Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47026 * 2 1 4 4 C 1.35630 * 125.67654 * 260.74153 * 3 2 1 5 5 C 1.35518 * 108.85481 * 179.86613 * 4 3 2 6 6 Cl 1.73598 * 126.07474 * 180.15541 * 5 4 3 7 7 C 1.39893 * 107.84669 * 0.39031 * 5 4 3 8 8 C 1.37635 * 125.67605 * 81.04905 * 3 2 1 9 9 C 1.46671 * 126.22188 * 359.97438 * 8 3 2 10 10 O 1.21686 * 120.00186 * 5.43358 * 9 8 3 11 11 N 1.34776 * 119.99369 * 185.42941 * 9 8 3 12 12 C 1.46505 * 119.99451 * 185.18014 * 11 9 8 13 13 C 1.53007 * 109.47043 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.88578 * 302.57562 * 13 12 11 15 15 C 1.54911 * 111.00205 * 66.45226 * 13 12 11 16 16 N 1.47425 * 104.82954 * 155.08429 * 15 13 12 17 17 C 1.36939 * 125.65068 * 155.83770 * 16 15 13 18 18 H 1.07999 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99968 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00416 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 60.00187 * 21 19 17 23 23 H 1.48506 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47253 * 300.00109 * 21 19 17 25 25 C 1.47022 * 108.70274 * 335.86977 * 16 15 13 26 26 C 1.54327 * 107.27049 * 1.06098 * 25 16 15 27 27 H 1.09001 * 110.71851 * 140.55675 * 26 25 16 28 28 O 1.42895 * 110.72077 * 263.82476 * 26 25 16 29 29 H 1.09000 * 109.47686 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47415 * 299.99688 * 1 2 3 32 32 H 1.09004 * 109.47564 * 120.00116 * 2 1 3 33 33 H 1.09001 * 109.46906 * 240.00440 * 2 1 3 34 34 H 1.08001 * 125.57346 * 359.97438 * 4 3 2 35 35 H 1.07995 * 126.44735 * 179.79024 * 7 5 4 36 36 H 0.96994 * 120.00321 * 5.18704 * 11 9 8 37 37 H 1.08999 * 109.47287 * 300.00061 * 12 11 9 38 38 H 1.08995 * 109.47356 * 60.00459 * 12 11 9 39 39 H 1.08996 * 110.37167 * 273.92390 * 15 13 12 40 40 H 1.09005 * 110.36602 * 36.24704 * 15 13 12 41 41 H 0.96996 * 120.00192 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.88120 * 120.47827 * 25 16 15 43 43 H 1.08998 * 109.88646 * 241.48421 * 25 16 15 44 44 H 0.96701 * 114.00390 * 293.52730 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4490 2.0679 -1.0874 5 6 2.8191 3.3130 -0.7008 6 17 3.4348 4.5638 -1.7352 7 6 2.6219 3.4092 0.6808 8 6 2.1218 2.1960 1.1044 9 6 1.7649 1.8388 2.4815 10 8 1.4249 0.7008 2.7463 11 7 1.8136 2.7711 3.4535 12 6 1.5678 2.3902 4.8467 13 6 1.6815 3.6264 5.7411 14 1 2.6600 4.0946 5.6343 15 6 0.5466 4.6366 5.4389 16 7 0.3900 5.4116 6.6832 17 6 -0.1279 6.6758 6.7762 18 1 -0.4633 7.1887 5.8870 19 6 -0.2219 7.2980 8.0135 20 7 0.1872 6.6731 9.0972 21 14 -0.9278 9.0228 8.1402 22 1 -2.3225 9.0256 7.6304 23 1 -0.9195 9.4580 9.5601 24 1 -0.1032 9.9559 7.3312 25 6 0.8828 4.6026 7.8076 26 6 1.3937 3.2688 7.2231 27 1 2.3064 2.9512 7.7274 28 8 0.3870 2.2587 7.3133 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 2.4888 1.6857 -2.0967 35 1 2.8231 4.2716 1.2990 36 1 2.0112 3.6942 3.2308 37 1 0.5670 1.9678 4.9367 38 1 2.3043 1.6486 5.1560 39 1 0.8318 5.2928 4.6166 40 1 -0.3774 4.1093 5.2015 41 1 0.1219 7.1080 9.9617 42 1 1.6978 5.1236 8.3099 43 1 0.0728 4.4151 8.5124 44 1 0.1702 1.9992 8.2193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958676854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = -40.687613 kcal Electronic energy + Delta-G solvation = -27439.844093 eV Core-core repulsion = 23418.734551 eV Total energy + Delta-G solvation = -4021.109541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55465 -40.51294 -39.58310 -37.36863 -36.41238 -36.18256 -34.95868 -33.90393 -31.78147 -30.39599 -30.13782 -29.26415 -27.22085 -25.44078 -24.57986 -23.35753 -22.15735 -21.62338 -21.34986 -20.46642 -19.14544 -18.95993 -18.05156 -17.19222 -16.80464 -16.66321 -16.52719 -15.95606 -15.71305 -15.50525 -15.39548 -15.09864 -15.03174 -14.69437 -14.37244 -14.22118 -14.13050 -13.75752 -13.61505 -13.54190 -13.12740 -13.06906 -12.98319 -12.64097 -12.39776 -12.35056 -12.18319 -12.07882 -11.90687 -11.82938 -11.77375 -11.56201 -11.03532 -10.77815 -10.71176 -10.16436 -9.72365 -9.23745 -8.90449 -7.85636 -5.20667 0.34477 1.14631 1.44721 1.46595 1.49378 1.55437 1.72535 2.26298 2.40285 2.49382 3.28245 3.36538 3.56710 3.65717 3.79501 3.91922 3.96458 3.97335 4.01790 4.09866 4.21492 4.38884 4.44041 4.47678 4.58981 4.63462 4.74287 4.84299 4.84482 4.90339 4.96657 5.01270 5.17491 5.30668 5.37062 5.42514 5.44824 5.54008 5.70979 5.73995 6.07690 6.18282 6.47535 6.94033 7.09775 7.12107 7.76497 8.40646 9.24317 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.002693 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.358708 B =10395.888994 C =12025.999920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.096 3.904 3 N -0.402 5.402 4 C 0.050 3.950 5 C -0.142 4.142 6 Cl -0.048 7.048 7 C -0.127 4.127 8 C -0.059 4.059 9 C 0.586 3.414 10 O -0.575 6.575 11 N -0.707 5.707 12 C 0.160 3.840 13 C -0.093 4.093 14 H 0.109 0.891 15 C 0.143 3.857 16 N -0.624 5.624 17 C -0.244 4.244 18 H 0.082 0.918 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.159 3.841 26 C 0.097 3.903 27 H 0.089 0.911 28 O -0.570 6.570 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.211 0.789 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.011 0.989 41 H 0.247 0.753 42 H 0.023 0.977 43 H 0.014 0.986 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -13.176 -20.619 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.075 5.075 4 C -0.087 4.087 5 C -0.175 4.175 6 Cl -0.020 7.020 7 C -0.154 4.154 8 C -0.172 4.172 9 C 0.375 3.625 10 O -0.456 6.456 11 N -0.358 5.358 12 C 0.036 3.964 13 C -0.113 4.113 14 H 0.127 0.873 15 C 0.018 3.982 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.100 0.900 19 C -0.257 4.257 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.200 1.200 25 C 0.034 3.966 26 C 0.036 3.964 27 H 0.106 0.894 28 O -0.378 6.378 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.228 0.772 35 H 0.180 0.820 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.029 0.971 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.913 -14.053 -20.937 26.146 hybrid contribution -0.492 1.738 1.179 2.157 sum 6.421 -12.315 -19.758 24.151 Atomic orbital electron populations 1.22036 0.93842 1.03990 1.01810 1.22257 0.96092 0.77961 1.06062 1.44240 1.45443 1.12428 1.05358 1.22260 1.01924 0.91095 0.93459 1.20024 1.13320 0.92259 0.91867 1.98329 1.86367 1.51257 1.66052 1.21460 1.02950 0.96747 0.94249 1.19878 1.15730 0.93010 0.88600 1.17089 0.76989 0.84663 0.83800 1.90774 1.49840 1.21206 1.83828 1.45660 1.71228 1.12027 1.06909 1.20900 1.01594 0.95631 0.78261 1.22583 1.00088 0.95142 0.93459 0.87322 1.21671 0.95094 0.92230 0.89231 1.44681 1.73327 1.13953 1.03099 1.19430 1.33536 0.90558 0.93747 0.90045 1.25606 1.02370 1.02510 0.95246 1.70133 1.53722 1.38283 0.97840 0.85168 0.78317 0.79662 0.76284 1.20685 1.22039 1.20033 1.21693 0.96205 0.89212 0.89497 1.22944 0.90668 0.87266 0.95483 0.89355 1.86380 1.60044 1.57421 1.33977 0.91304 0.88877 0.94650 0.89223 0.85265 0.77195 0.82038 0.75164 0.92257 0.90737 0.93127 0.97142 0.94374 0.95855 0.96817 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.16 71.98 0.73 -1.73 16 2 C 0.10 1.41 6.11 86.38 0.53 1.94 16 3 N -0.40 -7.40 2.77 -510.87 -1.41 -8.81 16 4 C 0.05 0.76 11.34 83.48 0.95 1.71 16 5 C -0.14 -2.65 6.66 22.04 0.15 -2.50 16 6 Cl -0.05 -0.86 29.30 -2.72 -0.08 -0.94 16 7 C -0.13 -2.62 10.34 22.59 0.23 -2.39 16 8 C -0.06 -1.35 6.88 40.35 0.28 -1.07 16 9 C 0.59 16.01 7.77 86.45 0.67 16.68 16 10 O -0.57 -18.58 14.26 -4.30 -0.06 -18.65 16 11 N -0.71 -18.05 5.38 -467.08 -2.51 -20.56 16 12 C 0.16 4.61 4.74 86.38 0.41 5.02 16 13 C -0.09 -2.96 3.03 -9.40 -0.03 -2.99 16 14 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 15 C 0.14 5.70 6.40 86.86 0.56 6.26 16 16 N -0.62 -31.59 3.39 -691.99 -2.35 -33.94 16 17 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 20 N -0.95 -56.23 10.31 21.65 0.22 -56.00 16 21 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 C 0.16 7.55 5.14 86.73 0.45 8.00 16 26 C 0.10 3.35 4.08 31.78 0.13 3.48 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 28 O -0.57 -19.03 12.09 -148.98 -1.80 -20.84 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.03 0.80 7.59 -2.39 -0.02 0.78 16 32 H 0.09 1.70 6.73 -2.38 -0.02 1.69 16 33 H 0.13 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.16 2.89 7.49 -2.91 -0.02 2.87 16 36 H 0.41 9.04 7.29 -92.71 -0.68 8.36 16 37 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.01 0.46 8.00 -2.38 -0.02 0.44 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 43 H 0.01 0.74 7.43 -2.39 -0.02 0.72 16 44 H 0.39 10.25 9.12 -74.06 -0.68 9.57 16 Total: -1.00 -73.09 376.41 0.10 -72.99 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.31 Total: 22.73 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 6.38 Total: 16.51 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.05 Total: -119.32 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.86 Total: -39.48 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -73.09 0.10 -72.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.306 kcal (2) G-P(sol) polarization free energy of solvation -73.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds