Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47026 * 2 1 4 4 C 1.35630 * 125.67654 * 260.74153 * 3 2 1 5 5 C 1.35518 * 108.85481 * 179.86613 * 4 3 2 6 6 Cl 1.73598 * 126.07474 * 180.15541 * 5 4 3 7 7 C 1.39893 * 107.84669 * 0.39031 * 5 4 3 8 8 C 1.37635 * 125.67605 * 81.04905 * 3 2 1 9 9 C 1.46671 * 126.22188 * 359.97438 * 8 3 2 10 10 O 1.21686 * 120.00186 * 5.43358 * 9 8 3 11 11 N 1.34776 * 119.99369 * 185.42941 * 9 8 3 12 12 C 1.46505 * 119.99451 * 185.18014 * 11 9 8 13 13 C 1.53007 * 109.47043 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.88578 * 302.57562 * 13 12 11 15 15 C 1.54911 * 111.00205 * 66.45226 * 13 12 11 16 16 N 1.47425 * 104.82954 * 155.08429 * 15 13 12 17 17 C 1.36939 * 125.65068 * 155.83770 * 16 15 13 18 18 H 1.07999 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99968 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00416 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 60.00187 * 21 19 17 23 23 H 1.48506 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47253 * 300.00109 * 21 19 17 25 25 C 1.47022 * 108.70274 * 335.86977 * 16 15 13 26 26 C 1.54327 * 107.27049 * 1.06098 * 25 16 15 27 27 H 1.09001 * 110.71851 * 140.55675 * 26 25 16 28 28 O 1.42895 * 110.72077 * 263.82476 * 26 25 16 29 29 H 1.09000 * 109.47686 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47415 * 299.99688 * 1 2 3 32 32 H 1.09004 * 109.47564 * 120.00116 * 2 1 3 33 33 H 1.09001 * 109.46906 * 240.00440 * 2 1 3 34 34 H 1.08001 * 125.57346 * 359.97438 * 4 3 2 35 35 H 1.07995 * 126.44735 * 179.79024 * 7 5 4 36 36 H 0.96994 * 120.00321 * 5.18704 * 11 9 8 37 37 H 1.08999 * 109.47287 * 300.00061 * 12 11 9 38 38 H 1.08995 * 109.47356 * 60.00459 * 12 11 9 39 39 H 1.08996 * 110.37167 * 273.92390 * 15 13 12 40 40 H 1.09005 * 110.36602 * 36.24704 * 15 13 12 41 41 H 0.96996 * 120.00192 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.88120 * 120.47827 * 25 16 15 43 43 H 1.08998 * 109.88646 * 241.48421 * 25 16 15 44 44 H 0.96701 * 114.00390 * 293.52730 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4490 2.0679 -1.0874 5 6 2.8191 3.3130 -0.7008 6 17 3.4348 4.5638 -1.7352 7 6 2.6219 3.4092 0.6808 8 6 2.1218 2.1960 1.1044 9 6 1.7649 1.8388 2.4815 10 8 1.4249 0.7008 2.7463 11 7 1.8136 2.7711 3.4535 12 6 1.5678 2.3902 4.8467 13 6 1.6815 3.6264 5.7411 14 1 2.6600 4.0946 5.6343 15 6 0.5466 4.6366 5.4389 16 7 0.3900 5.4116 6.6832 17 6 -0.1279 6.6758 6.7762 18 1 -0.4633 7.1887 5.8870 19 6 -0.2219 7.2980 8.0135 20 7 0.1872 6.6731 9.0972 21 14 -0.9278 9.0228 8.1402 22 1 -2.3225 9.0256 7.6304 23 1 -0.9195 9.4580 9.5601 24 1 -0.1032 9.9559 7.3312 25 6 0.8828 4.6026 7.8076 26 6 1.3937 3.2688 7.2231 27 1 2.3064 2.9512 7.7274 28 8 0.3870 2.2587 7.3133 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 2.4888 1.6857 -2.0967 35 1 2.8231 4.2716 1.2990 36 1 2.0112 3.6942 3.2308 37 1 0.5670 1.9678 4.9367 38 1 2.3043 1.6486 5.1560 39 1 0.8318 5.2928 4.6166 40 1 -0.3774 4.1093 5.2015 41 1 0.1219 7.1080 9.9617 42 1 1.6978 5.1236 8.3099 43 1 0.0728 4.4151 8.5124 44 1 0.1702 1.9992 8.2193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958676854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = -17.698071 kcal Electronic energy + Delta-G solvation = -27438.847191 eV Core-core repulsion = 23418.734551 eV Total energy + Delta-G solvation = -4020.112640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75228 -39.30159 -38.17401 -36.61469 -35.11378 -34.69885 -34.10471 -32.18358 -30.39928 -29.48655 -29.04579 -27.66891 -25.54515 -24.07023 -23.70092 -22.27771 -20.90038 -20.40863 -19.99191 -19.37011 -18.10248 -17.35724 -16.50563 -16.13693 -15.71984 -15.54637 -14.95397 -14.84309 -14.70473 -14.34095 -14.01833 -13.98972 -13.75271 -13.36583 -13.34653 -13.00873 -12.92252 -12.67544 -12.58536 -12.33865 -11.91645 -11.62896 -11.50379 -11.43305 -11.23009 -11.05704 -10.81062 -10.65959 -10.48457 -10.21283 -10.07669 -9.88724 -9.77792 -9.20656 -9.03776 -8.91595 -8.66786 -8.44135 -6.87933 -5.75625 -3.08702 1.21438 1.88907 2.21929 2.57353 3.25303 3.34242 3.39127 3.43511 3.44424 4.39040 4.45375 4.57382 4.61866 4.70896 4.74111 4.94511 5.00122 5.08945 5.25562 5.29871 5.37550 5.40195 5.52186 5.52802 5.57534 5.70413 5.86307 5.88309 6.01291 6.07212 6.18372 6.34810 6.37333 6.45142 6.52930 6.59626 6.78314 6.87813 7.36653 7.46828 7.50727 7.72837 8.15435 8.19277 8.21914 9.17232 9.77895 10.43203 11.36387 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.002693 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.358708 B =10395.888994 C =12025.999920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.030 3.970 5 C -0.122 4.122 6 Cl -0.051 7.051 7 C -0.130 4.130 8 C -0.030 4.030 9 C 0.586 3.414 10 O -0.547 6.547 11 N -0.711 5.711 12 C 0.143 3.857 13 C -0.110 4.110 14 H 0.090 0.910 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.153 3.847 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.564 6.564 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.403 0.597 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -12.659 -18.206 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.107 4.107 5 C -0.155 4.155 6 Cl -0.023 7.023 7 C -0.156 4.156 8 C -0.145 4.145 9 C 0.373 3.627 10 O -0.426 6.426 11 N -0.362 5.362 12 C 0.020 3.980 13 C -0.130 4.130 14 H 0.108 0.892 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.028 3.972 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.370 6.370 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.238 0.762 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.027 -13.529 -18.505 23.702 hybrid contribution -0.179 1.603 0.505 1.690 sum 5.848 -11.926 -18.000 22.370 Atomic orbital electron populations 1.22084 0.93632 1.03323 1.03185 1.22115 0.96318 0.78694 1.05091 1.44029 1.45752 1.11920 1.05598 1.21687 1.04631 0.91852 0.92569 1.19890 1.12189 0.91405 0.91979 1.98329 1.86357 1.51273 1.66334 1.21266 1.03903 0.96887 0.93556 1.20113 1.13477 0.91934 0.88930 1.16837 0.77698 0.85140 0.83003 1.90792 1.48489 1.20100 1.83260 1.45788 1.71255 1.11538 1.07600 1.21225 1.02638 0.96584 0.77556 1.22693 1.00751 0.95549 0.94009 0.89211 1.21572 0.94322 0.91738 0.90519 1.44358 1.73546 1.14061 1.00925 1.19034 1.33814 0.89239 0.93497 0.90391 1.24787 1.01465 0.98781 0.95427 1.69915 1.52581 1.37061 0.97765 0.86174 0.78915 0.83865 0.76665 1.21158 1.21609 1.21109 1.21860 0.98440 0.86827 0.90089 1.23110 0.89819 0.89887 0.94856 0.92483 1.86397 1.60007 1.58216 1.32358 0.92294 0.90485 0.91109 0.87344 0.89112 0.80684 0.82808 0.76154 0.89902 0.91683 0.94477 0.95673 0.93690 0.92962 0.93189 0.77763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.16 37.15 0.38 -1.00 16 2 C 0.10 0.82 6.11 -4.04 -0.02 0.79 16 3 N -0.40 -4.08 2.77 -112.83 -0.31 -4.39 16 4 C 0.03 0.27 11.34 -16.84 -0.19 0.08 16 5 C -0.12 -1.27 6.66 -39.93 -0.27 -1.53 16 6 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 7 C -0.13 -1.43 10.34 -39.09 -0.40 -1.84 16 8 C -0.03 -0.37 6.88 -81.98 -0.56 -0.93 16 9 C 0.59 8.13 7.77 -12.86 -0.10 8.03 16 10 O -0.55 -8.81 14.26 5.20 0.07 -8.74 16 11 N -0.71 -9.38 5.38 -61.62 -0.33 -9.71 16 12 C 0.14 2.13 4.74 -4.04 -0.02 2.11 16 13 C -0.11 -1.82 3.03 -88.47 -0.27 -2.08 16 14 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.14 2.90 6.40 -2.53 -0.02 2.89 16 16 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 17 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.93 -26.61 10.31 55.49 0.57 -26.03 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.54 5.14 -3.06 -0.02 3.53 16 26 C 0.08 1.48 4.08 -24.90 -0.10 1.38 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.56 -9.59 12.09 -35.23 -0.43 -10.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.80 7.59 -51.93 -0.39 0.41 16 32 H 0.11 1.07 6.73 -51.93 -0.35 0.72 16 33 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.48 7.49 -52.49 -0.39 1.09 16 36 H 0.40 4.67 7.29 -40.82 -0.30 4.37 16 37 H 0.08 1.43 7.42 -51.93 -0.39 1.04 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 43 H 0.05 1.29 7.43 -51.93 -0.39 0.90 16 44 H 0.38 5.02 9.12 45.56 0.42 5.44 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -32.85 376.41 -9.23 -42.08 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.51 Total: 7.22 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.84 Total: 4.67 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.65 Total: -55.74 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.35 Total: -18.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.85 -9.23 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.386 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds