Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47172 * 2 1 4 4 C 1.35632 * 125.67745 * 265.52367 * 3 2 1 5 5 C 1.35517 * 108.85274 * 179.86412 * 4 3 2 6 6 Cl 1.73598 * 126.07250 * 180.15314 * 5 4 3 7 7 C 1.39888 * 107.84984 * 0.39320 * 5 4 3 8 8 C 1.37638 * 125.67668 * 85.82594 * 3 2 1 9 9 C 1.46672 * 126.22421 * 359.97438 * 8 3 2 10 10 O 1.21704 * 119.99602 * 352.84546 * 9 8 3 11 11 N 1.34773 * 120.00185 * 172.85005 * 9 8 3 12 12 C 1.46498 * 119.99902 * 354.60897 * 11 9 8 13 13 C 1.46497 * 120.00078 * 174.60715 * 11 9 8 14 14 H 1.09002 * 110.88689 * 357.57275 * 13 11 9 15 15 C 1.54912 * 111.00531 * 121.45134 * 13 11 9 16 16 N 1.47425 * 104.83144 * 155.08401 * 15 13 11 17 17 C 1.36936 * 125.64599 * 155.90901 * 16 15 13 18 18 H 1.07998 * 120.00191 * 5.15871 * 17 16 15 19 19 C 1.38816 * 119.99592 * 185.15911 * 17 16 15 20 20 N 1.31620 * 120.00414 * 5.44355 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 185.44109 * 19 17 16 22 22 H 1.48502 * 109.47106 * 94.99961 * 21 19 17 23 23 H 1.48504 * 109.47001 * 214.99758 * 21 19 17 24 24 H 1.48502 * 109.47047 * 334.99803 * 21 19 17 25 25 C 1.47022 * 108.70410 * 335.87196 * 16 15 13 26 26 C 1.54325 * 107.27211 * 1.06324 * 25 16 15 27 27 H 1.09008 * 110.71770 * 263.82718 * 26 25 16 28 28 O 1.42895 * 110.72075 * 140.55579 * 26 25 16 29 29 H 1.08996 * 109.46741 * 175.02523 * 1 2 3 30 30 H 1.08996 * 109.47126 * 295.02741 * 1 2 3 31 31 H 1.09002 * 109.46954 * 55.02560 * 1 2 3 32 32 H 1.09002 * 109.47076 * 119.99787 * 2 1 3 33 33 H 1.08998 * 109.47269 * 239.99926 * 2 1 3 34 34 H 1.08006 * 125.57032 * 359.97438 * 4 3 2 35 35 H 1.07995 * 126.45102 * 179.72519 * 7 5 4 36 36 H 1.09000 * 109.47325 * 85.57387 * 12 11 9 37 37 H 1.09004 * 109.46865 * 205.57179 * 12 11 9 38 38 H 1.09007 * 109.47049 * 325.56964 * 12 11 9 39 39 H 1.09000 * 110.36594 * 273.92197 * 15 13 11 40 40 H 1.09000 * 110.36218 * 36.13834 * 15 13 11 41 41 H 0.96997 * 119.99826 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.87968 * 120.47730 * 25 16 15 43 43 H 1.08994 * 109.88539 * 241.48497 * 25 16 15 44 44 H 0.96699 * 114.00288 * 66.48143 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3632 2.0984 -1.0984 5 6 2.7638 3.3325 -0.7076 6 17 3.2977 4.6123 -1.7520 7 6 2.6760 3.3902 0.6873 8 6 2.2093 2.1652 1.1151 9 6 1.9612 1.7696 2.5055 10 8 1.4255 0.7041 2.7487 11 7 2.3263 2.5859 3.5138 12 6 3.0758 3.8119 3.2288 13 6 1.9737 2.2473 4.8948 14 1 1.3834 1.3317 4.9318 15 6 3.2407 2.1270 5.7779 16 7 2.7725 2.4003 7.1488 17 6 3.3805 1.9743 8.2995 18 1 4.3269 1.4564 8.2504 19 6 2.7802 2.2083 9.5291 20 7 1.5786 2.7427 9.5839 21 14 3.6778 1.7646 11.1061 22 1 4.3889 2.9609 11.6243 23 1 2.6978 1.2943 12.1180 24 1 4.6602 0.6858 10.8297 25 6 1.5453 3.2067 7.0760 26 6 1.2255 3.4203 5.5814 27 1 1.6134 4.3792 5.2373 28 8 -0.1811 3.3290 5.3473 29 1 -0.3633 -1.0238 -0.0891 30 1 -0.3633 0.4347 0.9311 31 1 -0.3633 0.5891 -0.8421 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.3230 1.7443 -2.1180 35 1 2.9270 4.2348 1.3117 36 1 2.3802 4.6141 2.9823 37 1 3.6590 4.0934 4.1057 38 1 3.7461 3.6405 2.3864 39 1 3.6550 1.1209 5.7120 40 1 3.9851 2.8636 5.4755 41 1 1.1594 2.9065 10.4432 42 1 0.7242 2.6765 7.5586 43 1 1.7038 4.1679 7.5647 44 1 -0.6948 4.0394 5.7555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047629574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 15.728721 kcal Electronic energy + Delta-G solvation = -28300.780514 eV Core-core repulsion = 24282.117368 eV Total energy + Delta-G solvation = -4018.663146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.79195 -39.53988 -37.71864 -36.59412 -35.50941 -34.96164 -33.97110 -32.02106 -30.05269 -29.40911 -28.26185 -27.37688 -26.84242 -24.53607 -23.75547 -22.49402 -21.09924 -20.45627 -19.79658 -19.18109 -17.43796 -17.10808 -16.92218 -16.12417 -15.78759 -15.65249 -14.91267 -14.78834 -14.60675 -14.32479 -14.06599 -13.97708 -13.53065 -13.31007 -13.02252 -12.95356 -12.88647 -12.69564 -12.36618 -12.28958 -12.04294 -11.63053 -11.47978 -11.41988 -11.36861 -11.24894 -10.94638 -10.86674 -10.79187 -10.15185 -9.96240 -9.88017 -9.83843 -9.30202 -8.86674 -8.75353 -8.52950 -8.31020 -6.93540 -5.77537 -3.15212 1.29627 1.92636 2.27270 2.57980 3.25023 3.30764 3.37162 3.42544 3.44618 4.39751 4.44410 4.50943 4.64763 4.69036 4.82761 4.99118 5.07071 5.12247 5.20784 5.33162 5.40018 5.44204 5.46171 5.57065 5.61647 5.62825 5.69804 5.76859 5.82436 5.97703 6.01984 6.10520 6.25773 6.45627 6.55411 6.59340 6.81094 6.89533 7.23879 7.48093 7.51778 7.71178 8.14336 8.18216 8.23402 9.11173 9.71861 10.34704 11.32040 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002741 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.994865 B =10211.031069 C =10753.549899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.400 5.400 4 C 0.028 3.972 5 C -0.124 4.124 6 Cl -0.054 7.054 7 C -0.151 4.151 8 C -0.023 4.023 9 C 0.587 3.413 10 O -0.542 6.542 11 N -0.584 5.584 12 C 0.053 3.947 13 C 0.137 3.863 14 H 0.116 0.884 15 C 0.131 3.869 16 N -0.597 5.597 17 C -0.232 4.232 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.148 3.852 26 C 0.067 3.933 27 H 0.056 0.944 28 O -0.561 6.561 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 1.816 -22.591 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.109 4.109 5 C -0.157 4.157 6 Cl -0.026 7.026 7 C -0.177 4.177 8 C -0.137 4.137 9 C 0.376 3.624 10 O -0.421 6.421 11 N -0.315 5.315 12 C -0.090 4.090 13 C 0.033 3.967 14 H 0.134 0.866 15 C 0.004 3.996 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.022 3.978 26 C 0.007 3.993 27 H 0.074 0.926 28 O -0.365 6.365 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.192 0.808 35 H 0.190 0.810 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.419 0.437 -22.596 22.604 hybrid contribution 0.326 0.636 0.981 1.214 sum 0.744 1.073 -21.614 21.654 Atomic orbital electron populations 1.22092 0.93590 1.03068 1.03490 1.22105 0.96391 0.78661 1.05019 1.44040 1.46501 1.12060 1.04684 1.21674 1.05410 0.91540 0.92239 1.19956 1.13009 0.91138 0.91614 1.98319 1.89231 1.49188 1.65838 1.22155 1.04488 0.97747 0.93263 1.20087 1.12963 0.92378 0.88271 1.16853 0.78714 0.83873 0.83001 1.90799 1.44171 1.22568 1.84585 1.47348 1.54665 1.23020 1.06425 1.22564 0.96396 0.86567 1.03435 1.22448 0.97159 0.99241 0.77818 0.86567 1.21808 0.93073 0.99046 0.85711 1.44234 1.27754 1.60923 0.99584 1.19077 1.02105 1.32025 0.82762 0.90127 1.24844 0.96523 1.01098 0.97778 1.69929 1.13796 1.49020 1.23920 0.86056 0.78471 0.77946 0.83016 1.21567 1.21655 1.20505 1.21905 0.91168 0.96032 0.88697 1.23509 0.81071 0.96672 0.98063 0.92594 1.86488 1.18121 1.54069 1.77861 0.90577 0.90783 0.92401 0.87386 0.89222 0.80806 0.80981 0.92016 0.89918 0.89302 0.93250 0.95521 0.93616 0.90752 0.94531 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.19 37.16 0.38 -1.19 16 2 C 0.10 0.95 6.10 -4.04 -0.02 0.92 16 3 N -0.40 -4.50 2.76 -112.82 -0.31 -4.81 16 4 C 0.03 0.27 11.35 -16.84 -0.19 0.08 16 5 C -0.12 -1.32 6.66 -39.94 -0.27 -1.59 16 6 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 7 C -0.15 -1.74 8.73 -39.09 -0.34 -2.08 16 8 C -0.02 -0.30 6.73 -81.98 -0.55 -0.85 16 9 C 0.59 9.48 7.62 -12.86 -0.10 9.38 16 10 O -0.54 -10.17 13.60 5.18 0.07 -10.10 16 11 N -0.58 -9.14 2.91 -173.02 -0.50 -9.64 16 12 C 0.05 0.62 7.29 59.85 0.44 1.06 16 13 C 0.14 2.60 3.17 -65.78 -0.21 2.40 16 14 H 0.12 2.56 7.03 -51.93 -0.37 2.20 16 15 C 0.13 2.69 6.79 -2.53 -0.02 2.67 16 16 N -0.60 -14.96 3.39 -170.07 -0.58 -15.54 16 17 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.16 5.46 -17.43 -0.10 -0.26 16 20 N -0.92 -26.47 10.40 55.49 0.58 -25.89 16 21 Si 0.91 21.78 29.56 -169.99 -5.02 16.76 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.15 3.48 5.20 -3.06 -0.02 3.46 16 26 C 0.07 1.27 3.89 -24.90 -0.10 1.17 16 27 H 0.06 0.94 7.09 -51.92 -0.37 0.57 16 28 O -0.56 -10.27 13.39 -35.23 -0.47 -10.74 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.11 1.25 6.74 -51.93 -0.35 0.90 16 33 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.17 1.71 4.40 -52.49 -0.23 1.48 16 36 H 0.06 0.64 7.47 -51.93 -0.39 0.26 16 37 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 38 H 0.09 0.90 5.12 -51.93 -0.27 0.63 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.51 6.32 -51.93 -0.33 0.18 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 2.01 6.87 -51.93 -0.36 1.65 16 43 H 0.04 0.92 7.90 -51.93 -0.41 0.51 16 44 H 0.37 5.25 9.12 45.56 0.42 5.67 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.99 364.76 -8.53 -41.52 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.03 Total: 6.32 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -1.25 Total: 8.68 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.82 Total: -55.89 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.40 Total: -20.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.99 -8.53 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047629574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.252 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds