Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47021 * 2 1 4 4 C 1.35630 * 125.67644 * 263.41061 * 3 2 1 5 5 C 1.35513 * 108.84604 * 180.24236 * 4 3 2 6 6 Cl 1.73605 * 126.06945 * 179.78992 * 5 4 3 7 7 C 1.39885 * 107.85757 * 359.75497 * 5 4 3 8 8 C 1.37634 * 125.67357 * 83.22382 * 3 2 1 9 9 C 1.46669 * 126.22564 * 0.02687 * 8 3 2 10 10 O 1.21697 * 119.99762 * 4.73698 * 9 8 3 11 11 N 1.34780 * 120.00369 * 184.73145 * 9 8 3 12 12 C 1.46498 * 120.00092 * 174.99267 * 11 9 8 13 13 C 1.52999 * 109.46917 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.91132 * 308.89595 * 13 12 11 15 15 C 1.54904 * 111.00765 * 72.79838 * 13 12 11 16 16 N 1.47422 * 104.83427 * 155.08240 * 15 13 12 17 17 C 1.36937 * 125.65278 * 155.90470 * 16 15 13 18 18 H 1.08001 * 119.99552 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00406 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00174 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46914 * 90.00107 * 21 19 17 23 23 H 1.48500 * 109.47342 * 210.00171 * 21 19 17 24 24 H 1.48501 * 109.46955 * 330.00589 * 21 19 17 25 25 C 1.47030 * 108.70260 * 335.87313 * 16 15 13 26 26 C 1.54324 * 107.27052 * 1.05835 * 25 16 15 27 27 H 1.08998 * 110.87068 * 263.75910 * 26 25 16 28 28 O 1.42901 * 110.72215 * 140.55186 * 26 25 16 29 29 H 1.09000 * 109.47196 * 60.00121 * 1 2 3 30 30 H 1.09006 * 109.46515 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47228 * 299.99686 * 1 2 3 32 32 H 1.09001 * 109.47228 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47196 * 119.99879 * 2 1 3 34 34 H 1.07996 * 125.57192 * 359.97438 * 4 3 2 35 35 H 1.08001 * 126.45287 * 179.97438 * 7 5 4 36 36 H 0.97000 * 119.99652 * 354.98741 * 11 9 8 37 37 H 1.08998 * 109.47025 * 60.00012 * 12 11 9 38 38 H 1.08998 * 109.46980 * 299.99704 * 12 11 9 39 39 H 1.09002 * 110.37118 * 273.92413 * 15 13 12 40 40 H 1.09005 * 110.36275 * 36.24782 * 15 13 12 41 41 H 0.96996 * 120.00940 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.88571 * 241.63958 * 25 16 15 43 43 H 1.09005 * 109.88133 * 120.47025 * 25 16 15 44 44 H 0.96705 * 113.99582 * 66.47454 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4012 2.0849 -1.0945 5 6 2.7961 3.3210 -0.7041 6 17 3.3778 4.5840 -1.7435 7 6 2.6512 3.3989 0.6850 8 6 2.1615 2.1820 1.1103 9 6 1.8550 1.8070 2.4947 10 8 1.5132 0.6685 2.7552 11 7 1.9521 2.7233 3.4784 12 6 1.5414 2.3802 4.8421 13 6 1.7513 3.5884 5.7571 14 1 2.7613 3.9847 5.6527 15 6 0.6931 4.6852 5.4801 16 7 0.6010 5.4473 6.7386 17 6 0.1777 6.7442 6.8573 18 1 -0.1252 7.2958 5.9795 19 6 0.1378 7.3499 8.1056 20 7 0.5074 6.6779 9.1753 21 14 -0.4404 9.1188 8.2675 22 1 -1.9093 9.1414 8.4848 23 1 0.2407 9.7585 9.4216 24 1 -0.1123 9.8624 7.0247 25 6 1.0384 4.5841 7.8456 26 6 1.4457 3.2267 7.2347 27 1 0.6251 2.5118 7.2949 28 8 2.6115 2.7111 7.8804 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3965 1.7184 -2.1103 35 1 2.8800 4.2514 1.3073 36 1 2.2939 3.6098 3.2833 37 1 2.1397 1.5432 5.2020 38 1 0.4877 2.1015 4.8450 39 1 1.0219 5.3331 4.6674 40 1 -0.2688 4.2322 5.2397 41 1 0.4792 7.1009 10.0477 42 1 0.2196 4.4423 8.5510 43 1 1.8926 5.0341 8.3515 44 1 2.4738 2.4696 8.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958676836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -42.294598 kcal Electronic energy + Delta-G solvation = -27308.292201 eV Core-core repulsion = 23287.112975 eV Total energy + Delta-G solvation = -4021.179225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55980 -40.50244 -39.56849 -37.37092 -36.64401 -36.20436 -34.97848 -33.99019 -31.81309 -30.37530 -30.14017 -29.17354 -27.20886 -25.41149 -24.57047 -23.33658 -22.19899 -21.64668 -21.55178 -20.50046 -19.10715 -18.76476 -18.17105 -17.20585 -17.11136 -16.70556 -16.48647 -16.01882 -15.72439 -15.62222 -15.47188 -15.09737 -14.82782 -14.58389 -14.40153 -14.15031 -13.99626 -13.78564 -13.68222 -13.60394 -13.20141 -13.09937 -12.97685 -12.71554 -12.44423 -12.36782 -12.29376 -12.17274 -11.91862 -11.83277 -11.78711 -11.48563 -11.08073 -10.80890 -10.72753 -10.19937 -9.72532 -9.24258 -8.93041 -7.86040 -5.22399 0.33501 1.14359 1.44178 1.47176 1.48491 1.57207 1.70543 2.25230 2.38012 2.48544 3.23921 3.34786 3.57738 3.59788 3.75169 3.82042 3.90051 3.97379 4.10451 4.15517 4.21150 4.39396 4.40810 4.45975 4.47295 4.61440 4.72691 4.76973 4.84731 4.88540 4.94894 4.97355 5.17363 5.25198 5.34260 5.41786 5.44452 5.49594 5.71706 5.73621 6.07376 6.16949 6.44944 6.89387 7.07740 7.08913 7.74524 8.37622 9.24006 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.002655 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.715771 B =10543.723003 C =12084.435647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.401 5.401 4 C 0.051 3.949 5 C -0.142 4.142 6 Cl -0.049 7.049 7 C -0.128 4.128 8 C -0.058 4.058 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.152 3.848 13 C -0.090 4.090 14 H 0.087 0.913 15 C 0.139 3.861 16 N -0.625 5.625 17 C -0.242 4.242 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.267 1.267 25 C 0.161 3.839 26 C 0.098 3.902 27 H 0.077 0.923 28 O -0.570 6.570 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.211 0.789 35 H 0.161 0.839 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.247 0.753 42 H 0.013 0.987 43 H 0.019 0.981 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -13.703 -21.609 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.074 5.074 4 C -0.087 4.087 5 C -0.175 4.175 6 Cl -0.021 7.021 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.357 5.357 12 C 0.028 3.972 13 C -0.110 4.110 14 H 0.105 0.895 15 C 0.014 3.986 16 N -0.352 5.352 17 C -0.371 4.371 18 H 0.104 0.896 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.035 3.965 26 C 0.037 3.963 27 H 0.095 0.905 28 O -0.377 6.377 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.179 0.821 36 H 0.249 0.751 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.038 0.962 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.785 -14.525 -21.881 26.534 hybrid contribution -0.389 1.696 1.214 2.122 sum 3.396 -12.828 -20.667 24.561 Atomic orbital electron populations 1.22040 0.93642 1.04024 1.01918 1.22285 0.96241 0.77917 1.06102 1.44239 1.46009 1.12380 1.04781 1.22250 1.02253 0.90873 0.93331 1.20028 1.13537 0.92339 0.91579 1.98331 1.87600 1.50369 1.65765 1.21461 1.03062 0.96767 0.94190 1.19855 1.15976 0.93060 0.88307 1.17058 0.76958 0.84501 0.83820 1.90771 1.50126 1.20294 1.84362 1.45598 1.65460 1.16386 1.08238 1.21132 1.00406 0.96157 0.79504 1.22412 1.00486 0.95056 0.92999 0.89505 1.21796 0.95629 0.92009 0.89148 1.44612 1.77337 1.10275 1.02993 1.19486 1.36116 0.87766 0.93759 0.89566 1.25651 1.02339 1.02537 0.95373 1.70155 1.54673 1.37179 0.98015 0.85081 0.77441 0.79553 0.77275 1.21328 1.22247 1.19201 1.21596 0.96722 0.88367 0.89817 1.22881 0.87480 0.93978 0.91943 0.90540 1.86393 1.35707 1.85148 1.30432 0.91276 0.88862 0.94447 0.85434 0.89102 0.77217 0.82123 0.75097 0.90929 0.91176 0.92618 0.95165 0.94407 0.96892 0.96235 0.75736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.23 71.98 0.74 -1.50 16 2 C 0.09 1.32 6.14 86.38 0.53 1.85 16 3 N -0.40 -7.17 2.76 -510.87 -1.41 -8.58 16 4 C 0.05 0.75 11.35 83.48 0.95 1.70 16 5 C -0.14 -2.63 6.66 22.04 0.15 -2.48 16 6 Cl -0.05 -0.87 29.30 -2.72 -0.08 -0.95 16 7 C -0.13 -2.61 10.35 22.59 0.23 -2.38 16 8 C -0.06 -1.31 6.88 40.35 0.28 -1.03 16 9 C 0.59 15.41 7.77 86.44 0.67 16.08 16 10 O -0.57 -17.64 14.51 -4.34 -0.06 -17.70 16 11 N -0.71 -17.34 5.49 -467.09 -2.56 -19.90 16 12 C 0.15 4.16 5.14 86.38 0.44 4.60 16 13 C -0.09 -2.91 2.77 -9.40 -0.03 -2.94 16 14 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 15 C 0.14 5.28 6.65 86.85 0.58 5.86 16 16 N -0.63 -31.21 3.39 -691.98 -2.35 -33.56 16 17 C -0.24 -13.32 10.28 84.03 0.86 -12.46 16 18 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 20 N -0.95 -56.54 10.31 21.65 0.22 -56.32 16 21 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.16 7.73 5.15 86.73 0.45 8.17 16 26 C 0.10 3.49 3.80 31.78 0.12 3.61 16 27 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 28 O -0.57 -18.82 13.39 -148.98 -1.99 -20.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.04 0.77 7.85 -2.39 -0.02 0.75 16 32 H 0.13 0.83 8.12 -2.39 -0.02 0.81 16 33 H 0.09 1.67 6.61 -2.39 -0.02 1.66 16 34 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.16 2.88 7.45 -2.91 -0.02 2.86 16 36 H 0.41 8.82 7.37 -92.71 -0.68 8.14 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 1.96 7.96 -2.39 -0.02 1.94 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.13 7.91 -2.38 -0.02 1.11 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.01 0.69 7.51 -2.39 -0.02 0.67 16 43 H 0.02 1.07 7.29 -2.38 -0.02 1.06 16 44 H 0.39 10.01 9.12 -74.05 -0.68 9.33 16 Total: -1.00 -72.13 378.81 -0.09 -72.22 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.32 Total: 22.47 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.44 Total: 15.83 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.10 Total: -118.36 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -2.06 Total: -38.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -72.13 -0.09 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.930 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds