Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46968 * 2 1 4 4 C 1.35631 * 125.67760 * 263.16612 * 3 2 1 5 5 C 1.35516 * 108.85332 * 180.24279 * 4 3 2 6 6 Cl 1.73601 * 126.07197 * 179.78513 * 5 4 3 7 7 C 1.39890 * 107.85226 * 359.75398 * 5 4 3 8 8 C 1.37643 * 125.68028 * 82.98209 * 3 2 1 9 9 C 1.46667 * 126.21720 * 0.02562 * 8 3 2 10 10 O 1.21699 * 120.00123 * 4.75172 * 9 8 3 11 11 N 1.34781 * 119.99915 * 184.74771 * 9 8 3 12 12 C 1.46494 * 120.00132 * 175.03784 * 11 9 8 13 13 C 1.52998 * 109.47035 * 179.97438 * 12 11 9 14 14 H 1.08995 * 110.88573 * 57.43163 * 13 12 11 15 15 C 1.54905 * 111.00753 * 293.54520 * 13 12 11 16 16 N 1.47424 * 104.93177 * 204.85954 * 15 13 12 17 17 C 1.36936 * 125.65180 * 204.15642 * 16 15 13 18 18 H 1.08005 * 119.99592 * 354.95224 * 17 16 15 19 19 C 1.38815 * 120.00102 * 174.95476 * 17 16 15 20 20 N 1.31609 * 120.00073 * 5.56431 * 19 17 16 21 21 Si 1.86798 * 119.99831 * 185.56400 * 19 17 16 22 22 H 1.48499 * 109.47330 * 94.99365 * 21 19 17 23 23 H 1.48503 * 109.47254 * 214.99480 * 21 19 17 24 24 H 1.48505 * 109.47253 * 334.99703 * 21 19 17 25 25 C 1.47286 * 108.55566 * 24.15893 * 16 15 13 26 26 C 1.54318 * 107.30845 * 358.92254 * 25 16 15 27 27 H 1.08999 * 110.87494 * 96.25326 * 26 25 16 28 28 O 1.42907 * 110.72230 * 219.45735 * 26 25 16 29 29 H 1.09008 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47228 * 300.00007 * 1 2 3 31 31 H 1.09003 * 109.47247 * 60.00720 * 1 2 3 32 32 H 1.09002 * 109.47416 * 239.99604 * 2 1 3 33 33 H 1.09008 * 109.47451 * 119.99699 * 2 1 3 34 34 H 1.08006 * 125.57144 * 359.97438 * 4 3 2 35 35 H 1.08002 * 126.45186 * 180.02562 * 7 5 4 36 36 H 0.96997 * 119.99313 * 355.03449 * 11 9 8 37 37 H 1.09001 * 109.47297 * 60.00233 * 12 11 9 38 38 H 1.09000 * 109.47448 * 300.00144 * 12 11 9 39 39 H 1.09003 * 110.37037 * 323.75693 * 15 13 12 40 40 H 1.08998 * 110.36781 * 85.96618 * 15 13 12 41 41 H 0.97002 * 120.00298 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.85436 * 239.49717 * 25 16 15 43 43 H 1.09000 * 110.00359 * 118.43299 * 25 16 15 44 44 H 0.96705 * 113.99579 * 293.52188 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4055 2.0833 -1.0939 5 6 2.7989 3.3200 -0.7038 6 17 3.3849 4.5814 -1.7428 7 6 2.6484 3.3999 0.6846 8 6 2.1570 2.1837 1.1097 9 6 1.8451 1.8106 2.4934 10 8 1.5024 0.6723 2.7542 11 7 1.9379 2.7284 3.4760 12 6 1.5227 2.3869 4.8388 13 6 1.7296 3.5962 5.7530 14 1 1.1770 4.4606 5.3849 15 6 3.2356 3.9244 5.9075 16 7 3.3401 4.6300 7.1977 17 6 4.3342 5.5027 7.5518 18 1 5.1739 5.6614 6.8914 19 6 4.2626 6.1833 8.7596 20 7 3.2986 5.9100 9.6128 21 14 5.5346 7.4871 9.1737 22 1 5.0136 8.8250 8.7947 23 1 5.8147 7.4599 10.6318 24 1 6.7867 7.2129 8.4239 25 6 2.1971 4.2386 8.0400 26 6 1.3320 3.2625 7.2152 27 1 1.5776 2.2280 7.4551 28 8 -0.0583 3.5131 7.4308 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.4049 1.7153 -2.1093 35 1 2.8740 4.2536 1.3065 36 1 2.2797 3.6149 3.2808 37 1 2.1205 1.5509 5.2021 38 1 0.4692 2.1073 4.8384 39 1 3.8237 3.0069 5.9282 40 1 3.5686 4.5693 5.0944 41 1 3.2487 6.3852 10.4569 42 1 1.6125 5.1201 8.3036 43 1 2.5522 3.7454 8.9448 44 1 -0.3579 3.3203 8.3298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958676860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -42.442849 kcal Electronic energy + Delta-G solvation = -27308.122661 eV Core-core repulsion = 23286.937007 eV Total energy + Delta-G solvation = -4021.185654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55988 -40.50644 -39.55595 -37.37119 -36.64518 -36.19688 -34.97829 -33.98241 -31.81516 -30.37678 -30.13877 -29.16275 -27.22691 -25.40912 -24.57270 -23.36112 -22.19944 -21.64490 -21.49485 -20.51989 -19.11107 -18.75012 -18.18463 -17.19457 -17.13419 -16.66157 -16.49687 -16.06097 -15.69359 -15.68864 -15.40094 -15.09303 -14.88281 -14.59217 -14.41191 -14.14824 -13.97303 -13.78009 -13.67742 -13.60009 -13.18578 -13.11061 -12.97571 -12.73596 -12.45570 -12.35572 -12.27466 -12.18003 -11.91188 -11.83198 -11.79178 -11.48306 -11.07948 -10.81399 -10.72255 -10.20057 -9.72567 -9.24282 -8.92726 -7.87329 -5.22608 0.33463 1.14434 1.44069 1.46994 1.48532 1.57211 1.70630 2.24995 2.37824 2.48382 3.24065 3.32837 3.57421 3.60388 3.75868 3.82170 3.89350 3.97323 4.10607 4.15175 4.21167 4.39861 4.40747 4.45783 4.47412 4.60591 4.72511 4.76719 4.84920 4.87822 4.95536 4.97361 5.17402 5.25999 5.33678 5.39606 5.43862 5.51223 5.71469 5.73516 6.07425 6.16556 6.44809 6.89317 7.06956 7.08858 7.73872 8.37966 9.23378 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002685 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.282100 B =10427.410138 C =12299.285400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 N -0.401 5.401 4 C 0.051 3.949 5 C -0.142 4.142 6 Cl -0.049 7.049 7 C -0.128 4.128 8 C -0.058 4.058 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.152 3.848 13 C -0.090 4.090 14 H 0.086 0.914 15 C 0.139 3.861 16 N -0.625 5.625 17 C -0.243 4.243 18 H 0.087 0.913 19 C -0.065 4.065 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.159 3.841 26 C 0.098 3.902 27 H 0.077 0.923 28 O -0.569 6.569 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.211 0.789 35 H 0.161 0.839 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.247 0.753 42 H 0.023 0.977 43 H 0.010 0.990 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -11.163 -23.055 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.074 5.074 4 C -0.087 4.087 5 C -0.175 4.175 6 Cl -0.021 7.021 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.377 3.623 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.028 3.972 13 C -0.110 4.110 14 H 0.104 0.896 15 C 0.014 3.986 16 N -0.352 5.352 17 C -0.372 4.372 18 H 0.104 0.896 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.033 3.967 26 C 0.038 3.962 27 H 0.095 0.905 28 O -0.377 6.377 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.228 0.772 35 H 0.178 0.822 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.387 -11.945 -23.350 26.775 hybrid contribution 0.838 1.380 1.396 2.135 sum -4.549 -10.565 -21.954 24.785 Atomic orbital electron populations 1.22035 0.93538 1.04035 1.01942 1.22286 0.96329 0.77909 1.06064 1.44238 1.45984 1.12358 1.04820 1.22253 1.02218 0.90872 0.93348 1.20028 1.13476 0.92383 0.91598 1.98331 1.87462 1.50483 1.65786 1.21462 1.03011 0.96825 0.94201 1.19854 1.15983 0.93023 0.88336 1.17057 0.76969 0.84499 0.83812 1.90772 1.50144 1.20297 1.84320 1.45595 1.65400 1.16388 1.08323 1.21125 1.00404 0.96074 0.79557 1.22410 0.96741 0.98210 0.93624 0.89555 1.21774 0.93246 0.95325 0.88264 1.44658 1.26439 1.51003 1.13108 1.19480 0.99884 1.15279 1.02508 0.89567 1.25663 1.00862 1.02179 0.97100 1.70153 1.35563 1.44636 1.09507 0.85077 0.78670 0.79009 0.76691 1.21471 1.22264 1.19085 1.21655 0.88109 0.95027 0.91894 1.22872 0.81246 0.97479 0.94607 0.90527 1.86395 1.23479 1.90972 1.36814 0.88871 0.94388 0.91229 0.85472 0.89180 0.77203 0.82156 0.75108 0.91251 0.90868 0.95249 0.92558 0.94381 0.95925 0.97142 0.75730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.22 71.98 0.74 -1.42 16 2 C 0.09 1.31 6.13 86.38 0.53 1.84 16 3 N -0.40 -7.17 2.76 -510.87 -1.41 -8.58 16 4 C 0.05 0.75 11.35 83.48 0.95 1.70 16 5 C -0.14 -2.64 6.66 22.04 0.15 -2.49 16 6 Cl -0.05 -0.87 29.30 -2.72 -0.08 -0.95 16 7 C -0.13 -2.63 10.35 22.59 0.23 -2.40 16 8 C -0.06 -1.31 6.88 40.35 0.28 -1.03 16 9 C 0.59 15.45 7.77 86.44 0.67 16.12 16 10 O -0.57 -17.65 14.47 -4.34 -0.06 -17.71 16 11 N -0.71 -17.43 5.39 -467.10 -2.52 -19.95 16 12 C 0.15 4.17 5.13 86.38 0.44 4.61 16 13 C -0.09 -2.93 2.83 -9.40 -0.03 -2.95 16 14 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 15 C 0.14 5.27 6.40 86.85 0.56 5.83 16 16 N -0.62 -31.21 3.40 -691.32 -2.35 -33.56 16 17 C -0.24 -13.33 10.27 84.03 0.86 -12.47 16 18 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.06 -3.65 5.48 84.86 0.47 -3.19 16 20 N -0.95 -56.47 10.37 21.65 0.22 -56.25 16 21 Si 0.98 45.28 29.56 68.60 2.03 47.31 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.16 7.63 5.17 86.68 0.45 8.08 16 26 C 0.10 3.51 3.80 31.78 0.12 3.63 16 27 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 28 O -0.57 -18.74 13.39 -148.98 -1.99 -20.74 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 0.76 7.81 -2.39 -0.02 0.74 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 0.84 8.12 -2.39 -0.02 0.82 16 33 H 0.09 1.67 6.63 -2.38 -0.02 1.65 16 34 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.16 2.91 7.45 -2.91 -0.02 2.89 16 36 H 0.41 8.93 7.24 -92.71 -0.67 8.26 16 37 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.03 1.10 8.00 -2.39 -0.02 1.09 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.02 1.24 7.18 -2.38 -0.02 1.23 16 43 H 0.01 0.56 7.65 -2.39 -0.02 0.54 16 44 H 0.39 9.95 9.12 -74.05 -0.68 9.27 16 Total: -1.00 -72.09 378.65 -0.06 -72.16 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.31 Total: 22.42 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.41 Total: 15.85 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.06 Total: -118.33 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -2.06 Total: -38.45 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -72.09 -0.06 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958676860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.716 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds