Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46968 * 2 1 4 4 C 1.35631 * 125.67760 * 263.16612 * 3 2 1 5 5 C 1.35516 * 108.85332 * 180.24279 * 4 3 2 6 6 Cl 1.73601 * 126.07197 * 179.78513 * 5 4 3 7 7 C 1.39890 * 107.85226 * 359.75398 * 5 4 3 8 8 C 1.37643 * 125.68028 * 82.98209 * 3 2 1 9 9 C 1.46667 * 126.21720 * 0.02562 * 8 3 2 10 10 O 1.21699 * 120.00123 * 4.75172 * 9 8 3 11 11 N 1.34781 * 119.99915 * 184.74771 * 9 8 3 12 12 C 1.46494 * 120.00132 * 175.03784 * 11 9 8 13 13 C 1.52998 * 109.47035 * 179.97438 * 12 11 9 14 14 H 1.08995 * 110.88573 * 57.43163 * 13 12 11 15 15 C 1.54905 * 111.00753 * 293.54520 * 13 12 11 16 16 N 1.47424 * 104.93177 * 204.85954 * 15 13 12 17 17 C 1.36936 * 125.65180 * 204.15642 * 16 15 13 18 18 H 1.08005 * 119.99592 * 354.95224 * 17 16 15 19 19 C 1.38815 * 120.00102 * 174.95476 * 17 16 15 20 20 N 1.31609 * 120.00073 * 5.56431 * 19 17 16 21 21 Si 1.86798 * 119.99831 * 185.56400 * 19 17 16 22 22 H 1.48499 * 109.47330 * 94.99365 * 21 19 17 23 23 H 1.48503 * 109.47254 * 214.99480 * 21 19 17 24 24 H 1.48505 * 109.47253 * 334.99703 * 21 19 17 25 25 C 1.47286 * 108.55566 * 24.15893 * 16 15 13 26 26 C 1.54318 * 107.30845 * 358.92254 * 25 16 15 27 27 H 1.08999 * 110.87494 * 96.25326 * 26 25 16 28 28 O 1.42907 * 110.72230 * 219.45735 * 26 25 16 29 29 H 1.09008 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47228 * 300.00007 * 1 2 3 31 31 H 1.09003 * 109.47247 * 60.00720 * 1 2 3 32 32 H 1.09002 * 109.47416 * 239.99604 * 2 1 3 33 33 H 1.09008 * 109.47451 * 119.99699 * 2 1 3 34 34 H 1.08006 * 125.57144 * 359.97438 * 4 3 2 35 35 H 1.08002 * 126.45186 * 180.02562 * 7 5 4 36 36 H 0.96997 * 119.99313 * 355.03449 * 11 9 8 37 37 H 1.09001 * 109.47297 * 60.00233 * 12 11 9 38 38 H 1.09000 * 109.47448 * 300.00144 * 12 11 9 39 39 H 1.09003 * 110.37037 * 323.75693 * 15 13 12 40 40 H 1.08998 * 110.36781 * 85.96618 * 15 13 12 41 41 H 0.97002 * 120.00298 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.85436 * 239.49717 * 25 16 15 43 43 H 1.09000 * 110.00359 * 118.43299 * 25 16 15 44 44 H 0.96705 * 113.99579 * 293.52188 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4055 2.0833 -1.0939 5 6 2.7989 3.3200 -0.7038 6 17 3.3849 4.5814 -1.7428 7 6 2.6484 3.3999 0.6846 8 6 2.1570 2.1837 1.1097 9 6 1.8451 1.8106 2.4934 10 8 1.5024 0.6723 2.7542 11 7 1.9379 2.7284 3.4760 12 6 1.5227 2.3869 4.8388 13 6 1.7296 3.5962 5.7530 14 1 1.1770 4.4606 5.3849 15 6 3.2356 3.9244 5.9075 16 7 3.3401 4.6300 7.1977 17 6 4.3342 5.5027 7.5518 18 1 5.1739 5.6614 6.8914 19 6 4.2626 6.1833 8.7596 20 7 3.2986 5.9100 9.6128 21 14 5.5346 7.4871 9.1737 22 1 5.0136 8.8250 8.7947 23 1 5.8147 7.4599 10.6318 24 1 6.7867 7.2129 8.4239 25 6 2.1971 4.2386 8.0400 26 6 1.3320 3.2625 7.2152 27 1 1.5776 2.2280 7.4551 28 8 -0.0583 3.5131 7.4308 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.4049 1.7153 -2.1093 35 1 2.8740 4.2536 1.3065 36 1 2.2797 3.6149 3.2808 37 1 2.1205 1.5509 5.2021 38 1 0.4692 2.1073 4.8384 39 1 3.8237 3.0069 5.9282 40 1 3.5686 4.5693 5.0944 41 1 3.2487 6.3852 10.4569 42 1 1.6125 5.1201 8.3036 43 1 2.5522 3.7454 8.9448 44 1 -0.3579 3.3203 8.3298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958676860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -19.603349 kcal Electronic energy + Delta-G solvation = -27307.132266 eV Core-core repulsion = 23286.937007 eV Total energy + Delta-G solvation = -4020.195259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.77496 -39.33490 -38.13184 -36.62313 -35.27833 -34.83506 -34.14251 -32.28089 -30.43733 -29.51699 -29.06754 -27.53514 -25.59942 -24.08215 -23.69687 -22.30261 -20.91309 -20.45632 -20.14699 -19.45110 -18.14795 -16.97080 -16.75796 -16.18540 -15.83570 -15.64384 -15.16916 -14.90024 -14.71301 -14.42662 -14.13750 -14.01272 -13.76221 -13.38370 -13.17736 -13.01312 -12.90926 -12.67490 -12.46893 -12.37280 -12.06681 -11.64948 -11.55182 -11.47525 -11.25966 -11.07010 -10.98702 -10.83537 -10.61319 -10.17328 -10.05067 -9.86352 -9.80443 -9.25894 -9.10654 -8.93945 -8.66534 -8.46384 -6.91958 -5.78611 -3.12253 1.18496 1.87548 2.20157 2.54495 3.21139 3.29021 3.37559 3.42964 3.44719 4.36938 4.41927 4.54737 4.59195 4.70286 4.70993 4.92471 4.97050 5.00169 5.16608 5.22442 5.34560 5.40626 5.47666 5.49430 5.63945 5.69133 5.79649 5.81606 5.96321 6.00460 6.16308 6.17890 6.31481 6.39215 6.49786 6.53338 6.76134 6.79294 7.33627 7.45170 7.49513 7.72583 8.10228 8.15730 8.17297 9.13252 9.74286 10.38894 11.33478 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002685 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.282100 B =10427.410138 C =12299.285400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.400 5.400 4 C 0.030 3.970 5 C -0.122 4.122 6 Cl -0.051 7.051 7 C -0.129 4.129 8 C -0.031 4.031 9 C 0.588 3.412 10 O -0.548 6.548 11 N -0.709 5.709 12 C 0.137 3.863 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.150 3.850 26 C 0.084 3.916 27 H 0.057 0.943 28 O -0.567 6.567 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.405 0.595 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.023 0.977 40 H 0.043 0.957 41 H 0.253 0.747 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -10.413 -20.414 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.073 5.073 4 C -0.107 4.107 5 C -0.155 4.155 6 Cl -0.022 7.022 7 C -0.155 4.155 8 C -0.145 4.145 9 C 0.375 3.625 10 O -0.428 6.428 11 N -0.360 5.360 12 C 0.014 3.986 13 C -0.128 4.128 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.025 3.975 26 C 0.024 3.976 27 H 0.075 0.925 28 O -0.371 6.371 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.240 0.760 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.618 -11.186 -20.688 24.180 hybrid contribution 0.917 1.171 0.642 1.620 sum -4.701 -10.015 -20.046 22.896 Atomic orbital electron populations 1.22083 0.93726 1.03287 1.03055 1.22134 0.96216 0.78743 1.05271 1.44020 1.46367 1.11823 1.05093 1.21691 1.04896 0.91683 0.92391 1.19893 1.12293 0.91529 0.91735 1.98331 1.87423 1.50438 1.66034 1.21281 1.03785 0.96925 0.93500 1.20065 1.13814 0.92053 0.88611 1.16842 0.77625 0.84958 0.83100 1.90788 1.48890 1.19312 1.83826 1.45706 1.65357 1.15981 1.08922 1.21407 1.00306 0.97644 0.79287 1.22617 0.98915 0.97362 0.93924 0.89093 1.21613 0.91296 0.95495 0.90149 1.44354 1.26703 1.50920 1.10937 1.19073 0.99144 1.15203 1.02504 0.90189 1.24832 0.98637 0.99932 0.96863 1.69939 1.33774 1.43673 1.09406 0.86094 0.80452 0.81803 0.77387 1.21525 1.21735 1.20556 1.21877 0.88065 0.95669 0.91873 1.23109 0.81531 0.98128 0.94856 0.92545 1.86425 1.24635 1.90902 1.35185 0.90484 0.91273 0.92296 0.89085 0.87175 0.80661 0.82752 0.75957 0.91113 0.91029 0.95931 0.93829 0.93669 0.92091 0.93918 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.22 37.16 0.38 -0.88 16 2 C 0.10 0.78 6.13 -4.04 -0.02 0.75 16 3 N -0.40 -3.99 2.76 -112.83 -0.31 -4.30 16 4 C 0.03 0.27 11.35 -16.84 -0.19 0.08 16 5 C -0.12 -1.26 6.66 -39.94 -0.27 -1.52 16 6 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.02 16 7 C -0.13 -1.41 10.35 -39.09 -0.40 -1.81 16 8 C -0.03 -0.37 6.88 -81.98 -0.56 -0.94 16 9 C 0.59 7.94 7.77 -12.86 -0.10 7.84 16 10 O -0.55 -8.55 14.47 5.19 0.08 -8.47 16 11 N -0.71 -9.13 5.39 -61.63 -0.33 -9.46 16 12 C 0.14 1.96 5.13 -4.05 -0.02 1.94 16 13 C -0.11 -1.81 2.83 -88.47 -0.25 -2.06 16 14 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 15 C 0.14 2.73 6.40 -2.53 -0.02 2.71 16 16 N -0.60 -14.86 3.40 -169.86 -0.58 -15.44 16 17 C -0.23 -6.30 10.27 -15.06 -0.15 -6.45 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.50 10.37 55.49 0.58 -25.92 16 21 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.15 3.51 5.17 -2.92 -0.02 3.50 16 26 C 0.08 1.52 3.80 -24.90 -0.09 1.42 16 27 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 28 O -0.57 -9.57 13.39 -35.23 -0.47 -10.04 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.07 0.71 7.81 -51.93 -0.41 0.31 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.11 1.08 6.63 -51.92 -0.34 0.73 16 34 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.15 1.49 7.45 -52.49 -0.39 1.10 16 36 H 0.41 4.62 7.24 -40.82 -0.30 4.33 16 37 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.61 7.18 -51.93 -0.37 1.24 16 43 H 0.04 1.09 7.65 -51.93 -0.40 0.69 16 44 H 0.38 4.91 9.12 45.56 0.42 5.32 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -32.67 378.65 -9.25 -41.92 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.55 Total: 6.98 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.82 Total: 4.31 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.65 Total: -55.13 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.40 Total: -18.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.67 -9.25 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.317 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds