Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99710 * 2 1 4 4 O 1.21543 * 119.99756 * 175.11378 * 3 2 1 5 5 C 1.47838 * 119.99662 * 355.11721 * 3 2 1 6 6 C 1.40020 * 120.56284 * 300.83718 * 5 3 2 7 7 C 1.38357 * 118.29096 * 179.73952 * 6 5 3 8 8 C 1.38357 * 119.30218 * 0.51424 * 7 6 5 9 9 N 1.31929 * 121.07597 * 359.74619 * 8 7 6 10 10 C 1.31686 * 121.88142 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.71805 * 180.02562 * 10 9 8 12 12 F 1.39902 * 109.46990 * 21.44553 * 11 10 9 13 13 F 1.39898 * 109.47599 * 141.44875 * 11 10 9 14 14 C 1.46495 * 120.00398 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.88739 * 183.88287 * 14 2 1 16 16 C 1.55134 * 110.93699 * 307.95621 * 14 2 1 17 17 N 1.47421 * 104.72177 * 155.28813 * 16 14 2 18 18 C 1.36933 * 125.64939 * 155.81528 * 17 16 14 19 19 H 1.08002 * 120.00427 * 5.06743 * 18 17 16 20 20 C 1.38818 * 120.00112 * 185.06820 * 18 17 16 21 21 N 1.31619 * 119.99991 * 5.97145 * 20 18 17 22 22 Si 1.86800 * 119.99858 * 185.96851 * 20 18 17 23 23 H 1.48504 * 109.47234 * 265.00255 * 22 20 18 24 24 H 1.48504 * 109.47125 * 145.00338 * 22 20 18 25 25 H 1.48506 * 109.47124 * 25.00638 * 22 20 18 26 26 C 1.47030 * 108.70320 * 335.55421 * 17 16 14 27 27 C 1.54323 * 107.26974 * 1.28586 * 26 17 16 28 28 H 1.08997 * 110.71885 * 263.83001 * 27 26 17 29 29 O 1.42895 * 110.71743 * 140.73334 * 27 26 17 30 30 H 1.08999 * 109.47016 * 275.42105 * 1 2 3 31 31 H 1.08993 * 109.47641 * 35.42338 * 1 2 3 32 32 H 1.09002 * 109.46881 * 155.42737 * 1 2 3 33 33 H 1.08004 * 120.85603 * 359.97438 * 6 5 3 34 34 H 1.07994 * 120.35066 * 180.26054 * 7 6 5 35 35 H 1.07997 * 119.46265 * 179.76825 * 8 7 6 36 36 H 1.09001 * 109.46964 * 261.45349 * 11 10 9 37 37 H 1.08999 * 110.49676 * 36.44782 * 16 14 2 38 38 H 1.09001 * 110.34199 * 274.05354 * 16 14 2 39 39 H 0.97003 * 119.99857 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.88194 * 120.70448 * 26 17 16 41 41 H 1.08994 * 109.87792 * 241.71208 * 26 17 16 42 42 H 0.96707 * 113.99719 * 61.45530 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3510 1.1692 0.0897 5 6 1.4035 2.4452 -0.1090 6 6 0.5915 2.7069 -1.2192 7 6 -0.0796 3.9158 -1.2704 8 6 0.0800 4.8231 -0.2382 9 7 0.8564 4.5514 0.7934 10 6 1.5112 3.4130 0.8903 11 6 2.3844 3.1533 2.0907 12 9 1.9824 3.9779 3.1470 13 9 2.2643 1.8131 2.4737 14 6 2.1976 -1.2686 -0.0006 15 1 3.2717 -1.0971 0.0685 16 6 1.7030 -2.1949 1.1415 17 7 2.0281 -3.5585 0.6852 18 6 2.2187 -4.6466 1.4943 19 1 2.0536 -4.5639 2.5584 20 6 2.6242 -5.8561 0.9469 21 7 2.9389 -5.9284 -0.3291 22 14 2.7235 -7.3810 2.0213 23 1 4.1127 -7.5460 2.5195 24 1 2.3384 -8.5737 1.2247 25 1 1.7982 -7.2356 3.1738 26 6 2.1074 -3.5580 -0.7830 27 6 1.8484 -2.1118 -1.2553 28 1 0.8025 -1.9778 -1.5313 29 8 2.7049 -1.7761 -2.3488 30 1 -0.3633 0.0971 1.0231 31 1 -0.3634 0.8374 -0.5956 32 1 -0.3633 -0.9346 -0.4274 33 1 0.4886 1.9823 -2.0134 34 1 -0.7180 4.1504 -2.1092 35 1 -0.4396 5.7690 -0.2773 36 1 3.4228 3.3673 1.8378 37 1 0.6273 -2.0878 1.2809 38 1 2.2309 -1.9689 2.0680 39 1 3.2219 -6.7737 -0.7116 40 1 3.0993 -3.8798 -1.1007 41 1 1.3514 -4.2262 -1.1952 42 1 2.5768 -2.3280 -3.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047450194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = -95.239631 kcal Electronic energy + Delta-G solvation = -30890.978094 eV Core-core repulsion = 26315.706319 eV Total energy + Delta-G solvation = -4575.271775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.08845 -47.09479 -41.05605 -39.51170 -37.82934 -35.33495 -34.87038 -33.24266 -32.64285 -31.73977 -28.70069 -27.49413 -27.22137 -26.68333 -25.03147 -24.08183 -22.79678 -21.05655 -20.47698 -19.27120 -18.04594 -17.85661 -17.67063 -17.45707 -17.12177 -16.72510 -16.40022 -15.99057 -15.55378 -14.96163 -14.76560 -14.37504 -14.30743 -14.05572 -13.94201 -13.79187 -13.42018 -13.30036 -13.12388 -12.87969 -12.77264 -12.64888 -12.49165 -12.31755 -12.01513 -11.58940 -11.42869 -11.25848 -10.85888 -10.82538 -10.42987 -10.24145 -10.16077 -10.05656 -9.88095 -9.81588 -9.57379 -9.33698 -8.76067 -8.45125 -6.94572 -5.78338 -3.15751 0.27613 0.62549 2.53237 2.86953 3.07131 3.21492 3.37154 3.42710 3.44474 3.85809 4.02202 4.17848 4.33293 4.42803 4.52222 4.62132 4.68162 4.87308 4.89232 4.93091 5.03058 5.17923 5.33762 5.41692 5.47969 5.52311 5.54869 5.58331 5.70950 5.82104 5.95096 6.01417 6.05259 6.45561 6.55359 6.78119 7.20407 7.28549 7.40113 7.49517 7.69492 8.07941 8.12517 8.16335 9.10479 9.71291 10.33915 11.31381 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.003165 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.410828 B = 8845.800504 C = 9704.297170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.566 3.434 4 O -0.522 6.522 5 C -0.136 4.136 6 C -0.045 4.045 7 C -0.158 4.158 8 C 0.115 3.885 9 N -0.455 5.455 10 C 0.092 3.908 11 C 0.324 3.676 12 F -0.186 7.186 13 F -0.182 7.182 14 C 0.135 3.865 15 H 0.118 0.882 16 C 0.133 3.867 17 N -0.598 5.598 18 C -0.231 4.231 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.147 3.853 27 C 0.066 3.934 28 H 0.055 0.945 29 O -0.561 6.561 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.135 0.865 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 20.164 -4.287 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.351 3.649 4 O -0.398 6.398 5 C -0.142 4.142 6 C -0.071 4.071 7 C -0.177 4.177 8 C -0.043 4.043 9 N -0.163 5.163 10 C -0.048 4.048 11 C 0.270 3.730 12 F -0.167 7.167 13 F -0.163 7.163 14 C 0.032 3.968 15 H 0.136 0.864 16 C 0.005 3.995 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.021 3.979 27 C 0.005 3.995 28 H 0.072 0.928 29 O -0.366 6.366 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.186 0.814 36 H 0.152 0.848 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.676 20.965 -3.120 22.543 hybrid contribution -0.534 -1.936 -0.619 2.102 sum -8.210 19.029 -3.739 21.059 Atomic orbital electron populations 1.21941 0.79767 1.03327 1.02301 1.47588 1.06847 1.05576 1.71806 1.17874 0.87072 0.83013 0.76919 1.90816 1.13046 1.86688 1.49233 1.20770 0.99950 0.96479 0.96965 1.21755 0.91870 0.97202 0.96247 1.22255 1.00566 0.94217 1.00681 1.22984 0.93633 0.99398 0.88296 1.67365 1.06160 1.18148 1.24616 1.21733 0.96843 0.90696 0.95505 1.20118 0.98906 0.73220 0.80785 1.93024 1.92769 1.71925 1.59022 1.93084 1.97384 1.34210 1.91610 1.22533 0.98563 0.80690 0.95039 0.86439 1.21826 0.97420 0.85308 0.94907 1.44239 1.83198 1.03345 1.01735 1.19080 1.39413 0.87026 0.90390 0.90106 1.24836 1.00801 0.98176 0.96430 1.69923 1.50643 1.24984 1.11203 0.86060 0.77826 0.82462 0.79168 1.21481 1.21617 1.20538 1.21923 1.02419 0.89015 0.84515 1.23537 0.91978 0.97403 0.86560 0.92770 1.86488 1.63566 1.61258 1.25275 0.92057 0.91558 0.89909 0.83244 0.83348 0.81446 0.84793 0.95552 0.93037 0.93632 0.90629 0.94618 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.78 59.85 0.53 1.34 16 2 N -0.59 -9.10 2.91 -172.46 -0.50 -9.60 16 3 C 0.57 9.00 5.06 -12.33 -0.06 8.94 16 4 O -0.52 -10.08 15.56 5.33 0.08 -10.00 16 5 C -0.14 -1.70 4.82 -104.82 -0.51 -2.21 16 6 C -0.04 -0.40 7.83 -38.87 -0.30 -0.71 16 7 C -0.16 -1.03 10.10 -39.49 -0.40 -1.43 16 8 C 0.11 0.88 11.17 -17.47 -0.20 0.69 16 9 N -0.45 -5.14 9.85 -9.14 -0.09 -5.23 16 10 C 0.09 1.16 6.61 -82.17 -0.54 0.62 16 11 C 0.32 4.26 5.05 36.01 0.18 4.44 16 12 F -0.19 -2.52 16.97 2.25 0.04 -2.48 16 13 F -0.18 -2.84 14.81 2.25 0.03 -2.81 16 14 C 0.14 2.57 3.19 -65.66 -0.21 2.36 16 15 H 0.12 2.61 7.02 -51.93 -0.36 2.24 16 16 C 0.13 2.75 6.79 -2.41 -0.02 2.73 16 17 N -0.60 -14.99 3.39 -169.93 -0.58 -15.56 16 18 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 19 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 20 C -0.01 -0.16 5.46 -17.43 -0.10 -0.26 16 21 N -0.92 -26.41 10.42 55.49 0.58 -25.83 16 22 Si 0.91 21.81 29.56 -169.99 -5.02 16.78 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.15 3.43 5.20 -3.06 -0.02 3.41 16 27 C 0.07 1.21 3.86 -24.90 -0.10 1.12 16 28 H 0.05 0.88 6.46 -51.93 -0.34 0.55 16 29 O -0.56 -10.00 13.40 -35.23 -0.47 -10.47 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.60 4.92 -51.93 -0.26 0.35 16 32 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 33 H 0.15 1.13 7.65 -52.48 -0.40 0.72 16 34 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 35 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.03 0.51 6.96 -51.93 -0.36 0.15 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.08 2.02 6.85 -51.93 -0.36 1.66 16 41 H 0.04 0.89 7.92 -51.93 -0.41 0.47 16 42 H 0.37 5.12 9.11 45.56 0.42 5.53 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -34.78 352.34 -6.57 -41.35 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.06 Total: 3.99 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -1.89 Total: 14.55 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.59 Total: -56.22 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.39 Total: -20.47 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.07 Total: -5.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.78 -6.57 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047450194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.890 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds