 C -0.19 -5.41 5.83 -20.08 -0.12 -5.53 16 22 C 0.53 18.23 7.36 70.44 0.52 18.75 16 23 O -0.49 -18.33 17.34 19.80 0.34 -17.98 16 24 O -0.34 -12.22 9.80 -63.73 -0.62 -12.85 16 25 C 0.10 2.81 0.33 -10.72 0.00 2.81 16 26 C -0.14 -2.95 7.26 30.99 0.23 -2.72 16 27 C -0.12 -2.42 8.03 31.17 0.25 -2.17 16 28 C -0.13 -3.33 6.75 31.00 0.21 -3.13 16 29 C 0.11 4.07 7.62 83.27 0.63 4.70 16 30 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 31 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 34 H 0.14 2.93 7.92 -2.91 -0.02 2.91 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 3.04 7.73 -2.91 -0.02 3.02 16 38 H 0.13 1.98 7.93 -2.38 -0.02 1.97 16 39 H 0.07 1.59 7.86 -2.39 -0.02 1.57 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 44 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 45 H 0.07 2.38 7.96 -2.39 -0.02 2.36 16 Total: -1.00 -67.00 377.76 4.33 -62.67 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.01 Total: 20.30 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.36 Total: 6.46 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.88 Total: -72.88 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -0.19 Total: -57.03 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -67.00 4.33 -62.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.023 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds