Wall clock time and date at job start Sat Apr 11 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46704 * 2 1 4 4 C 1.35621 * 125.68039 * 264.47297 * 3 2 1 5 5 C 1.35519 * 108.85455 * 179.75013 * 4 3 2 6 6 Cl 1.73596 * 126.07558 * 180.26601 * 5 4 3 7 7 C 1.39887 * 107.84828 * 0.44181 * 5 4 3 8 8 C 1.37638 * 125.67133 * 84.50779 * 3 2 1 9 9 C 1.46666 * 126.22456 * 359.97438 * 8 3 2 10 10 O 1.21703 * 120.00446 * 354.73294 * 9 8 3 11 11 N 1.34781 * 120.00220 * 174.72743 * 9 8 3 12 12 C 1.46493 * 120.00426 * 184.86993 * 11 9 8 13 13 C 1.52997 * 109.47512 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.51405 * 59.99799 * 13 12 11 15 15 C 1.53287 * 109.51661 * 180.10230 * 13 12 11 16 16 N 1.47152 * 108.38701 * 172.22755 * 15 13 12 17 17 C 1.36938 * 120.98513 * 129.48752 * 16 15 13 18 18 H 1.07997 * 120.00123 * 210.14783 * 17 16 15 19 19 C 1.38818 * 119.99740 * 30.14446 * 17 16 15 20 20 N 1.31617 * 120.00261 * 9.90350 * 19 17 16 21 21 Si 1.86802 * 119.99567 * 189.89527 * 19 17 16 22 22 H 1.48499 * 109.47010 * 90.00508 * 21 19 17 23 23 H 1.48502 * 109.46960 * 209.99808 * 21 19 17 24 24 H 1.48492 * 109.47565 * 330.00213 * 21 19 17 25 25 C 1.47153 * 118.03471 * 309.46423 * 16 15 13 26 26 C 1.53296 * 108.38320 * 50.53492 * 25 16 15 27 27 O 1.42955 * 109.26500 * 307.72110 * 26 25 16 28 28 H 1.09003 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47418 * 299.99174 * 1 2 3 30 30 H 1.08999 * 109.47812 * 59.99881 * 1 2 3 31 31 H 1.09004 * 109.46572 * 240.00647 * 2 1 3 32 32 H 1.08992 * 109.47194 * 120.00719 * 2 1 3 33 33 H 1.08006 * 125.57249 * 359.97438 * 4 3 2 34 34 H 1.07998 * 126.45155 * 179.83711 * 7 5 4 35 35 H 0.97001 * 119.99531 * 4.87759 * 11 9 8 36 36 H 1.09008 * 109.47282 * 300.00300 * 12 11 9 37 37 H 1.09000 * 109.47201 * 60.00101 * 12 11 9 38 38 H 1.09005 * 109.68484 * 291.94878 * 15 13 12 39 39 H 1.08996 * 109.68664 * 52.50031 * 15 13 12 40 40 H 0.97000 * 120.00153 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.68382 * 170.25992 * 25 16 15 42 42 H 1.09007 * 109.68011 * 290.77498 * 25 16 15 43 43 H 1.09000 * 109.51066 * 67.62417 * 26 25 16 44 44 H 1.08998 * 109.51110 * 187.72261 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3819 2.0917 -1.0965 5 6 2.7733 3.3292 -0.7066 6 17 3.3216 4.6039 -1.7497 7 6 2.6608 3.3955 0.6862 8 6 2.1848 2.1737 1.1130 9 6 1.9066 1.7886 2.5006 10 8 1.3971 0.7102 2.7425 11 7 2.2153 2.6291 3.5081 12 6 2.0368 2.2030 4.8982 13 6 2.4570 3.3357 5.8369 14 1 1.8418 4.2148 5.6449 15 6 2.2731 2.8899 7.2919 16 7 2.8560 3.9174 8.1694 17 6 2.1441 4.4349 9.2186 18 1 2.3199 5.4502 9.5419 19 6 1.1965 3.6543 9.8665 20 7 1.1162 2.3664 9.6075 21 14 0.0356 4.4320 11.1062 22 1 -1.1895 4.9013 10.4104 23 1 -0.3341 3.4277 12.1358 24 1 0.7071 5.5849 11.7579 25 6 4.2266 4.3720 7.8865 26 6 4.3154 4.7456 6.4024 27 8 3.8319 3.6569 5.6122 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.3594 1.7315 -2.1145 34 1 2.8977 4.2451 1.3093 35 1 2.5555 3.5162 3.3126 36 1 0.9889 1.9579 5.0715 37 1 2.6521 1.3241 5.0907 38 1 1.2109 2.7799 7.5108 39 1 2.7816 1.9392 7.4518 40 1 0.4538 1.8211 10.0599 41 1 4.4582 5.2434 8.4989 42 1 4.9320 3.5706 8.1067 43 1 3.7076 5.6303 6.2128 44 1 5.3528 4.9538 6.1408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035605442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:32 Heat of formation + Delta-G solvation = -36.086356 kcal Electronic energy + Delta-G solvation = -27465.269959 eV Core-core repulsion = 23444.359943 eV Total energy + Delta-G solvation = -4020.910016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.56306 -40.55194 -39.72461 -37.37024 -36.48798 -35.96875 -34.90614 -33.25511 -32.66536 -30.57045 -30.17621 -28.98850 -27.17578 -25.09387 -24.64184 -23.86536 -22.95057 -21.65276 -21.52196 -20.54824 -19.08450 -18.83075 -17.52635 -17.30387 -16.92985 -16.80399 -16.48845 -16.06707 -15.67802 -15.56413 -15.50288 -15.17839 -15.08975 -15.00433 -14.57406 -14.52509 -14.12998 -13.76012 -13.73548 -13.59923 -13.19097 -12.98268 -12.91993 -12.71746 -12.52765 -12.37115 -12.18390 -12.15122 -12.08378 -11.91519 -11.82587 -11.32765 -11.11987 -10.75554 -10.58329 -10.22921 -9.73084 -9.24378 -8.70217 -7.90783 -5.44392 0.33485 1.14099 1.44299 1.46764 1.47255 1.56557 1.69367 2.23632 2.35884 2.48070 2.79365 3.25170 3.50226 3.64997 3.79374 3.97007 4.04836 4.07096 4.10216 4.20718 4.27641 4.38120 4.45684 4.48104 4.52098 4.60771 4.68136 4.74731 4.82398 4.84477 4.94959 4.98869 5.08527 5.18400 5.24129 5.29178 5.42384 5.55467 5.59630 5.72899 6.07130 6.27562 6.34570 6.46644 7.06649 7.09730 7.73558 8.28679 9.14344 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002503 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.688963 B =11184.126712 C =12288.079990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.402 5.402 4 C 0.051 3.949 5 C -0.141 4.141 6 Cl -0.046 7.046 7 C -0.124 4.124 8 C -0.059 4.059 9 C 0.583 3.417 10 O -0.577 6.577 11 N -0.698 5.698 12 C 0.149 3.851 13 C 0.075 3.925 14 H 0.064 0.936 15 C 0.162 3.838 16 N -0.615 5.615 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.267 1.267 25 C 0.102 3.898 26 C 0.057 3.943 27 O -0.389 6.389 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.212 0.788 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.001 0.999 40 H 0.252 0.748 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.054 0.946 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 0.642 -24.834 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.075 5.075 4 C -0.087 4.087 5 C -0.173 4.173 6 Cl -0.018 7.018 7 C -0.151 4.151 8 C -0.172 4.172 9 C 0.372 3.628 10 O -0.459 6.459 11 N -0.349 5.349 12 C 0.024 3.976 13 C 0.015 3.985 14 H 0.082 0.918 15 C 0.035 3.965 16 N -0.340 5.340 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.582 5.582 21 Si 0.800 3.200 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.191 1.191 25 C -0.023 4.023 26 C -0.021 4.021 27 O -0.309 6.309 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.229 0.771 34 H 0.180 0.820 35 H 0.251 0.749 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.504 -0.592 -24.708 24.841 hybrid contribution -0.569 0.685 1.326 1.598 sum 1.935 0.093 -23.381 23.461 Atomic orbital electron populations 1.22029 0.93566 1.03962 1.01988 1.22239 0.96349 0.77987 1.05816 1.44234 1.46117 1.12484 1.04627 1.22268 1.02482 0.90685 0.93228 1.19998 1.13874 0.92107 0.91371 1.98326 1.88739 1.49287 1.65427 1.21440 1.02915 0.96624 0.94120 1.19812 1.16036 0.93510 0.87864 1.17178 0.77759 0.83779 0.84069 1.90789 1.45555 1.24074 1.85469 1.45447 1.65998 1.18520 1.04930 1.21124 1.01146 0.96369 0.78937 1.22786 0.83576 0.96785 0.95333 0.91822 1.21070 0.99105 0.89764 0.86558 1.44301 1.11322 1.46707 1.31633 1.19539 1.16834 0.95416 1.07830 0.90981 1.25971 1.02902 0.95399 1.00163 1.70125 1.36889 1.05344 1.45829 0.85194 0.78921 0.77472 0.78404 1.20931 1.22217 1.19141 1.21830 0.86060 0.98100 0.96336 1.23082 1.00504 0.88321 0.90178 1.87793 1.25835 1.53579 1.63657 0.89045 0.94422 0.91047 0.85326 0.89694 0.77123 0.81993 0.74866 0.90343 0.91943 0.91403 0.98135 0.93916 0.90977 0.96663 0.92780 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.16 71.98 0.73 -1.78 16 2 C 0.10 1.52 6.09 86.38 0.53 2.05 16 3 N -0.40 -7.73 2.76 -510.88 -1.41 -9.14 16 4 C 0.05 0.78 11.35 83.48 0.95 1.73 16 5 C -0.14 -2.60 6.66 22.04 0.15 -2.46 16 6 Cl -0.05 -0.78 29.30 -2.72 -0.08 -0.86 16 7 C -0.12 -2.59 10.35 22.59 0.23 -2.36 16 8 C -0.06 -1.41 6.88 40.35 0.28 -1.14 16 9 C 0.58 17.19 7.77 86.44 0.67 17.87 16 10 O -0.58 -20.11 14.19 -4.36 -0.06 -20.18 16 11 N -0.70 -19.78 5.43 -467.09 -2.54 -22.32 16 12 C 0.15 5.03 5.37 86.38 0.46 5.49 16 13 C 0.07 2.77 2.86 30.69 0.09 2.86 16 14 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 15 C 0.16 7.75 4.67 86.35 0.40 8.15 16 16 N -0.62 -30.60 3.04 -697.55 -2.12 -32.72 16 17 C -0.27 -14.35 9.64 84.03 0.81 -13.54 16 18 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 19 C -0.05 -2.68 5.09 84.86 0.43 -2.25 16 20 N -0.94 -54.86 11.01 21.65 0.24 -54.63 16 21 Si 0.97 44.10 29.57 68.60 2.03 46.13 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 C 0.10 4.11 6.74 86.35 0.58 4.69 16 26 C 0.06 1.80 6.98 72.08 0.50 2.30 16 27 O -0.39 -13.60 10.14 -148.98 -1.51 -15.11 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.86 7.51 -2.39 -0.02 0.84 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.13 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.08 1.78 6.77 -2.39 -0.02 1.77 16 33 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.16 2.91 7.45 -2.91 -0.02 2.89 16 35 H 0.41 10.01 7.25 -92.71 -0.67 9.34 16 36 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 3.63 6.22 -2.38 -0.01 3.62 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 42 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.12 2.96 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -68.97 376.15 1.71 -67.26 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.35 Total: 19.95 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.82 Total: 21.61 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -5.83 Total: -118.80 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.57 Total: -35.29 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -68.97 1.71 -67.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035605442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.171 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds