Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99586 * 2 1 4 4 O 1.21556 * 119.99471 * 187.10876 * 3 2 1 5 5 C 1.47840 * 120.00240 * 7.10360 * 3 2 1 6 6 C 1.40019 * 120.55973 * 200.22824 * 5 3 2 7 7 C 1.38356 * 118.28665 * 179.97438 * 6 5 3 8 8 C 1.38341 * 119.30654 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.46462 * 180.02562 * 8 7 6 10 10 F 1.39901 * 109.47394 * 300.00186 * 9 8 7 11 11 F 1.39900 * 109.46794 * 59.99956 * 9 8 7 12 12 N 1.31936 * 121.08079 * 359.97438 * 8 7 6 13 13 C 1.31698 * 121.87339 * 359.76928 * 12 8 7 14 14 C 1.46494 * 119.99884 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.77671 * 183.23484 * 14 2 1 16 16 C 1.54320 * 110.72429 * 306.47438 * 14 2 1 17 17 N 1.47016 * 107.27305 * 140.55770 * 16 14 2 18 18 C 1.36940 * 125.64945 * 181.10021 * 17 16 14 19 19 H 1.07996 * 119.99501 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99833 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47358 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46848 * 119.99891 * 22 20 18 25 25 H 1.48499 * 109.47134 * 239.99764 * 22 20 18 26 26 C 1.47426 * 108.70384 * 1.06304 * 17 16 14 27 27 C 1.54909 * 104.82982 * 335.87224 * 26 17 16 28 28 H 1.09002 * 111.00193 * 278.89237 * 27 26 17 29 29 O 1.42896 * 111.00564 * 155.08645 * 27 26 17 30 30 H 1.08998 * 109.47182 * 265.97184 * 1 2 3 31 31 H 1.09001 * 109.47196 * 25.97250 * 1 2 3 32 32 H 1.09000 * 109.47274 * 145.97356 * 1 2 3 33 33 H 1.08004 * 120.85568 * 359.96143 * 6 5 3 34 34 H 1.08006 * 120.34407 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47551 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.70883 * 180.24453 * 13 12 8 37 37 H 1.08997 * 109.87849 * 21.13881 * 16 14 2 38 38 H 1.09000 * 110.01553 * 260.05223 * 16 14 2 39 39 H 0.97001 * 119.99631 * 180.02562 * 21 20 18 40 40 H 1.09007 * 110.36770 * 217.03326 * 26 17 16 41 41 H 1.09003 * 110.36867 * 94.70860 * 26 17 16 42 42 H 0.96705 * 114.00208 * 61.44595 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3474 1.1713 -0.1303 5 6 1.4081 2.4427 0.1583 6 6 1.9876 3.6505 -0.2491 7 6 1.2617 4.8160 -0.0795 8 6 -0.0014 4.7516 0.4812 9 6 -0.7954 6.0189 0.6670 10 9 -0.0913 6.8922 1.5029 11 9 -1.0005 6.6271 -0.5761 12 7 -0.5227 3.5987 0.8550 13 6 0.1267 2.4622 0.7097 14 6 2.1975 -1.2687 -0.0006 15 1 3.2720 -1.0948 0.0570 16 6 1.7274 -2.1711 1.1597 17 7 1.6779 -3.5487 0.6487 18 6 1.2874 -4.6509 1.3615 19 1 0.9814 -4.5468 2.3920 20 6 1.2850 -5.9017 0.7596 21 7 1.6575 -6.0283 -0.4964 22 14 0.7531 -7.4051 1.7323 23 1 0.3854 -6.9975 3.1121 24 1 -0.4197 -8.0324 1.0718 25 1 1.8713 -8.3808 1.7863 26 6 2.1173 -3.5471 -0.7586 27 6 1.8437 -2.1063 -1.2577 28 1 0.7959 -1.9796 -1.5301 29 8 2.6986 -1.7726 -2.3529 30 1 -0.3633 -0.0722 1.0251 31 1 -0.3634 0.9239 -0.4501 32 1 -0.3634 -0.8517 -0.5750 33 1 2.9758 3.6717 -0.6843 34 1 1.6768 5.7662 -0.3817 35 1 -1.7588 5.7813 1.1181 36 1 -0.3350 1.5380 1.0243 37 1 0.7359 -1.8627 1.4908 38 1 2.4313 -2.1087 1.9896 39 1 1.6554 -6.9024 -0.9170 40 1 1.5375 -4.2658 -1.3379 41 1 3.1810 -3.7756 -0.8242 42 1 2.5809 -2.3363 -3.1298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047402054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -105.205825 kcal Electronic energy + Delta-G solvation = -29679.433661 eV Core-core repulsion = 25103.729720 eV Total energy + Delta-G solvation = -4575.703941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.09858 -48.08916 -42.17873 -40.71684 -39.33321 -36.83381 -36.57867 -34.30764 -33.83926 -33.13613 -30.51908 -29.18041 -28.48370 -27.96411 -26.28923 -24.88671 -24.13141 -22.38778 -22.14943 -20.66881 -19.31903 -19.06658 -18.85138 -18.44635 -18.33556 -18.10699 -17.60271 -17.21457 -16.66628 -16.30301 -16.07237 -15.86198 -15.45812 -15.20321 -15.10300 -14.88225 -14.77560 -14.48811 -14.45559 -14.39025 -14.22282 -13.90180 -13.69798 -13.52029 -13.21832 -13.06550 -12.88290 -12.77212 -12.72130 -12.24946 -12.00208 -11.92975 -11.52654 -11.42445 -11.20736 -11.00994 -10.77501 -10.74496 -10.46194 -9.80508 -8.97096 -7.81020 -5.27570 -0.77914 -0.05136 1.48584 1.49119 1.50725 1.59808 1.64830 2.17169 2.43120 2.48449 3.03672 3.12281 3.22698 3.29205 3.31860 3.55998 3.62487 3.65605 3.77778 3.82328 3.93939 3.97958 4.04256 4.11280 4.19148 4.36483 4.40344 4.44386 4.51935 4.68490 4.77986 4.80939 4.84014 4.94244 5.19037 5.36449 5.37090 5.46773 5.67391 6.16954 6.20354 6.42898 6.81891 6.87353 7.04445 7.69491 8.31313 9.20979 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.002360 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.015768 B =11859.452684 C =12465.340318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.589 5.589 3 C 0.560 3.440 4 O -0.569 6.569 5 C -0.172 4.172 6 C -0.020 4.020 7 C -0.138 4.138 8 C 0.061 3.939 9 C 0.328 3.672 10 F -0.198 7.198 11 F -0.197 7.197 12 N -0.464 5.464 13 C 0.120 3.880 14 C 0.148 3.852 15 H 0.085 0.915 16 C 0.133 3.867 17 N -0.617 5.617 18 C -0.236 4.236 19 H 0.088 0.912 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.297 1.297 26 C 0.135 3.865 27 C 0.083 3.917 28 H 0.082 0.918 29 O -0.572 6.572 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.211 0.789 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.249 0.751 40 H 0.089 0.911 41 H -0.011 1.011 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 22.566 -0.100 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.320 5.320 3 C 0.349 3.651 4 O -0.449 6.449 5 C -0.177 4.177 6 C -0.046 4.046 7 C -0.158 4.158 8 C -0.078 4.078 9 C 0.273 3.727 10 F -0.179 7.179 11 F -0.179 7.179 12 N -0.173 5.173 13 C -0.037 4.037 14 C 0.044 3.956 15 H 0.103 0.897 16 C 0.007 3.993 17 N -0.345 5.345 18 C -0.365 4.365 19 H 0.106 0.894 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.810 3.190 23 H -0.189 1.189 24 H -0.216 1.216 25 H -0.225 1.225 26 C 0.009 3.991 27 C 0.022 3.978 28 H 0.099 0.901 29 O -0.379 6.379 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.179 0.821 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.007 0.993 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.204 22.861 0.598 24.296 hybrid contribution 1.161 -1.605 -0.549 2.056 sum -7.043 21.256 0.049 22.393 Atomic orbital electron populations 1.22784 0.77370 1.05138 1.04011 1.47613 1.08277 1.04345 1.71719 1.18428 0.86618 0.83905 0.76155 1.90780 1.15713 1.87392 1.51035 1.20975 0.97502 0.93895 1.05340 1.21890 1.00119 0.90273 0.92367 1.22110 0.94416 1.00503 0.98757 1.22111 0.93866 0.94758 0.97043 1.20325 0.96251 0.80208 0.75888 1.93033 1.81939 1.71391 1.71574 1.93034 1.95660 1.84554 1.44604 1.67456 1.36186 0.97714 1.15925 1.24465 0.89546 0.97673 0.92055 1.21769 0.97024 0.82393 0.94429 0.89665 1.21617 0.99530 0.84209 0.93965 1.44508 1.77830 1.02517 1.09615 1.19495 1.36363 0.85380 0.95252 0.89400 1.25628 1.02083 1.00340 0.97566 1.69975 1.54849 1.22631 1.12382 0.84957 0.76886 0.78940 0.78196 1.18916 1.21551 1.22455 1.22355 0.96440 0.93893 0.86459 1.23471 0.93468 0.94505 0.86378 0.90082 1.86426 1.64225 1.60736 1.26496 0.88633 0.87735 0.90003 0.82713 0.81354 0.82064 0.77303 0.92184 0.95568 0.94137 0.89283 0.99335 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 7.45 127.77 0.95 1.85 16 2 N -0.59 -16.59 2.89 -819.38 -2.36 -18.96 16 3 C 0.56 16.66 7.54 86.78 0.65 17.31 16 4 O -0.57 -21.76 16.00 -3.89 -0.06 -21.82 16 5 C -0.17 -3.82 5.58 -20.00 -0.11 -3.93 16 6 C -0.02 -0.39 9.72 22.73 0.22 -0.17 16 7 C -0.14 -2.20 9.60 22.32 0.21 -1.98 16 8 C 0.06 0.98 6.28 42.57 0.27 1.24 16 9 C 0.33 4.06 5.54 71.24 0.39 4.46 16 10 F -0.20 -2.98 17.25 44.97 0.78 -2.20 16 11 F -0.20 -2.90 17.25 44.97 0.78 -2.12 16 12 N -0.46 -8.04 10.23 -182.82 -1.87 -9.91 16 13 C 0.12 2.13 8.81 85.02 0.75 2.88 16 14 C 0.15 5.38 3.08 46.18 0.14 5.53 16 15 H 0.09 3.62 7.04 -2.38 -0.02 3.60 16 16 C 0.13 5.17 6.87 86.73 0.60 5.77 16 17 N -0.62 -30.00 3.39 -692.00 -2.35 -32.35 16 18 C -0.24 -12.46 10.27 84.03 0.86 -11.59 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 21 N -0.95 -53.81 10.09 21.65 0.22 -53.59 16 22 Si 0.98 43.51 29.55 68.60 2.03 45.53 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.13 6.37 5.62 86.85 0.49 6.86 16 27 C 0.08 3.06 3.98 31.98 0.13 3.19 16 28 H 0.08 2.71 6.36 -2.39 -0.02 2.70 16 29 O -0.57 -20.46 13.47 -148.98 -2.01 -22.47 16 30 H 0.10 1.38 6.60 -2.39 -0.02 1.36 16 31 H 0.10 1.52 5.21 -2.39 -0.01 1.50 16 32 H 0.08 1.66 6.37 -2.39 -0.02 1.64 16 33 H 0.16 2.97 7.86 -2.91 -0.02 2.95 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.16 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.21 2.82 4.04 -2.91 -0.01 2.81 16 37 H 0.06 2.04 6.61 -2.39 -0.02 2.02 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.09 4.65 5.87 -2.38 -0.01 4.64 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.39 10.81 9.11 -74.05 -0.67 10.14 16 Total: -1.00 -71.92 350.93 1.60 -70.32 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.43 Total: 19.11 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 6.02 Total: 28.46 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -6.37 Total: -114.81 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -2.07 Total: -44.29 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.55 Total: -4.32 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -71.92 1.60 -70.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047402054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.886 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds