Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47298 * 2 1 4 4 C 1.34782 * 120.00098 * 273.14113 * 3 2 1 5 5 O 1.21579 * 120.00213 * 185.21222 * 4 3 2 6 6 C 1.47525 * 119.99620 * 5.20959 * 4 3 2 7 7 C 1.36780 * 126.92603 * 185.49501 * 6 4 3 8 8 C 1.41412 * 103.83792 * 179.87942 * 7 6 4 9 9 Cl 1.73600 * 126.72640 * 180.13786 * 8 7 6 10 10 N 1.30235 * 106.54687 * 0.38860 * 8 7 6 11 11 O 1.20882 * 111.95690 * 359.74686 * 10 8 7 12 12 C 1.46497 * 120.00144 * 93.14326 * 3 2 1 13 13 H 1.09003 * 110.21689 * 359.97438 * 12 3 2 14 14 C 1.50126 * 110.25153 * 121.93508 * 12 3 2 15 15 C 1.54635 * 110.92859 * 216.54229 * 14 12 3 16 16 C 1.54899 * 110.19055 * 321.33906 * 15 14 12 17 17 N 1.43436 * 116.07673 * 318.52648 * 16 15 14 18 18 C 1.36944 * 120.53835 * 271.58763 * 17 16 15 19 19 H 1.08001 * 119.99948 * 332.48704 * 18 17 16 20 20 C 1.38804 * 119.99998 * 152.48120 * 18 17 16 21 21 N 1.31621 * 120.00207 * 349.13797 * 20 18 17 22 22 Si 1.86802 * 120.00157 * 169.13732 * 20 18 17 23 23 H 1.48496 * 109.47130 * 60.00050 * 22 20 18 24 24 H 1.48499 * 109.47500 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47014 * 300.00482 * 22 20 18 26 26 C 1.50170 * 118.92486 * 91.57261 * 17 16 15 27 27 C 1.46240 * 107.52880 * 289.58420 * 26 17 16 28 28 H 1.09000 * 109.46786 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47104 * 300.00359 * 1 2 3 31 31 H 1.09003 * 109.47285 * 119.99748 * 2 1 3 32 32 H 1.08999 * 109.47601 * 239.99655 * 2 1 3 33 33 H 1.08002 * 128.08133 * 359.97438 * 7 6 4 34 34 H 1.08992 * 109.20819 * 336.99781 * 14 12 3 35 35 H 1.09003 * 109.20605 * 96.31575 * 14 12 3 36 36 H 1.09000 * 109.43030 * 201.05913 * 15 14 12 37 37 H 1.09006 * 109.13459 * 81.43009 * 15 14 12 38 38 H 1.09004 * 108.15880 * 196.80978 * 16 15 14 39 39 H 1.09001 * 108.00236 * 80.11705 * 16 15 14 40 40 H 0.97005 * 120.00111 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.84460 * 170.08304 * 26 17 16 42 42 H 1.08993 * 109.84954 * 49.09096 * 26 17 16 43 43 H 1.09001 * 108.52117 * 297.16996 * 27 26 17 44 44 H 1.09002 * 108.40019 * 179.56588 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1827 2.0379 -1.1655 5 8 2.6767 3.1488 -1.1729 6 6 1.7632 1.4086 -2.4321 7 6 1.9567 1.8960 -3.6954 8 6 1.3727 0.9148 -4.5296 9 17 1.2912 0.9413 -6.2635 10 7 0.9033 -0.0101 -3.7420 11 8 1.1077 0.2416 -2.5774 12 6 2.3281 2.0486 1.2668 13 1 2.1385 1.3759 2.1032 14 6 3.7591 2.5026 1.2786 15 6 4.3754 2.3497 2.6886 16 6 3.3342 2.7284 3.7711 17 7 2.5273 3.8814 3.4939 18 6 2.9508 5.1313 3.8597 19 1 3.6147 5.2512 4.7030 20 6 2.5268 6.2440 3.1464 21 7 1.8981 6.0908 2.0003 22 14 2.8485 7.9591 3.8132 23 1 4.3113 8.1654 3.9635 24 1 2.3002 8.9675 2.8710 25 1 2.1892 8.1078 5.1355 26 6 1.2108 3.6957 2.7958 27 6 1.4954 3.3183 1.4119 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.4433 2.8149 -3.9876 34 1 4.3310 1.9040 0.5697 35 1 3.8053 3.5504 0.9817 36 1 5.2433 3.0031 2.7777 37 1 4.6861 1.3148 2.8324 38 1 3.8652 2.9023 4.7070 39 1 2.6705 1.8755 3.9131 40 1 1.6014 6.8685 1.5020 41 1 0.6463 4.6279 2.8165 42 1 0.6406 2.9060 3.2850 43 1 2.0286 4.1389 0.9319 44 1 0.5479 3.1721 0.8933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998182913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = 68.053334 kcal Electronic energy + Delta-G solvation = -29203.391975 eV Core-core repulsion = 25186.997795 eV Total energy + Delta-G solvation = -4016.394180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -45.40351 -40.18594 -37.49502 -37.42392 -35.84977 -33.90732 -33.32791 -32.15797 -31.40875 -30.62574 -29.65589 -26.21128 -24.97469 -23.88163 -23.72234 -23.03116 -22.79825 -20.88535 -19.91149 -19.11348 -18.20327 -17.45021 -16.77623 -16.57315 -15.91109 -15.28794 -14.89598 -14.73934 -14.33189 -14.14898 -13.78952 -13.74138 -13.58321 -13.20735 -13.13652 -13.03838 -12.69675 -12.47632 -12.16162 -11.90084 -11.74088 -11.38565 -11.32674 -11.20424 -11.13309 -10.76537 -10.64694 -10.44518 -10.30024 -10.20411 -10.00796 -9.91057 -9.81196 -9.69691 -9.35257 -9.19459 -8.52999 -8.28133 -6.60779 -5.71292 -3.19372 0.56956 1.13849 1.55081 2.38964 3.05342 3.11030 3.41889 3.47919 3.48228 3.93804 4.44746 4.51466 4.54162 4.77812 4.92912 5.18872 5.35013 5.40045 5.44424 5.46449 5.57399 5.69663 5.77937 5.83268 5.88993 6.12370 6.17875 6.21414 6.30980 6.44917 6.52805 6.67062 6.87951 6.92247 6.99653 7.05934 7.20706 7.26804 7.46070 7.59175 7.71900 7.79787 8.08087 8.22022 8.51222 9.25458 9.90178 10.44053 11.34413 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003213 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.351294 B = 8711.873271 C = 9614.255699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.590 5.590 4 C 0.592 3.408 5 O -0.479 6.479 6 C -0.055 4.055 7 C -0.146 4.146 8 C 0.053 3.947 9 Cl 0.028 6.972 10 N -0.338 5.338 11 O 0.137 5.863 12 C 0.154 3.846 13 H 0.086 0.914 14 C -0.109 4.109 15 C -0.143 4.143 16 C 0.157 3.843 17 N -0.588 5.588 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.170 3.830 27 C -0.137 4.137 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.095 0.905 42 H 0.002 0.998 43 H 0.122 0.878 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -14.065 -10.009 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.375 3.625 5 O -0.352 6.352 6 C -0.121 4.121 7 C -0.170 4.170 8 C -0.130 4.130 9 Cl 0.055 6.945 10 N -0.040 5.040 11 O 0.062 5.938 12 C 0.053 3.947 13 H 0.104 0.896 14 C -0.148 4.148 15 C -0.185 4.185 16 C 0.027 3.973 17 N -0.309 5.309 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.046 3.954 27 C -0.176 4.176 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.211 0.789 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.020 0.980 43 H 0.140 0.860 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.331 -14.428 -10.474 17.980 hybrid contribution 0.532 1.471 -0.339 1.600 sum -1.799 -12.957 -10.813 16.972 Atomic orbital electron populations 1.22211 0.95351 1.02328 1.02773 1.21748 0.95124 0.82242 1.03259 1.48289 1.64011 1.13848 1.06122 1.16570 0.80151 0.85073 0.80694 1.90982 1.42089 1.17527 1.84576 1.24638 1.00968 0.88499 0.97967 1.22751 1.02973 1.01862 0.89372 1.24026 1.04012 0.94721 0.90226 1.98417 1.97184 1.98007 1.00848 1.73812 1.18327 1.21999 0.89857 1.85251 1.55557 1.33276 1.19745 1.20761 0.97186 0.95248 0.81511 0.89584 1.21704 0.93432 1.03285 0.96332 1.22861 1.00297 0.98548 0.96753 1.20432 0.91999 0.89935 0.94904 1.44167 1.15558 1.02390 1.68809 1.19122 1.27344 0.83085 1.08560 0.91762 1.25048 1.00852 0.98080 0.95283 1.69882 1.42842 1.28598 1.12994 0.86377 0.77923 0.84484 0.77921 1.21091 1.21724 1.21231 1.20125 0.87059 0.99085 0.89129 1.21440 0.98145 0.97003 1.01033 0.92588 0.91395 0.91698 0.89466 0.90471 0.78939 0.94561 0.89379 0.92733 0.94018 0.94946 0.95670 0.93619 0.88668 0.98044 0.86003 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.70 37.16 0.36 -1.39 16 2 C 0.10 1.09 5.66 -4.04 -0.02 1.07 16 3 N -0.59 -8.80 2.31 -169.25 -0.39 -9.19 16 4 C 0.59 9.62 6.99 -12.47 -0.09 9.53 16 5 O -0.48 -9.61 14.23 5.30 0.08 -9.53 16 6 C -0.05 -0.74 6.66 -36.32 -0.24 -0.98 16 7 C -0.15 -1.80 10.96 -38.90 -0.43 -2.22 16 8 C 0.05 0.63 7.97 -17.02 -0.14 0.49 16 9 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 10 N -0.34 -4.27 12.05 32.82 0.40 -3.87 16 11 O 0.14 1.68 6.50 15.55 0.10 1.78 16 12 C 0.15 2.69 2.37 -69.60 -0.16 2.52 16 13 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 14 C -0.11 -2.10 4.07 -27.30 -0.11 -2.21 16 15 C -0.14 -2.62 6.40 -24.87 -0.16 -2.78 16 16 C 0.16 3.13 5.18 -4.66 -0.02 3.11 16 17 N -0.59 -13.97 2.60 -175.08 -0.45 -14.42 16 18 C -0.25 -6.65 9.63 -15.06 -0.15 -6.80 16 19 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 20 C 0.01 0.15 5.09 -17.43 -0.09 0.07 16 21 N -0.90 -24.78 9.09 55.49 0.50 -24.28 16 22 Si 0.90 21.48 29.57 -169.99 -5.03 16.45 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.17 3.85 5.23 -5.20 -0.03 3.82 16 27 C -0.14 -2.90 3.75 -30.18 -0.11 -3.01 16 28 H 0.06 0.64 6.60 -51.93 -0.34 0.30 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 32 H 0.08 0.78 5.82 -51.93 -0.30 0.48 16 33 H 0.19 2.09 8.06 -52.49 -0.42 1.66 16 34 H 0.04 0.65 7.82 -51.93 -0.41 0.25 16 35 H 0.09 2.11 6.36 -51.93 -0.33 1.78 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.65 8.00 -51.93 -0.42 0.23 16 39 H 0.02 0.45 6.88 -51.93 -0.36 0.10 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.10 2.45 6.08 -51.93 -0.32 2.13 16 42 H 0.00 0.03 8.12 -51.93 -0.42 -0.39 16 43 H 0.12 3.11 4.41 -51.93 -0.23 2.88 16 44 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -28.58 355.39 -8.26 -36.84 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.92 Total: 0.89 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.39 Total: 1.23 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.05 Total: -51.76 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.18 Total: -7.75 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.58 -8.26 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998182913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.894 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds