Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46941 * 2 1 4 4 C 1.34768 * 120.00172 * 84.31359 * 3 2 1 5 5 O 1.21580 * 120.00221 * 174.92126 * 4 3 2 6 6 C 1.47519 * 119.99983 * 355.20263 * 4 3 2 7 7 C 1.36790 * 126.92858 * 180.44270 * 6 4 3 8 8 C 1.41412 * 103.83653 * 179.97438 * 7 6 4 9 9 Cl 1.73602 * 126.72236 * 180.11380 * 8 7 6 10 10 N 1.30224 * 106.55134 * 0.33839 * 8 7 6 11 11 O 1.20890 * 111.95833 * 359.77804 * 10 8 7 12 12 C 1.46502 * 119.99779 * 264.30970 * 3 2 1 13 13 H 1.09005 * 109.49076 * 0.05220 * 12 3 2 14 14 C 1.52563 * 109.49265 * 240.00575 * 12 3 2 15 15 C 1.47097 * 114.33046 * 155.02283 * 14 12 3 16 16 C 1.54863 * 110.31911 * 62.79767 * 15 14 12 17 17 N 1.44570 * 109.60477 * 288.73597 * 16 15 14 18 18 C 1.36932 * 118.64254 * 270.73052 * 17 16 15 19 19 H 1.08002 * 120.00549 * 30.76625 * 18 17 16 20 20 C 1.38821 * 119.99807 * 210.77058 * 18 17 16 21 21 N 1.31613 * 120.00052 * 11.11862 * 20 18 17 22 22 Si 1.86801 * 119.99907 * 191.12282 * 20 18 17 23 23 H 1.48497 * 109.47285 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46971 * 119.99663 * 22 20 18 25 25 H 1.48498 * 109.47296 * 239.99603 * 22 20 18 26 26 C 1.47602 * 122.71235 * 90.74764 * 17 16 15 27 27 C 1.50882 * 109.48727 * 120.11664 * 12 3 2 28 28 H 1.09004 * 109.47535 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47110 * 300.00014 * 1 2 3 31 31 H 1.09003 * 109.46717 * 239.99617 * 2 1 3 32 32 H 1.09000 * 109.46832 * 119.99828 * 2 1 3 33 33 H 1.08004 * 128.08077 * 0.02562 * 7 6 4 34 34 H 1.09004 * 108.50910 * 276.27424 * 14 12 3 35 35 H 1.08998 * 108.51512 * 33.76404 * 14 12 3 36 36 H 1.08991 * 109.32839 * 183.06434 * 15 14 12 37 37 H 1.08994 * 109.32320 * 302.53910 * 15 14 12 38 38 H 1.08996 * 109.44762 * 48.78033 * 16 15 14 39 39 H 1.09003 * 109.44320 * 168.69290 * 16 15 14 40 40 H 0.97001 * 120.00267 * 180.02562 * 21 20 18 41 41 H 1.09005 * 108.94614 * 78.53558 * 26 17 16 42 42 H 1.09004 * 108.94886 * 197.15957 * 26 17 16 43 43 H 1.09002 * 109.36726 * 332.04466 * 27 12 3 44 44 H 1.09001 * 109.36423 * 91.66478 * 27 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1339 2.0551 1.1614 5 8 2.6252 3.1672 1.1727 6 6 1.6699 1.4410 2.4198 7 6 1.7106 1.9963 3.6693 8 6 1.1493 0.9997 4.5008 9 17 0.9134 1.0926 6.2182 10 7 0.8484 -0.0032 3.7265 11 8 1.1274 0.2180 2.5712 12 6 2.3810 2.0299 -1.2625 13 1 2.2216 1.3352 -2.0873 14 6 3.8496 2.4411 -1.2200 15 6 4.4849 2.5570 -2.5416 16 6 3.7991 3.6697 -3.3723 17 7 2.4815 3.2320 -3.7750 18 6 2.3479 2.5537 -4.9570 19 1 3.1543 1.9318 -5.3170 20 6 1.1760 2.6653 -5.6928 21 7 0.2856 3.5817 -5.3771 22 14 0.8628 1.5148 -7.1307 23 1 2.0092 0.5825 -7.2776 24 1 -0.3786 0.7384 -6.8821 25 1 0.7087 2.3092 -8.3758 26 6 1.2742 3.4864 -2.9649 27 6 1.5240 3.2554 -1.4632 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0836 2.9691 3.9540 34 1 3.9249 3.4038 -0.7142 35 1 4.3989 1.7032 -0.6355 36 1 5.5399 2.7998 -2.4147 37 1 4.3969 1.6071 -3.0687 38 1 3.7127 4.5726 -2.7680 39 1 4.3976 3.8822 -4.2582 40 1 -0.5335 3.6595 -5.8909 41 1 0.9571 4.5182 -3.1166 42 1 0.4778 2.8207 -3.2977 43 1 0.5697 3.1163 -0.9551 44 1 2.0316 4.1240 -1.0437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998182907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = 56.554325 kcal Electronic energy + Delta-G solvation = -28934.716918 eV Core-core repulsion = 24917.824104 eV Total energy + Delta-G solvation = -4016.892814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.50425 -40.33335 -37.56389 -37.50167 -35.96984 -34.01377 -33.62093 -32.36634 -31.46403 -30.76599 -29.67043 -26.21895 -25.00563 -24.02143 -23.87436 -23.16383 -22.85874 -20.98193 -19.91428 -19.31573 -18.31306 -17.60367 -16.75269 -16.68454 -16.14384 -15.36021 -15.24071 -14.75128 -14.39603 -14.32161 -14.10939 -13.78931 -13.58772 -13.21092 -13.12365 -12.96642 -12.83045 -12.74582 -12.30887 -12.04579 -11.90806 -11.51222 -11.42370 -11.15028 -11.10962 -10.91967 -10.88301 -10.46989 -10.40333 -10.30341 -10.16117 -10.07475 -9.92543 -9.76698 -9.67173 -9.53780 -8.60988 -8.42375 -6.60210 -5.78641 -3.27900 0.44442 1.05533 1.45041 2.28216 2.85923 2.99245 3.34381 3.43139 3.44346 3.82896 4.34372 4.38909 4.48181 4.65651 4.91824 5.16121 5.25742 5.31907 5.33861 5.37585 5.50738 5.54425 5.71146 5.78288 5.89479 5.97606 6.09181 6.21267 6.25832 6.37636 6.46507 6.54033 6.60966 6.67319 6.79348 6.89776 6.96078 7.08659 7.30779 7.42313 7.50798 7.70521 7.81979 7.96143 8.49430 9.24769 9.90209 10.37868 11.28299 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.002893 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434371 B = 9677.377614 C =10265.122832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.589 5.589 4 C 0.597 3.403 5 O -0.499 6.499 6 C -0.058 4.058 7 C -0.145 4.145 8 C 0.052 3.948 9 Cl 0.029 6.971 10 N -0.335 5.335 11 O 0.139 5.861 12 C 0.164 3.836 13 H 0.106 0.894 14 C -0.111 4.111 15 C -0.143 4.143 16 C 0.156 3.844 17 N -0.592 5.592 18 C -0.259 4.259 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.903 5.903 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.184 3.816 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.193 0.807 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.253 0.747 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -6.306 18.191 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.321 5.321 4 C 0.380 3.620 5 O -0.374 6.374 6 C -0.124 4.124 7 C -0.168 4.168 8 C -0.131 4.131 9 Cl 0.057 6.943 10 N -0.037 5.037 11 O 0.064 5.936 12 C 0.063 3.937 13 H 0.124 0.876 14 C -0.149 4.149 15 C -0.184 4.184 16 C 0.028 3.972 17 N -0.314 5.314 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.059 3.941 27 C -0.188 4.188 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.210 0.790 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.703 -6.830 18.493 19.788 hybrid contribution -0.140 0.023 -0.301 0.333 sum 1.563 -6.807 18.193 19.487 Atomic orbital electron populations 1.22214 0.95156 1.02668 1.02702 1.21829 0.95279 0.81835 1.03602 1.48457 1.62870 1.14120 1.06639 1.16563 0.79642 0.85022 0.80758 1.90876 1.43600 1.18255 1.84679 1.24540 1.02943 0.86917 0.97963 1.22734 1.02468 1.02093 0.89517 1.24035 1.05153 0.93232 0.90673 1.98422 1.95623 1.97713 1.02581 1.73833 1.17124 1.22317 0.90389 1.85281 1.57621 1.30220 1.20501 1.20804 0.94892 0.96006 0.82005 0.87614 1.20662 0.94143 1.01805 0.98282 1.21439 0.98165 1.02438 0.96315 1.20720 0.87362 0.93120 0.96017 1.43656 1.01343 1.65487 1.20901 1.19218 1.01558 1.20772 0.97362 0.91808 1.25163 0.98847 0.97457 0.97687 1.70033 1.10268 1.33055 1.41375 0.86275 0.77805 0.80425 0.82560 1.20260 1.21642 1.21723 1.20945 0.89226 0.99876 0.84089 1.22463 0.98360 0.96803 1.01190 0.91315 0.91163 0.92935 0.88884 0.90337 0.78956 0.91378 0.94005 0.93154 0.92281 0.94864 0.93644 0.93716 0.95321 0.91068 0.92826 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.65 37.16 0.36 -1.49 16 2 C 0.10 1.09 5.69 -4.04 -0.02 1.06 16 3 N -0.59 -8.19 2.27 -168.81 -0.38 -8.57 16 4 C 0.60 8.51 7.03 -12.48 -0.09 8.42 16 5 O -0.50 -8.34 14.13 5.29 0.07 -8.27 16 6 C -0.06 -0.70 6.54 -36.32 -0.24 -0.94 16 7 C -0.14 -1.55 10.96 -38.90 -0.43 -1.98 16 8 C 0.05 0.56 7.97 -17.03 -0.14 0.43 16 9 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 10 N -0.33 -3.98 12.05 32.82 0.40 -3.58 16 11 O 0.14 1.60 6.51 15.55 0.10 1.70 16 12 C 0.16 2.71 2.17 -69.22 -0.15 2.56 16 13 H 0.11 1.92 7.07 -51.93 -0.37 1.55 16 14 C -0.11 -1.82 3.89 -29.79 -0.12 -1.93 16 15 C -0.14 -2.44 5.74 -28.58 -0.16 -2.61 16 16 C 0.16 3.16 5.65 -4.09 -0.02 3.13 16 17 N -0.59 -13.88 2.26 -172.07 -0.39 -14.27 16 18 C -0.26 -6.68 9.41 -15.06 -0.14 -6.82 16 19 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 20 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 21 N -0.90 -25.25 11.03 55.49 0.61 -24.64 16 22 Si 0.90 20.90 29.57 -169.99 -5.03 15.87 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.18 4.19 4.65 -2.93 -0.01 4.17 16 27 C -0.15 -2.76 4.37 -27.28 -0.12 -2.88 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.59 6.52 -51.93 -0.34 0.25 16 31 H 0.09 0.98 7.80 -51.93 -0.41 0.57 16 32 H 0.08 0.78 5.80 -51.93 -0.30 0.47 16 33 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.07 1.20 6.22 -51.93 -0.32 0.88 16 35 H 0.04 0.64 8.04 -51.93 -0.42 0.23 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 39 H 0.05 0.94 7.99 -51.93 -0.41 0.52 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 42 H 0.07 1.78 6.52 -51.93 -0.34 1.45 16 43 H 0.05 0.97 7.97 -51.93 -0.41 0.55 16 44 H 0.06 1.19 6.76 -51.93 -0.35 0.84 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -28.31 360.67 -8.23 -36.54 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.16 Total: -0.18 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.37 Total: 1.23 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.24 Total: -51.06 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: 0.18 Total: -6.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.31 -8.23 -36.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998182907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.095 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds