Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46941 * 2 1 4 4 C 1.34768 * 120.00172 * 84.31359 * 3 2 1 5 5 O 1.21580 * 120.00221 * 174.92126 * 4 3 2 6 6 C 1.47519 * 119.99983 * 355.20263 * 4 3 2 7 7 C 1.36790 * 126.92858 * 180.44270 * 6 4 3 8 8 C 1.41412 * 103.83653 * 179.97438 * 7 6 4 9 9 Cl 1.73602 * 126.72236 * 180.11380 * 8 7 6 10 10 N 1.30224 * 106.55134 * 0.33839 * 8 7 6 11 11 O 1.20890 * 111.95833 * 359.77804 * 10 8 7 12 12 C 1.46502 * 119.99779 * 264.30970 * 3 2 1 13 13 H 1.09005 * 109.49076 * 0.05220 * 12 3 2 14 14 C 1.52563 * 109.49265 * 240.00575 * 12 3 2 15 15 C 1.47097 * 114.33046 * 155.02283 * 14 12 3 16 16 C 1.54863 * 110.31911 * 62.79767 * 15 14 12 17 17 N 1.44570 * 109.60477 * 288.73597 * 16 15 14 18 18 C 1.36932 * 118.64254 * 270.73052 * 17 16 15 19 19 H 1.08002 * 120.00549 * 30.76625 * 18 17 16 20 20 C 1.38821 * 119.99807 * 210.77058 * 18 17 16 21 21 N 1.31613 * 120.00052 * 11.11862 * 20 18 17 22 22 Si 1.86801 * 119.99907 * 191.12282 * 20 18 17 23 23 H 1.48497 * 109.47285 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46971 * 119.99663 * 22 20 18 25 25 H 1.48498 * 109.47296 * 239.99603 * 22 20 18 26 26 C 1.47602 * 122.71235 * 90.74764 * 17 16 15 27 27 C 1.50882 * 109.48727 * 120.11664 * 12 3 2 28 28 H 1.09004 * 109.47535 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47110 * 300.00014 * 1 2 3 31 31 H 1.09003 * 109.46717 * 239.99617 * 2 1 3 32 32 H 1.09000 * 109.46832 * 119.99828 * 2 1 3 33 33 H 1.08004 * 128.08077 * 0.02562 * 7 6 4 34 34 H 1.09004 * 108.50910 * 276.27424 * 14 12 3 35 35 H 1.08998 * 108.51512 * 33.76404 * 14 12 3 36 36 H 1.08991 * 109.32839 * 183.06434 * 15 14 12 37 37 H 1.08994 * 109.32320 * 302.53910 * 15 14 12 38 38 H 1.08996 * 109.44762 * 48.78033 * 16 15 14 39 39 H 1.09003 * 109.44320 * 168.69290 * 16 15 14 40 40 H 0.97001 * 120.00267 * 180.02562 * 21 20 18 41 41 H 1.09005 * 108.94614 * 78.53558 * 26 17 16 42 42 H 1.09004 * 108.94886 * 197.15957 * 26 17 16 43 43 H 1.09002 * 109.36726 * 332.04466 * 27 12 3 44 44 H 1.09001 * 109.36423 * 91.66478 * 27 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1339 2.0551 1.1614 5 8 2.6252 3.1672 1.1727 6 6 1.6699 1.4410 2.4198 7 6 1.7106 1.9963 3.6693 8 6 1.1493 0.9997 4.5008 9 17 0.9134 1.0926 6.2182 10 7 0.8484 -0.0032 3.7265 11 8 1.1274 0.2180 2.5712 12 6 2.3810 2.0299 -1.2625 13 1 2.2216 1.3352 -2.0873 14 6 3.8496 2.4411 -1.2200 15 6 4.4849 2.5570 -2.5416 16 6 3.7991 3.6697 -3.3723 17 7 2.4815 3.2320 -3.7750 18 6 2.3479 2.5537 -4.9570 19 1 3.1543 1.9318 -5.3170 20 6 1.1760 2.6653 -5.6928 21 7 0.2856 3.5817 -5.3771 22 14 0.8628 1.5148 -7.1307 23 1 2.0092 0.5825 -7.2776 24 1 -0.3786 0.7384 -6.8821 25 1 0.7087 2.3092 -8.3758 26 6 1.2742 3.4864 -2.9649 27 6 1.5240 3.2554 -1.4632 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0836 2.9691 3.9540 34 1 3.9249 3.4038 -0.7142 35 1 4.3989 1.7032 -0.6355 36 1 5.5399 2.7998 -2.4147 37 1 4.3969 1.6071 -3.0687 38 1 3.7127 4.5726 -2.7680 39 1 4.3976 3.8822 -4.2582 40 1 -0.5335 3.6595 -5.8909 41 1 0.9571 4.5182 -3.1166 42 1 0.4778 2.8207 -3.2977 43 1 0.5697 3.1163 -0.9551 44 1 2.0316 4.1240 -1.0437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998182907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = 42.318409 kcal Electronic energy + Delta-G solvation = -28935.334234 eV Core-core repulsion = 24917.824104 eV Total energy + Delta-G solvation = -4017.510130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.38833 -41.54311 -39.05733 -38.27798 -37.19623 -35.25124 -34.87557 -33.60409 -32.75052 -32.51587 -30.87739 -27.87927 -26.37454 -25.34146 -24.85616 -24.75526 -23.86381 -22.14105 -21.25514 -20.93260 -19.22208 -18.67241 -18.50164 -17.64087 -17.48868 -16.88087 -16.32578 -16.20986 -15.79550 -15.60255 -15.35007 -15.13976 -14.83300 -14.61113 -14.29163 -14.05438 -13.91522 -13.85634 -13.63794 -13.55253 -13.08185 -12.96485 -12.83691 -12.74136 -12.45940 -12.23280 -12.15582 -12.06045 -11.95908 -11.76894 -11.55286 -11.32716 -11.27103 -11.22044 -11.08052 -10.99284 -10.42775 -9.79008 -8.54877 -7.80021 -5.31938 -0.49362 0.25762 0.59284 1.28321 1.49174 1.52196 1.61402 1.78693 1.95609 2.55613 2.92134 3.34863 3.42156 3.49723 3.71745 3.76839 3.88284 4.00906 4.08734 4.30452 4.39207 4.46544 4.50348 4.51851 4.53736 4.72501 4.77175 4.90559 4.92466 5.00351 5.07019 5.15267 5.25323 5.25973 5.33350 5.36701 5.50414 5.57286 5.65782 5.74820 5.79315 6.21102 6.48645 6.58754 6.85366 7.24673 7.98692 8.41386 9.25071 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.002893 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434371 B = 9677.377614 C =10265.122832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.589 5.589 4 C 0.599 3.401 5 O -0.527 6.527 6 C -0.069 4.069 7 C -0.131 4.131 8 C 0.050 3.950 9 Cl 0.046 6.954 10 N -0.344 5.344 11 O 0.143 5.857 12 C 0.174 3.826 13 H 0.093 0.907 14 C -0.104 4.104 15 C -0.128 4.128 16 C 0.150 3.850 17 N -0.603 5.603 18 C -0.258 4.258 19 H 0.068 0.932 20 C -0.046 4.046 21 N -0.937 5.937 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.291 1.291 25 H -0.298 1.298 26 C 0.200 3.800 27 C -0.129 4.129 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.247 0.753 41 H -0.008 1.008 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -7.985 19.723 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.384 3.616 5 O -0.405 6.405 6 C -0.134 4.134 7 C -0.154 4.154 8 C -0.133 4.133 9 Cl 0.074 6.926 10 N -0.046 5.046 11 O 0.067 5.933 12 C 0.072 3.928 13 H 0.111 0.889 14 C -0.142 4.142 15 C -0.168 4.168 16 C 0.024 3.976 17 N -0.326 5.326 18 C -0.389 4.389 19 H 0.085 0.915 20 C -0.241 4.241 21 N -0.583 5.583 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.218 1.218 25 H -0.225 1.225 26 C 0.074 3.926 27 C -0.169 4.169 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.227 0.773 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.010 0.990 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.751 -8.540 20.053 21.969 hybrid contribution -0.449 0.579 -0.693 1.008 sum 2.302 -7.961 19.361 21.060 Atomic orbital electron populations 1.22173 0.95018 1.03678 1.01415 1.22032 0.95335 0.80377 1.04931 1.48395 1.62870 1.15084 1.05669 1.16695 0.79013 0.84638 0.81263 1.90863 1.44885 1.19424 1.85284 1.24117 1.04337 0.87605 0.97369 1.22991 1.01074 1.02489 0.88873 1.24181 1.04690 0.92873 0.91535 1.98433 1.95485 1.97637 1.01067 1.73815 1.17378 1.22799 0.90589 1.85266 1.57634 1.29889 1.20475 1.20452 0.94691 0.94638 0.83042 0.88944 1.20572 0.93954 1.01790 0.97886 1.21260 0.99270 1.00504 0.95768 1.20877 0.86026 0.94425 0.96310 1.43837 1.02483 1.65567 1.20704 1.19502 1.01383 1.20244 0.97765 0.91458 1.25862 0.98986 0.98989 1.00266 1.70201 1.10592 1.34892 1.42600 0.85290 0.77777 0.78640 0.79238 1.18857 1.21787 1.22504 1.20608 0.88520 0.96858 0.86611 1.22183 0.99024 0.97894 0.97761 0.93414 0.89036 0.93320 0.88022 0.88490 0.77279 0.92348 0.92207 0.90545 0.92805 0.94937 0.94238 0.94344 0.99014 0.93827 0.92513 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.65 71.98 0.69 -2.69 16 2 C 0.09 1.94 5.69 86.38 0.49 2.43 16 3 N -0.59 -15.62 2.27 -806.26 -1.83 -17.45 16 4 C 0.60 16.23 7.03 86.69 0.61 16.84 16 5 O -0.53 -17.06 14.13 -3.97 -0.06 -17.11 16 6 C -0.07 -1.53 6.54 24.38 0.16 -1.37 16 7 C -0.13 -2.53 10.96 22.71 0.25 -2.28 16 8 C 0.05 0.97 7.97 85.71 0.68 1.65 16 9 Cl 0.05 0.72 29.33 -2.72 -0.08 0.64 16 10 N -0.34 -7.43 12.05 -51.02 -0.61 -8.04 16 11 O 0.14 2.99 6.51 65.81 0.43 3.42 16 12 C 0.17 5.63 2.17 44.16 0.10 5.73 16 13 H 0.09 3.30 7.07 -2.38 -0.02 3.29 16 14 C -0.10 -3.24 3.89 28.61 0.11 -3.13 16 15 C -0.13 -4.15 5.74 29.39 0.17 -3.98 16 16 C 0.15 6.06 5.65 87.38 0.49 6.55 16 17 N -0.60 -28.76 2.26 -698.32 -1.58 -30.34 16 18 C -0.26 -13.43 9.41 84.04 0.79 -12.64 16 19 H 0.07 3.41 7.85 -2.91 -0.02 3.39 16 20 C -0.05 -2.46 4.96 84.87 0.42 -2.03 16 21 N -0.94 -54.12 11.03 21.65 0.24 -53.88 16 22 Si 0.96 43.40 29.57 68.60 2.03 45.43 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.20 9.45 4.65 86.50 0.40 9.85 16 27 C -0.13 -4.88 4.37 30.24 0.13 -4.75 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.03 6.52 -2.39 -0.02 1.02 16 31 H 0.10 1.93 7.80 -2.39 -0.02 1.91 16 32 H 0.10 1.67 5.80 -2.39 -0.01 1.65 16 33 H 0.21 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.06 1.98 6.22 -2.38 -0.01 1.96 16 35 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H -0.01 -0.44 7.99 -2.38 -0.02 -0.46 16 42 H 0.04 2.28 6.52 -2.38 -0.02 2.27 16 43 H 0.06 2.08 7.97 -2.39 -0.02 2.07 16 44 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16 Total: -1.00 -61.47 360.67 5.06 -56.41 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.02 Total: 10.73 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.50 Total: 10.19 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.78 Total: -109.71 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.37 Total: -13.69 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -61.47 5.06 -56.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998182907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.731 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds