Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47171 * 2 1 4 4 C 1.35625 * 125.68190 * 262.63039 * 3 2 1 5 5 C 1.35516 * 108.85535 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 126.07325 * 179.97438 * 5 4 3 7 7 C 1.39885 * 107.85002 * 359.77618 * 5 4 3 8 8 C 1.37640 * 125.67555 * 82.63057 * 3 2 1 9 9 C 1.46677 * 126.22220 * 359.96354 * 8 3 2 10 10 O 1.21700 * 120.00053 * 5.41527 * 9 8 3 11 11 N 1.34774 * 119.99980 * 185.41354 * 9 8 3 12 12 C 1.46506 * 119.99881 * 175.07761 * 11 9 8 13 13 C 1.52994 * 109.47103 * 180.02562 * 12 11 9 14 14 H 1.09006 * 110.89091 * 57.42600 * 13 12 11 15 15 C 1.54912 * 111.00242 * 293.54702 * 13 12 11 16 16 N 1.47429 * 104.83057 * 204.87728 * 15 13 12 17 17 C 1.36932 * 125.65047 * 204.08958 * 16 15 13 18 18 H 1.08006 * 119.99577 * 5.47028 * 17 16 15 19 19 C 1.38811 * 120.00246 * 185.47063 * 17 16 15 20 20 N 1.31617 * 119.99942 * 5.78419 * 19 17 16 21 21 Si 1.86803 * 119.99909 * 185.78532 * 19 17 16 22 22 H 1.48508 * 109.47120 * 84.99801 * 21 19 17 23 23 H 1.48497 * 109.47156 * 324.99800 * 21 19 17 24 24 H 1.48499 * 109.46847 * 204.99596 * 21 19 17 25 25 C 1.47021 * 108.70394 * 24.35634 * 16 15 13 26 26 C 1.54343 * 107.26389 * 358.58439 * 25 16 15 27 27 H 1.09005 * 110.84789 * 219.67082 * 26 25 16 28 28 O 1.42898 * 110.66478 * 96.52475 * 26 25 16 29 29 H 1.09008 * 109.46775 * 299.99884 * 1 2 3 30 30 H 1.08999 * 109.47128 * 59.99371 * 1 2 3 31 31 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47166 * 240.00219 * 2 1 3 33 33 H 1.09001 * 109.47525 * 120.00280 * 2 1 3 34 34 H 1.08005 * 125.56924 * 0.02562 * 4 3 2 35 35 H 1.08004 * 126.45476 * 180.22634 * 7 5 4 36 36 H 0.96996 * 119.99893 * 355.08208 * 11 9 8 37 37 H 1.09000 * 109.47167 * 60.00143 * 12 11 9 38 38 H 1.08999 * 109.46839 * 300.00067 * 12 11 9 39 39 H 1.08992 * 110.36700 * 86.04269 * 15 13 12 40 40 H 1.08992 * 110.45857 * 323.76153 * 15 13 12 41 41 H 0.97000 * 119.99983 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.88537 * 118.12579 * 25 16 15 43 43 H 1.09005 * 109.88507 * 239.29689 * 25 16 15 44 44 H 0.96700 * 114.00240 * 66.41628 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4153 2.0800 -1.0925 5 6 2.7997 3.3199 -0.7036 6 17 3.3882 4.5804 -1.7421 7 6 2.6336 3.4051 0.6828 8 6 2.1507 2.1859 1.1089 9 6 1.8295 1.8160 2.4914 10 8 1.4958 0.6756 2.7544 11 7 1.9039 2.7392 3.4705 12 6 1.4802 2.3995 4.8312 13 6 1.6649 3.6154 5.7413 14 1 1.1060 4.4718 5.3640 15 6 3.1656 3.9614 5.9078 16 7 3.2480 4.6737 7.1960 17 6 4.2283 5.5589 7.5572 18 1 4.9809 5.8532 6.8406 19 6 4.2547 6.0781 8.8443 20 7 3.4087 5.6352 9.7501 21 14 5.4910 7.4054 9.2908 22 1 4.9454 8.7355 8.9184 23 1 6.7596 7.1675 8.5565 24 1 5.7506 7.3685 10.7524 25 6 2.1069 4.2713 8.0311 26 6 1.2575 3.2851 7.2015 27 1 0.1934 3.4651 7.3552 28 8 1.5919 1.9344 7.5266 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.4228 1.7091 -2.1069 35 1 2.8464 4.2633 1.3030 36 1 2.2379 3.6284 3.2743 37 1 2.0834 1.5715 5.2036 38 1 0.4297 2.1087 4.8227 39 1 3.4984 4.6073 5.0954 40 1 3.7652 3.0518 5.9383 41 1 3.4269 5.9983 10.6494 42 1 2.4647 3.7835 8.9378 43 1 1.5096 5.1459 8.2891 44 1 1.3577 1.6774 8.4289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958676857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = -41.161646 kcal Electronic energy + Delta-G solvation = -27411.721689 eV Core-core repulsion = 23390.591592 eV Total energy + Delta-G solvation = -4021.130097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55642 -40.51289 -39.58196 -37.36909 -36.40949 -36.18281 -34.95876 -33.90812 -31.78410 -30.38685 -30.14233 -29.26542 -27.22443 -25.44182 -24.57644 -23.36006 -22.16215 -21.62054 -21.35099 -20.47367 -19.14650 -18.95078 -18.06100 -17.19124 -16.80242 -16.69612 -16.49187 -15.90814 -15.72911 -15.60289 -15.35809 -15.13362 -14.92917 -14.74554 -14.37870 -14.20152 -14.13690 -13.77394 -13.62431 -13.51383 -13.20326 -13.02192 -12.97188 -12.69316 -12.36995 -12.33054 -12.18412 -12.05067 -11.90652 -11.83152 -11.76975 -11.57052 -11.03210 -10.82763 -10.67185 -10.16845 -9.72413 -9.23862 -8.89772 -7.85323 -5.21611 0.34322 1.14586 1.44437 1.46803 1.48466 1.56426 1.72282 2.25877 2.40095 2.49357 3.28658 3.35326 3.56503 3.65560 3.79551 3.92004 3.96335 3.97126 4.02199 4.10512 4.21372 4.39783 4.44019 4.47812 4.58223 4.63286 4.75395 4.84261 4.85204 4.90472 4.96658 5.01427 5.17844 5.30731 5.37130 5.37913 5.44976 5.54615 5.72508 5.73941 6.07600 6.18857 6.47291 6.94252 7.09216 7.11878 7.76322 8.40744 9.24020 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.002695 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.553133 B =10385.297961 C =12341.105397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.401 5.401 4 C 0.051 3.949 5 C -0.142 4.142 6 Cl -0.049 7.049 7 C -0.128 4.128 8 C -0.058 4.058 9 C 0.586 3.414 10 O -0.575 6.575 11 N -0.707 5.707 12 C 0.160 3.840 13 C -0.093 4.093 14 H 0.110 0.890 15 C 0.142 3.858 16 N -0.623 5.623 17 C -0.243 4.243 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.283 1.283 23 H -0.271 1.271 24 H -0.296 1.296 25 C 0.155 3.845 26 C 0.097 3.903 27 H 0.089 0.911 28 O -0.571 6.571 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.211 0.789 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.009 0.991 41 H 0.247 0.753 42 H 0.027 0.973 43 H 0.012 0.988 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 -8.987 -23.390 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.074 5.074 4 C -0.087 4.087 5 C -0.174 4.174 6 Cl -0.020 7.020 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.375 3.625 10 O -0.457 6.457 11 N -0.358 5.358 12 C 0.036 3.964 13 C -0.112 4.112 14 H 0.128 0.872 15 C 0.017 3.983 16 N -0.349 5.349 17 C -0.372 4.372 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.196 1.196 24 H -0.222 1.222 25 C 0.030 3.970 26 C 0.037 3.963 27 H 0.107 0.893 28 O -0.378 6.378 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.228 0.772 35 H 0.179 0.821 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.030 0.970 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.343 -9.952 -23.662 26.700 hybrid contribution 0.818 1.428 1.412 2.168 sum -6.525 -8.524 -22.251 24.705 Atomic orbital electron populations 1.22027 0.93421 1.04033 1.01983 1.22278 0.96433 0.77950 1.05967 1.44236 1.45863 1.12398 1.04926 1.22253 1.02166 0.90942 0.93370 1.20020 1.13488 0.92270 0.91670 1.98330 1.87372 1.50513 1.65799 1.21457 1.03082 0.96719 0.94200 1.19868 1.16068 0.92919 0.88333 1.17095 0.77021 0.84556 0.83871 1.90777 1.50417 1.20303 1.84203 1.45657 1.65552 1.15851 1.08739 1.20894 1.00124 0.96387 0.78972 1.22575 0.97226 0.97964 0.93463 0.87226 1.21674 0.94250 0.94221 0.88161 1.44700 1.26759 1.49425 1.14043 1.19455 1.05288 1.16515 0.95908 0.90010 1.25629 1.01506 1.02845 0.95859 1.70138 1.40723 1.45826 1.03210 0.85109 0.78743 0.79014 0.76551 1.20962 1.19634 1.22240 1.21729 0.87743 0.94596 0.92935 1.22933 0.97593 0.81882 0.93898 0.89345 1.86381 1.86944 1.27789 1.36726 0.94341 0.91133 0.88909 0.85479 0.89392 0.77201 0.82085 0.75154 0.92290 0.90753 0.93002 0.97301 0.94394 0.95474 0.96998 0.75974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.21 71.98 0.74 -1.45 16 2 C 0.09 1.36 6.13 86.38 0.53 1.89 16 3 N -0.40 -7.37 2.76 -510.87 -1.41 -8.78 16 4 C 0.05 0.76 11.35 83.48 0.95 1.71 16 5 C -0.14 -2.65 6.66 22.04 0.15 -2.50 16 6 Cl -0.05 -0.86 29.30 -2.72 -0.08 -0.94 16 7 C -0.13 -2.65 10.35 22.59 0.23 -2.41 16 8 C -0.06 -1.34 6.88 40.35 0.28 -1.06 16 9 C 0.59 16.01 7.77 86.45 0.67 16.68 16 10 O -0.58 -18.64 14.45 -4.35 -0.06 -18.70 16 11 N -0.71 -18.01 5.39 -467.08 -2.52 -20.53 16 12 C 0.16 4.61 4.74 86.38 0.41 5.02 16 13 C -0.09 -2.93 3.03 -9.40 -0.03 -2.96 16 14 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 15 C 0.14 5.66 6.40 86.86 0.56 6.22 16 16 N -0.62 -31.48 3.39 -691.95 -2.35 -33.83 16 17 C -0.24 -13.50 10.27 84.03 0.86 -12.64 16 18 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 19 C -0.07 -3.69 5.46 84.86 0.46 -3.23 16 20 N -0.95 -56.33 10.42 21.65 0.23 -56.11 16 21 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.16 7.35 5.17 86.74 0.45 7.80 16 26 C 0.10 3.36 4.09 31.79 0.13 3.49 16 27 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 28 O -0.57 -19.17 12.09 -148.98 -1.80 -20.97 16 29 H 0.04 0.77 7.80 -2.38 -0.02 0.76 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 0.91 8.11 -2.39 -0.02 0.89 16 33 H 0.09 1.73 6.64 -2.39 -0.02 1.71 16 34 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.16 2.91 7.45 -2.91 -0.02 2.89 16 36 H 0.41 8.98 7.24 -92.71 -0.67 8.31 16 37 H 0.06 2.02 7.43 -2.39 -0.02 2.01 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.01 0.40 8.01 -2.39 -0.02 0.38 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.03 1.47 7.01 -2.39 -0.02 1.45 16 43 H 0.01 0.62 7.82 -2.38 -0.02 0.60 16 44 H 0.39 10.38 9.12 -74.06 -0.68 9.70 16 Total: -1.00 -73.28 376.88 0.11 -73.17 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.31 Total: 22.60 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.38 Total: 16.56 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -6.05 Total: -119.25 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.86 Total: -39.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -73.28 0.11 -73.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.008 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds