Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46704 * 2 1 4 4 C 1.35621 * 125.68039 * 264.47297 * 3 2 1 5 5 C 1.35519 * 108.85455 * 179.75013 * 4 3 2 6 6 Cl 1.73596 * 126.07558 * 180.26601 * 5 4 3 7 7 C 1.39887 * 107.84828 * 0.44181 * 5 4 3 8 8 C 1.37638 * 125.67133 * 84.50779 * 3 2 1 9 9 C 1.46666 * 126.22456 * 359.97438 * 8 3 2 10 10 O 1.21703 * 120.00446 * 354.73294 * 9 8 3 11 11 N 1.34781 * 120.00220 * 174.72743 * 9 8 3 12 12 C 1.46493 * 120.00426 * 184.86993 * 11 9 8 13 13 C 1.52997 * 109.47512 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.51405 * 59.99799 * 13 12 11 15 15 C 1.53287 * 109.51661 * 180.10230 * 13 12 11 16 16 N 1.47152 * 108.38701 * 172.22755 * 15 13 12 17 17 C 1.36938 * 120.98513 * 129.48752 * 16 15 13 18 18 H 1.07997 * 120.00123 * 210.14783 * 17 16 15 19 19 C 1.38818 * 119.99740 * 30.14446 * 17 16 15 20 20 N 1.31617 * 120.00261 * 9.90350 * 19 17 16 21 21 Si 1.86802 * 119.99567 * 189.89527 * 19 17 16 22 22 H 1.48499 * 109.47010 * 90.00508 * 21 19 17 23 23 H 1.48502 * 109.46960 * 209.99808 * 21 19 17 24 24 H 1.48492 * 109.47565 * 330.00213 * 21 19 17 25 25 C 1.47153 * 118.03471 * 309.46423 * 16 15 13 26 26 C 1.53296 * 108.38320 * 50.53492 * 25 16 15 27 27 O 1.42955 * 109.26500 * 307.72110 * 26 25 16 28 28 H 1.09003 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47418 * 299.99174 * 1 2 3 30 30 H 1.08999 * 109.47812 * 59.99881 * 1 2 3 31 31 H 1.09004 * 109.46572 * 240.00647 * 2 1 3 32 32 H 1.08992 * 109.47194 * 120.00719 * 2 1 3 33 33 H 1.08006 * 125.57249 * 359.97438 * 4 3 2 34 34 H 1.07998 * 126.45155 * 179.83711 * 7 5 4 35 35 H 0.97001 * 119.99531 * 4.87759 * 11 9 8 36 36 H 1.09008 * 109.47282 * 300.00300 * 12 11 9 37 37 H 1.09000 * 109.47201 * 60.00101 * 12 11 9 38 38 H 1.09005 * 109.68484 * 291.94878 * 15 13 12 39 39 H 1.08996 * 109.68664 * 52.50031 * 15 13 12 40 40 H 0.97000 * 120.00153 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.68382 * 170.25992 * 25 16 15 42 42 H 1.09007 * 109.68011 * 290.77498 * 25 16 15 43 43 H 1.09000 * 109.51066 * 67.62417 * 26 25 16 44 44 H 1.08998 * 109.51110 * 187.72261 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3819 2.0917 -1.0965 5 6 2.7733 3.3292 -0.7066 6 17 3.3216 4.6039 -1.7497 7 6 2.6608 3.3955 0.6862 8 6 2.1848 2.1737 1.1130 9 6 1.9066 1.7886 2.5006 10 8 1.3971 0.7102 2.7425 11 7 2.2153 2.6291 3.5081 12 6 2.0368 2.2030 4.8982 13 6 2.4570 3.3357 5.8369 14 1 1.8418 4.2148 5.6449 15 6 2.2731 2.8899 7.2919 16 7 2.8560 3.9174 8.1694 17 6 2.1441 4.4349 9.2186 18 1 2.3199 5.4502 9.5419 19 6 1.1965 3.6543 9.8665 20 7 1.1162 2.3664 9.6075 21 14 0.0356 4.4320 11.1062 22 1 -1.1895 4.9013 10.4104 23 1 -0.3341 3.4277 12.1358 24 1 0.7071 5.5849 11.7579 25 6 4.2266 4.3720 7.8865 26 6 4.3154 4.7456 6.4024 27 8 3.8319 3.6569 5.6122 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.3594 1.7315 -2.1145 34 1 2.8977 4.2451 1.3093 35 1 2.5555 3.5162 3.3126 36 1 0.9889 1.9579 5.0715 37 1 2.6521 1.3241 5.0907 38 1 1.2109 2.7799 7.5108 39 1 2.7816 1.9392 7.4518 40 1 0.4538 1.8211 10.0599 41 1 4.4582 5.2434 8.4989 42 1 4.9320 3.5706 8.1067 43 1 3.7076 5.6303 6.2128 44 1 5.3528 4.9538 6.1408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035605442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = -16.748174 kcal Electronic energy + Delta-G solvation = -27464.431392 eV Core-core repulsion = 23444.359943 eV Total energy + Delta-G solvation = -4020.071449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.72935 -39.24671 -38.30738 -36.61895 -35.04155 -34.44429 -34.02225 -31.46539 -31.12470 -29.59471 -29.36708 -27.33048 -25.57230 -23.90255 -23.32902 -22.65496 -21.61959 -20.77925 -20.02332 -19.36889 -18.12598 -16.98355 -16.17182 -16.06411 -15.74924 -15.50248 -15.13422 -14.81359 -14.52935 -14.36888 -14.23792 -14.10204 -13.86855 -13.36964 -13.26415 -13.13361 -12.94398 -12.83913 -12.74976 -12.31933 -12.27554 -11.61732 -11.55611 -11.46723 -11.07507 -11.05833 -10.90087 -10.74681 -10.43122 -10.26846 -10.14083 -9.96557 -9.67643 -9.09484 -9.00205 -8.90377 -8.59885 -8.42208 -6.73460 -5.87122 -3.36822 1.24399 1.89728 2.23133 2.59078 3.27562 3.32039 3.38317 3.40173 3.40659 4.22761 4.40406 4.42119 4.60010 4.69474 4.76940 4.95950 5.02376 5.17395 5.27786 5.32887 5.41232 5.52092 5.54961 5.58863 5.71701 5.84651 5.89155 5.91823 5.99175 6.08661 6.20327 6.22274 6.33052 6.47841 6.54544 6.61137 6.77089 6.80316 7.05683 7.47377 7.57109 7.68034 7.81952 8.21217 8.33193 9.08963 9.69728 10.28434 11.20500 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002503 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.688963 B =11184.126712 C =12288.079990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.400 5.400 4 C 0.029 3.971 5 C -0.122 4.122 6 Cl -0.053 7.053 7 C -0.130 4.130 8 C -0.028 4.028 9 C 0.584 3.416 10 O -0.547 6.547 11 N -0.704 5.704 12 C 0.136 3.864 13 C 0.053 3.947 14 H 0.057 0.943 15 C 0.154 3.846 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.050 3.950 27 O -0.390 6.390 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.405 0.595 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -0.678 -22.377 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.108 4.108 5 C -0.155 4.155 6 Cl -0.024 7.024 7 C -0.157 4.157 8 C -0.142 4.142 9 C 0.371 3.629 10 O -0.427 6.427 11 N -0.354 5.354 12 C 0.012 3.988 13 C -0.006 4.006 14 H 0.074 0.926 15 C 0.028 3.972 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.309 6.309 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.240 0.760 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.889 -1.951 -22.234 22.400 hybrid contribution -0.467 1.084 0.619 1.333 sum 1.422 -0.867 -21.615 21.679 Atomic orbital electron populations 1.22081 0.93615 1.03309 1.03141 1.22105 0.96339 0.78656 1.05074 1.44032 1.46397 1.11993 1.04843 1.21670 1.05340 0.91470 0.92317 1.19878 1.12847 0.91225 0.91542 1.98324 1.88767 1.49496 1.65845 1.21239 1.04184 0.96926 0.93320 1.20124 1.13283 0.92283 0.88494 1.16870 0.78574 0.84369 0.83114 1.90807 1.44196 1.22826 1.84876 1.45652 1.65771 1.17999 1.06025 1.21475 1.01927 0.97642 0.77721 1.23186 0.82947 0.96288 0.98194 0.92550 1.21310 1.01411 0.90879 0.83640 1.43998 1.09574 1.46699 1.31559 1.19184 1.16769 0.95126 1.07557 0.91480 1.25195 1.01129 0.94975 0.98085 1.69949 1.36179 1.04050 1.44616 0.86210 0.80918 0.78299 0.80830 1.21293 1.21551 1.20366 1.21616 0.88451 0.98245 0.93443 1.23005 0.98080 0.88652 0.93050 1.87775 1.26394 1.52958 1.63820 0.90518 0.90956 0.92416 0.89164 0.87379 0.80706 0.82904 0.75998 0.89681 0.90544 0.88494 0.95058 0.93348 0.91975 0.95537 0.93857 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.16 37.16 0.38 -1.01 16 2 C 0.10 0.86 6.09 -4.04 -0.02 0.83 16 3 N -0.40 -4.20 2.76 -112.83 -0.31 -4.51 16 4 C 0.03 0.27 11.35 -16.85 -0.19 0.08 16 5 C -0.12 -1.28 6.66 -39.94 -0.27 -1.54 16 6 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 7 C -0.13 -1.47 10.35 -39.09 -0.40 -1.87 16 8 C -0.03 -0.34 6.88 -81.98 -0.56 -0.91 16 9 C 0.58 8.50 7.77 -12.86 -0.10 8.40 16 10 O -0.55 -9.19 14.19 5.19 0.07 -9.12 16 11 N -0.70 -9.97 5.43 -61.62 -0.33 -10.31 16 12 C 0.14 2.23 5.37 -4.05 -0.02 2.20 16 13 C 0.05 0.98 2.86 -26.58 -0.08 0.91 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.15 3.56 4.67 -3.54 -0.02 3.54 16 16 N -0.59 -14.59 3.04 -171.83 -0.52 -15.11 16 17 C -0.26 -6.86 9.64 -15.06 -0.15 -7.01 16 18 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 19 C 0.01 0.14 5.09 -17.43 -0.09 0.05 16 20 N -0.90 -25.55 11.01 55.49 0.61 -24.94 16 21 Si 0.91 21.19 29.57 -169.99 -5.03 16.17 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.11 2.23 6.74 -3.53 -0.02 2.20 16 26 C 0.05 0.86 6.98 37.31 0.26 1.12 16 27 O -0.39 -7.06 10.14 -35.23 -0.36 -7.42 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.82 7.51 -51.93 -0.39 0.43 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.11 1.14 6.77 -51.93 -0.35 0.79 16 33 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.15 1.50 7.45 -52.49 -0.39 1.11 16 35 H 0.41 5.07 7.25 -40.82 -0.30 4.78 16 36 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.10 2.47 6.22 -51.93 -0.32 2.14 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -30.94 376.15 -9.36 -40.30 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.36 Total: 4.32 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.28 Total: 7.00 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.56 Total: -54.88 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.28 Total: -16.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.94 -9.36 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035605442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.553 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds