Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47124 * 2 1 4 4 C 1.35636 * 125.67508 * 260.89078 * 3 2 1 5 5 C 1.35517 * 108.85111 * 180.23395 * 4 3 2 6 6 Cl 1.73595 * 126.07538 * 179.79164 * 5 4 3 7 7 C 1.39888 * 107.84836 * 359.76674 * 5 4 3 8 8 C 1.37633 * 125.67881 * 80.72260 * 3 2 1 9 9 C 1.46674 * 126.21895 * 0.03750 * 8 3 2 10 10 O 1.21695 * 120.00335 * 4.76741 * 9 8 3 11 11 N 1.34777 * 119.99743 * 184.76653 * 9 8 3 12 12 C 1.46498 * 120.00079 * 174.55394 * 11 9 8 13 13 C 1.52999 * 109.47107 * 180.27586 * 12 11 9 14 14 H 1.09000 * 109.50851 * 304.99262 * 13 12 11 15 15 C 1.53304 * 109.50866 * 184.89929 * 13 12 11 16 16 N 1.47158 * 108.37995 * 187.77285 * 15 13 12 17 17 C 1.36936 * 120.97908 * 230.55047 * 16 15 13 18 18 H 1.08001 * 119.99865 * 14.94670 * 17 16 15 19 19 C 1.38813 * 119.99979 * 194.93721 * 17 16 15 20 20 N 1.31614 * 119.99876 * 34.90333 * 19 17 16 21 21 Si 1.86797 * 120.00038 * 214.90235 * 19 17 16 22 22 H 1.48502 * 109.47097 * 84.99797 * 21 19 17 23 23 H 1.48498 * 109.47341 * 204.99715 * 21 19 17 24 24 H 1.48503 * 109.47347 * 325.00274 * 21 19 17 25 25 C 1.47147 * 118.03493 * 50.53371 * 16 15 13 26 26 C 1.53294 * 108.38855 * 309.46144 * 25 16 15 27 27 O 1.42950 * 109.51644 * 65.10056 * 13 12 11 28 28 H 1.09005 * 109.47147 * 60.00464 * 1 2 3 29 29 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47236 * 300.00267 * 1 2 3 31 31 H 1.09002 * 109.47236 * 239.99733 * 2 1 3 32 32 H 1.09002 * 109.47148 * 120.00309 * 2 1 3 33 33 H 1.08004 * 125.57281 * 0.02562 * 4 3 2 34 34 H 1.08006 * 126.44870 * 179.97438 * 7 5 4 35 35 H 0.97001 * 119.99719 * 354.82086 * 11 9 8 36 36 H 1.09001 * 109.46863 * 300.27151 * 12 11 9 37 37 H 1.08997 * 109.47218 * 60.27312 * 12 11 9 38 38 H 1.08999 * 109.67758 * 307.48903 * 15 13 12 39 39 H 1.09001 * 109.68511 * 68.01168 * 15 13 12 40 40 H 0.96993 * 120.00119 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.68415 * 69.18660 * 25 16 15 42 42 H 1.09005 * 109.68069 * 189.70185 * 25 16 15 43 43 H 1.08993 * 109.51469 * 172.22794 * 26 25 16 44 44 H 1.09002 * 109.51192 * 292.38387 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4465 2.0688 -1.0879 5 6 2.8252 3.3108 -0.6998 6 17 3.4497 4.5585 -1.7326 7 6 2.6229 3.4089 0.6809 8 6 2.1160 2.1981 1.1034 9 6 1.7529 1.8431 2.4794 10 8 1.4010 0.7082 2.7424 11 7 1.8090 2.7738 3.4526 12 6 1.3338 2.4535 4.8008 13 6 1.5015 3.6765 5.7047 14 1 2.5390 4.0095 5.6777 15 6 1.1196 3.3067 7.1426 16 7 1.1083 4.5365 7.9506 17 6 1.7843 4.6050 9.1395 18 1 2.5233 3.8565 9.3844 19 6 1.5199 5.6367 10.0298 20 7 0.2971 6.1099 10.1444 21 14 2.8996 6.3534 11.0653 22 1 3.6113 7.3986 10.2865 23 1 2.3318 6.9554 12.2982 24 1 3.8528 5.2760 11.4341 25 6 0.3493 5.6905 7.4431 26 6 0.7687 5.9442 5.9907 27 8 0.6499 4.7293 5.2465 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4830 1.6876 -2.0978 34 1 2.8260 4.2706 1.2996 35 1 2.1605 3.6570 3.2593 36 1 0.2808 2.1749 4.7582 37 1 1.9135 1.6225 5.2025 38 1 0.1295 2.8510 7.1537 39 1 1.8504 2.6070 7.5482 40 1 0.1124 6.8310 10.7662 41 1 -0.7183 5.4747 7.4846 42 1 0.5698 6.5698 8.0484 43 1 0.1220 6.7043 5.5524 44 1 1.8033 6.2863 5.9649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035605437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = -12.304760 kcal Electronic energy + Delta-G solvation = -27326.868752 eV Core-core repulsion = 23306.989984 eV Total energy + Delta-G solvation = -4019.878768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.79725 -39.36409 -38.39331 -36.65955 -35.16780 -34.49832 -34.07949 -31.75784 -30.94997 -29.68145 -29.41926 -27.51318 -25.60757 -23.97375 -23.26466 -22.76325 -21.76425 -20.86322 -20.13036 -19.42335 -18.19165 -16.95979 -16.30768 -16.16455 -15.82212 -15.62790 -15.02582 -14.93879 -14.64892 -14.41753 -14.30399 -14.19600 -13.86613 -13.41387 -13.35890 -13.22364 -12.99148 -12.92809 -12.77706 -12.44955 -12.37429 -11.67244 -11.61586 -11.53724 -11.33737 -11.10219 -10.86147 -10.80682 -10.49136 -10.32644 -10.12320 -9.86878 -9.72984 -9.21411 -9.14700 -8.96681 -8.48983 -8.44482 -6.98358 -5.96610 -3.17108 1.16620 1.84542 2.17496 2.51853 3.18683 3.27993 3.34891 3.44216 3.44611 4.15403 4.35353 4.42062 4.54221 4.59611 4.70414 4.90180 4.96597 5.03432 5.20281 5.21436 5.34976 5.41354 5.43003 5.48699 5.64920 5.72680 5.78096 5.82614 5.94931 6.08104 6.13623 6.19056 6.29029 6.38587 6.41780 6.49736 6.65550 6.74047 6.98892 7.34941 7.43999 7.69799 7.77788 8.08863 8.18239 9.01720 9.70809 10.23947 11.12696 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002344 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.201623 B =11941.585490 C =12934.734549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.030 3.970 5 C -0.122 4.122 6 Cl -0.051 7.051 7 C -0.129 4.129 8 C -0.030 4.030 9 C 0.587 3.413 10 O -0.548 6.548 11 N -0.706 5.706 12 C 0.134 3.866 13 C 0.064 3.936 14 H 0.061 0.939 15 C 0.124 3.876 16 N -0.594 5.594 17 C -0.265 4.265 18 H 0.075 0.925 19 C 0.007 3.993 20 N -0.883 5.883 21 Si 0.885 3.115 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.132 3.868 26 C 0.042 3.958 27 O -0.389 6.389 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.066 0.934 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -7.873 -23.949 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.107 4.107 5 C -0.155 4.155 6 Cl -0.023 7.023 7 C -0.155 4.155 8 C -0.144 4.144 9 C 0.374 3.626 10 O -0.428 6.428 11 N -0.356 5.356 12 C 0.010 3.990 13 C 0.004 3.996 14 H 0.079 0.921 15 C -0.004 4.004 16 N -0.318 5.318 17 C -0.393 4.393 18 H 0.093 0.907 19 C -0.193 4.193 20 N -0.526 5.526 21 Si 0.714 3.286 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.006 3.994 26 C -0.036 4.036 27 O -0.308 6.308 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.913 -8.867 -23.789 25.554 hybrid contribution 1.012 1.179 0.562 1.652 sum 3.924 -7.688 -23.226 24.778 Atomic orbital electron populations 1.22088 0.93635 1.03336 1.03159 1.22118 0.96318 0.78660 1.05120 1.44032 1.45837 1.11798 1.05618 1.21694 1.04534 0.91891 0.92554 1.19888 1.12052 0.91573 0.91985 1.98328 1.86019 1.51514 1.66432 1.21253 1.03696 0.96972 0.93603 1.20067 1.13540 0.91869 0.88946 1.16847 0.77796 0.84938 0.83031 1.90796 1.48998 1.19750 1.83256 1.45622 1.63978 1.15835 1.10171 1.21462 1.00811 0.96783 0.79927 1.22822 0.94236 0.87404 0.95151 0.92065 1.21399 0.99354 0.90483 0.89144 1.44223 1.59152 1.07620 1.20767 1.19160 1.14109 1.11284 0.94706 0.90684 1.24692 0.95801 1.01603 0.97209 1.70295 1.16874 1.28259 1.37172 0.86548 0.83121 0.79797 0.79133 1.21375 1.21904 1.20396 1.21497 0.94286 0.92954 0.90616 1.23265 1.00176 0.85353 0.94766 1.87792 1.64126 1.22159 1.56743 0.92316 0.90467 0.91112 0.89069 0.87348 0.80652 0.82863 0.75875 0.90465 0.89768 0.95229 0.91602 0.93445 0.95472 0.88801 0.89861 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.15 37.16 0.38 -0.92 16 2 C 0.10 0.77 6.10 -4.04 -0.02 0.75 16 3 N -0.40 -3.90 2.77 -112.82 -0.31 -4.21 16 4 C 0.03 0.26 11.34 -16.84 -0.19 0.07 16 5 C -0.12 -1.22 6.66 -39.94 -0.27 -1.48 16 6 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 7 C -0.13 -1.37 10.35 -39.09 -0.40 -1.77 16 8 C -0.03 -0.35 6.88 -81.98 -0.56 -0.91 16 9 C 0.59 7.80 7.77 -12.85 -0.10 7.70 16 10 O -0.55 -8.40 14.19 5.19 0.07 -8.33 16 11 N -0.71 -8.97 5.49 -61.62 -0.34 -9.31 16 12 C 0.13 1.89 5.35 -4.04 -0.02 1.87 16 13 C 0.06 1.05 2.81 -26.57 -0.07 0.98 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.12 2.46 6.02 -3.53 -0.02 2.44 16 16 N -0.59 -14.42 3.08 -171.82 -0.53 -14.95 16 17 C -0.26 -7.07 9.62 -15.06 -0.14 -7.21 16 18 H 0.08 1.97 7.96 -52.49 -0.42 1.55 16 19 C 0.01 0.18 4.56 -17.43 -0.08 0.10 16 20 N -0.88 -25.06 11.61 55.49 0.64 -24.42 16 21 Si 0.89 20.96 29.67 -169.99 -5.04 15.92 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.13 3.05 5.73 -3.54 -0.02 3.03 16 26 C 0.04 0.78 6.98 37.31 0.26 1.04 16 27 O -0.39 -6.94 10.33 -35.23 -0.36 -7.31 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 31 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.11 1.02 6.76 -51.93 -0.35 0.67 16 33 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.15 1.41 7.45 -52.48 -0.39 1.02 16 35 H 0.41 4.61 7.37 -40.82 -0.30 4.31 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 2.38 5.90 -51.93 -0.31 2.07 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -31.15 376.71 -9.34 -40.49 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.35 Total: 2.76 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.27 Total: 5.67 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.54 Total: -52.89 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.29 Total: -15.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.92 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.15 -9.34 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035605437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.184 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds