Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47298 * 2 1 4 4 C 1.34782 * 120.00098 * 273.14113 * 3 2 1 5 5 O 1.21579 * 120.00213 * 185.21222 * 4 3 2 6 6 C 1.47525 * 119.99620 * 5.20959 * 4 3 2 7 7 C 1.36780 * 126.92603 * 185.49501 * 6 4 3 8 8 C 1.41412 * 103.83792 * 179.87942 * 7 6 4 9 9 Cl 1.73600 * 126.72640 * 180.13786 * 8 7 6 10 10 N 1.30235 * 106.54687 * 0.38860 * 8 7 6 11 11 O 1.20882 * 111.95690 * 359.74686 * 10 8 7 12 12 C 1.46497 * 120.00144 * 93.14326 * 3 2 1 13 13 H 1.09003 * 110.21689 * 359.97438 * 12 3 2 14 14 C 1.50126 * 110.25153 * 121.93508 * 12 3 2 15 15 C 1.54635 * 110.92859 * 216.54229 * 14 12 3 16 16 C 1.54899 * 110.19055 * 321.33906 * 15 14 12 17 17 N 1.43436 * 116.07673 * 318.52648 * 16 15 14 18 18 C 1.36944 * 120.53835 * 271.58763 * 17 16 15 19 19 H 1.08001 * 119.99948 * 332.48704 * 18 17 16 20 20 C 1.38804 * 119.99998 * 152.48120 * 18 17 16 21 21 N 1.31621 * 120.00207 * 349.13797 * 20 18 17 22 22 Si 1.86802 * 120.00157 * 169.13732 * 20 18 17 23 23 H 1.48496 * 109.47130 * 60.00050 * 22 20 18 24 24 H 1.48499 * 109.47500 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47014 * 300.00482 * 22 20 18 26 26 C 1.50170 * 118.92486 * 91.57261 * 17 16 15 27 27 C 1.46240 * 107.52880 * 289.58420 * 26 17 16 28 28 H 1.09000 * 109.46786 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47104 * 300.00359 * 1 2 3 31 31 H 1.09003 * 109.47285 * 119.99748 * 2 1 3 32 32 H 1.08999 * 109.47601 * 239.99655 * 2 1 3 33 33 H 1.08002 * 128.08133 * 359.97438 * 7 6 4 34 34 H 1.08992 * 109.20819 * 336.99781 * 14 12 3 35 35 H 1.09003 * 109.20605 * 96.31575 * 14 12 3 36 36 H 1.09000 * 109.43030 * 201.05913 * 15 14 12 37 37 H 1.09006 * 109.13459 * 81.43009 * 15 14 12 38 38 H 1.09004 * 108.15880 * 196.80978 * 16 15 14 39 39 H 1.09001 * 108.00236 * 80.11705 * 16 15 14 40 40 H 0.97005 * 120.00111 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.84460 * 170.08304 * 26 17 16 42 42 H 1.08993 * 109.84954 * 49.09096 * 26 17 16 43 43 H 1.09001 * 108.52117 * 297.16996 * 27 26 17 44 44 H 1.09002 * 108.40019 * 179.56588 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1827 2.0379 -1.1655 5 8 2.6767 3.1488 -1.1729 6 6 1.7632 1.4086 -2.4321 7 6 1.9567 1.8960 -3.6954 8 6 1.3727 0.9148 -4.5296 9 17 1.2912 0.9413 -6.2635 10 7 0.9033 -0.0101 -3.7420 11 8 1.1077 0.2416 -2.5774 12 6 2.3281 2.0486 1.2668 13 1 2.1385 1.3759 2.1032 14 6 3.7591 2.5026 1.2786 15 6 4.3754 2.3497 2.6886 16 6 3.3342 2.7284 3.7711 17 7 2.5273 3.8814 3.4939 18 6 2.9508 5.1313 3.8597 19 1 3.6147 5.2512 4.7030 20 6 2.5268 6.2440 3.1464 21 7 1.8981 6.0908 2.0003 22 14 2.8485 7.9591 3.8132 23 1 4.3113 8.1654 3.9635 24 1 2.3002 8.9675 2.8710 25 1 2.1892 8.1078 5.1355 26 6 1.2108 3.6957 2.7958 27 6 1.4954 3.3183 1.4119 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.4433 2.8149 -3.9876 34 1 4.3310 1.9040 0.5697 35 1 3.8053 3.5504 0.9817 36 1 5.2433 3.0031 2.7777 37 1 4.6861 1.3148 2.8324 38 1 3.8652 2.9023 4.7070 39 1 2.6705 1.8755 3.9131 40 1 1.6014 6.8685 1.5020 41 1 0.6463 4.6279 2.8165 42 1 0.6406 2.9060 3.2850 43 1 2.0286 4.1389 0.9319 44 1 0.5479 3.1721 0.8933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998182913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 52.682975 kcal Electronic energy + Delta-G solvation = -29204.058484 eV Core-core repulsion = 25186.997795 eV Total energy + Delta-G solvation = -4017.060689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.39290 -41.51632 -39.07324 -38.29415 -37.13554 -35.00399 -34.84650 -33.52799 -32.73475 -32.41814 -30.86661 -27.91165 -26.39218 -25.01937 -24.83334 -24.81741 -23.84798 -22.16342 -21.43453 -20.60304 -19.21847 -18.66280 -18.51990 -17.61568 -17.31962 -16.85291 -16.27276 -16.06594 -15.61182 -15.55505 -15.32468 -15.17107 -14.98912 -14.60432 -14.39798 -13.92089 -13.68664 -13.63047 -13.55933 -13.43581 -13.12745 -13.03601 -12.89061 -12.60975 -12.44091 -12.25484 -12.09910 -12.01271 -11.83489 -11.65986 -11.51954 -11.25393 -11.24220 -10.99040 -10.92781 -10.91586 -10.41049 -9.67603 -8.51529 -7.74064 -5.22947 -0.49213 0.23869 0.57435 1.26647 1.49946 1.50331 1.56736 1.84302 1.98797 2.57440 2.92864 3.39220 3.47880 3.48651 3.68957 3.75884 4.02819 4.07276 4.20997 4.34344 4.39305 4.50071 4.55286 4.59008 4.67733 4.75494 4.83678 4.91000 4.99661 5.01964 5.20000 5.27080 5.32689 5.39254 5.40621 5.50518 5.63435 5.68149 5.72203 5.82289 6.20478 6.38280 6.52393 6.59241 6.93673 7.26460 7.98410 8.48152 9.27849 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003213 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.351294 B = 8711.873271 C = 9614.255699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.587 5.587 4 C 0.591 3.409 5 O -0.528 6.528 6 C -0.064 4.064 7 C -0.140 4.140 8 C 0.053 3.947 9 Cl 0.047 6.953 10 N -0.342 5.342 11 O 0.148 5.852 12 C 0.168 3.832 13 H 0.112 0.888 14 C -0.097 4.097 15 C -0.135 4.135 16 C 0.148 3.852 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.062 0.938 20 C -0.043 4.043 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.280 1.280 26 C 0.173 3.827 27 C -0.122 4.122 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.203 0.797 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.243 0.757 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -16.909 -9.947 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.318 5.318 4 C 0.375 3.625 5 O -0.405 6.405 6 C -0.130 4.130 7 C -0.163 4.163 8 C -0.130 4.130 9 Cl 0.075 6.925 10 N -0.043 5.043 11 O 0.072 5.928 12 C 0.067 3.933 13 H 0.130 0.870 14 C -0.136 4.136 15 C -0.176 4.176 16 C 0.021 3.979 17 N -0.324 5.324 18 C -0.389 4.389 19 H 0.080 0.920 20 C -0.239 4.239 21 N -0.562 5.562 22 Si 0.787 3.213 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.206 1.206 26 C 0.049 3.951 27 C -0.161 4.161 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.381 -17.333 -10.406 20.356 hybrid contribution 0.525 2.286 -0.408 2.381 sum -1.855 -15.047 -10.813 18.622 Atomic orbital electron populations 1.22188 0.94776 1.03739 1.01607 1.22085 0.95543 0.79905 1.05214 1.48313 1.63429 1.15218 1.04832 1.16834 0.79379 0.84546 0.81718 1.90976 1.44337 1.19654 1.85508 1.24117 1.02349 0.89419 0.97100 1.22956 1.02115 1.02056 0.89129 1.24114 1.03487 0.94210 0.91193 1.98429 1.97056 1.97927 0.99091 1.73783 1.18341 1.22188 0.90002 1.85249 1.55277 1.32598 1.19706 1.20456 0.95090 0.94275 0.83512 0.87010 1.21501 0.94956 1.00039 0.97066 1.22784 0.98891 1.00581 0.95322 1.20610 0.92625 0.89493 0.95213 1.44321 1.16556 1.02627 1.68944 1.19354 1.26715 0.84599 1.08238 0.92023 1.25672 1.01549 1.00957 0.95712 1.70104 1.43905 1.28334 1.13811 0.85509 0.77602 0.80970 0.77240 1.20910 1.22555 1.20585 1.20002 0.86742 0.98077 0.90232 1.21140 0.97806 0.97654 0.99509 0.94037 0.88656 0.92608 0.86833 0.89180 0.78013 0.93533 0.94907 0.94620 0.89776 0.94997 0.92714 0.94781 0.92466 0.95347 0.90413 0.96048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.70 71.98 0.70 -2.27 16 2 C 0.09 1.76 5.66 86.38 0.49 2.25 16 3 N -0.59 -16.63 2.31 -807.65 -1.86 -18.50 16 4 C 0.59 19.14 6.99 86.69 0.61 19.75 16 5 O -0.53 -22.10 14.23 -3.96 -0.06 -22.16 16 6 C -0.06 -1.67 6.66 24.38 0.16 -1.51 16 7 C -0.14 -3.30 10.96 22.71 0.25 -3.05 16 8 C 0.05 1.17 7.97 85.71 0.68 1.85 16 9 Cl 0.05 0.84 29.33 -2.72 -0.08 0.76 16 10 N -0.34 -7.96 12.05 -51.02 -0.61 -8.57 16 11 O 0.15 3.35 6.50 65.83 0.43 3.78 16 12 C 0.17 5.67 2.37 43.91 0.10 5.78 16 13 H 0.11 3.23 5.95 -2.39 -0.01 3.22 16 14 C -0.10 -3.69 4.07 30.23 0.12 -3.56 16 15 C -0.13 -4.68 6.40 31.80 0.20 -4.48 16 16 C 0.15 5.66 5.18 87.59 0.45 6.11 16 17 N -0.60 -28.64 2.60 -707.84 -1.84 -30.47 16 18 C -0.26 -13.91 9.63 84.03 0.81 -13.10 16 19 H 0.06 3.28 7.85 -2.91 -0.02 3.26 16 20 C -0.04 -2.37 5.09 84.86 0.43 -1.94 16 21 N -0.92 -52.98 9.09 21.65 0.20 -52.78 16 22 Si 0.96 45.38 29.57 68.60 2.03 47.41 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.17 7.91 5.23 83.58 0.44 8.35 16 27 C -0.12 -5.23 3.75 28.36 0.11 -5.13 16 28 H 0.04 0.87 6.60 -2.39 -0.02 0.85 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.60 7.87 -2.39 -0.02 1.58 16 32 H 0.09 1.51 5.82 -2.39 -0.01 1.50 16 33 H 0.20 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.05 1.64 7.82 -2.39 -0.02 1.62 16 35 H 0.03 1.62 6.36 -2.39 -0.02 1.61 16 36 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.03 1.22 8.00 -2.38 -0.02 1.20 16 39 H 0.05 1.77 6.88 -2.39 -0.02 1.75 16 40 H 0.24 14.07 8.31 -92.70 -0.77 13.30 16 41 H 0.06 3.05 6.08 -2.39 -0.01 3.04 16 42 H 0.03 1.13 8.12 -2.39 -0.02 1.12 16 43 H 0.08 4.17 4.41 -2.39 -0.01 4.16 16 44 H 0.02 0.90 8.02 -2.39 -0.02 0.88 16 Total: -1.00 -65.45 355.39 4.79 -60.66 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.03 Total: 10.82 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.56 Total: 9.05 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.12 Total: -110.33 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.37 Total: -18.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -65.45 4.79 -60.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998182913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.339 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds