Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47172 * 2 1 4 4 C 1.35632 * 125.67745 * 265.52367 * 3 2 1 5 5 C 1.35517 * 108.85274 * 179.86412 * 4 3 2 6 6 Cl 1.73598 * 126.07250 * 180.15314 * 5 4 3 7 7 C 1.39888 * 107.84984 * 0.39320 * 5 4 3 8 8 C 1.37638 * 125.67668 * 85.82594 * 3 2 1 9 9 C 1.46672 * 126.22421 * 359.97438 * 8 3 2 10 10 O 1.21704 * 119.99602 * 352.84546 * 9 8 3 11 11 N 1.34773 * 120.00185 * 172.85005 * 9 8 3 12 12 C 1.46498 * 119.99902 * 354.60897 * 11 9 8 13 13 C 1.46497 * 120.00078 * 174.60715 * 11 9 8 14 14 H 1.09002 * 110.88689 * 357.57275 * 13 11 9 15 15 C 1.54912 * 111.00531 * 121.45134 * 13 11 9 16 16 N 1.47425 * 104.83144 * 155.08401 * 15 13 11 17 17 C 1.36936 * 125.64599 * 155.90901 * 16 15 13 18 18 H 1.07998 * 120.00191 * 5.15871 * 17 16 15 19 19 C 1.38816 * 119.99592 * 185.15911 * 17 16 15 20 20 N 1.31620 * 120.00414 * 5.44355 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 185.44109 * 19 17 16 22 22 H 1.48502 * 109.47106 * 94.99961 * 21 19 17 23 23 H 1.48504 * 109.47001 * 214.99758 * 21 19 17 24 24 H 1.48502 * 109.47047 * 334.99803 * 21 19 17 25 25 C 1.47022 * 108.70410 * 335.87196 * 16 15 13 26 26 C 1.54325 * 107.27211 * 1.06324 * 25 16 15 27 27 H 1.09008 * 110.71770 * 263.82718 * 26 25 16 28 28 O 1.42895 * 110.72075 * 140.55579 * 26 25 16 29 29 H 1.08996 * 109.46741 * 175.02523 * 1 2 3 30 30 H 1.08996 * 109.47126 * 295.02741 * 1 2 3 31 31 H 1.09002 * 109.46954 * 55.02560 * 1 2 3 32 32 H 1.09002 * 109.47076 * 119.99787 * 2 1 3 33 33 H 1.08998 * 109.47269 * 239.99926 * 2 1 3 34 34 H 1.08006 * 125.57032 * 359.97438 * 4 3 2 35 35 H 1.07995 * 126.45102 * 179.72519 * 7 5 4 36 36 H 1.09000 * 109.47325 * 85.57387 * 12 11 9 37 37 H 1.09004 * 109.46865 * 205.57179 * 12 11 9 38 38 H 1.09007 * 109.47049 * 325.56964 * 12 11 9 39 39 H 1.09000 * 110.36594 * 273.92197 * 15 13 11 40 40 H 1.09000 * 110.36218 * 36.13834 * 15 13 11 41 41 H 0.96997 * 119.99826 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.87968 * 120.47730 * 25 16 15 43 43 H 1.08994 * 109.88539 * 241.48497 * 25 16 15 44 44 H 0.96699 * 114.00288 * 66.48143 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3632 2.0984 -1.0984 5 6 2.7638 3.3325 -0.7076 6 17 3.2977 4.6123 -1.7520 7 6 2.6760 3.3902 0.6873 8 6 2.2093 2.1652 1.1151 9 6 1.9612 1.7696 2.5055 10 8 1.4255 0.7041 2.7487 11 7 2.3263 2.5859 3.5138 12 6 3.0758 3.8119 3.2288 13 6 1.9737 2.2473 4.8948 14 1 1.3834 1.3317 4.9318 15 6 3.2407 2.1270 5.7779 16 7 2.7725 2.4003 7.1488 17 6 3.3805 1.9743 8.2995 18 1 4.3269 1.4564 8.2504 19 6 2.7802 2.2083 9.5291 20 7 1.5786 2.7427 9.5839 21 14 3.6778 1.7646 11.1061 22 1 4.3889 2.9609 11.6243 23 1 2.6978 1.2943 12.1180 24 1 4.6602 0.6858 10.8297 25 6 1.5453 3.2067 7.0760 26 6 1.2255 3.4203 5.5814 27 1 1.6134 4.3792 5.2373 28 8 -0.1811 3.3290 5.3473 29 1 -0.3633 -1.0238 -0.0891 30 1 -0.3633 0.4347 0.9311 31 1 -0.3633 0.5891 -0.8421 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.3230 1.7443 -2.1180 35 1 2.9270 4.2348 1.3117 36 1 2.3802 4.6141 2.9823 37 1 3.6590 4.0934 4.1057 38 1 3.7461 3.6405 2.3864 39 1 3.6550 1.1209 5.7120 40 1 3.9851 2.8636 5.4755 41 1 1.1594 2.9065 10.4432 42 1 0.7242 2.6765 7.5586 43 1 1.7038 4.1679 7.5647 44 1 -0.6948 4.0394 5.7555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047629574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -7.156383 kcal Electronic energy + Delta-G solvation = -28301.772886 eV Core-core repulsion = 24282.117368 eV Total energy + Delta-G solvation = -4019.655518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68810 -40.85908 -39.21084 -37.36067 -36.78939 -36.59077 -34.91020 -33.85800 -31.32763 -30.25647 -29.84453 -28.80267 -28.10689 -26.37122 -24.56680 -23.70194 -22.30309 -21.98131 -21.13950 -20.23836 -19.01981 -18.59719 -18.18582 -17.54327 -16.96471 -16.78604 -16.48992 -15.80402 -15.76107 -15.74124 -15.28245 -15.14073 -14.67557 -14.50742 -14.35703 -14.22034 -14.07046 -13.98727 -13.65238 -13.60865 -13.20113 -13.04384 -13.00361 -12.75563 -12.62916 -12.38322 -12.30264 -12.17633 -12.06659 -11.89172 -11.76304 -11.56928 -11.09309 -10.87290 -10.79252 -9.81439 -9.68833 -9.22928 -8.95161 -7.87192 -5.27582 0.33881 1.13873 1.46169 1.46326 1.48014 1.56383 1.59017 2.19075 2.24587 2.48196 3.10997 3.32364 3.45480 3.56615 3.78098 3.82334 3.97560 4.04546 4.08487 4.09476 4.20625 4.21865 4.35864 4.42933 4.48412 4.48722 4.58616 4.71346 4.74857 4.81411 4.87390 4.97482 5.01036 5.18564 5.29657 5.34769 5.46702 5.52455 5.67077 5.74248 6.07646 6.13706 6.30500 6.84123 7.01860 7.03898 7.68363 8.31076 9.20673 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002741 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.994865 B =10211.031069 C =10753.549899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.404 5.404 4 C 0.051 3.949 5 C -0.141 4.141 6 Cl -0.044 7.044 7 C -0.138 4.138 8 C -0.057 4.057 9 C 0.581 3.419 10 O -0.581 6.581 11 N -0.584 5.584 12 C 0.047 3.953 13 C 0.151 3.849 14 H 0.078 0.922 15 C 0.133 3.867 16 N -0.619 5.619 17 C -0.247 4.247 18 H 0.085 0.915 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.158 3.842 26 C 0.087 3.913 27 H 0.089 0.911 28 O -0.572 6.572 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.211 0.789 35 H 0.187 0.813 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.249 0.751 42 H 0.032 0.968 43 H 0.016 0.984 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 2.692 -25.389 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.077 5.077 4 C -0.087 4.087 5 C -0.173 4.173 6 Cl -0.016 7.016 7 C -0.164 4.164 8 C -0.170 4.170 9 C 0.372 3.628 10 O -0.463 6.463 11 N -0.315 5.315 12 C -0.093 4.093 13 C 0.046 3.954 14 H 0.096 0.904 15 C 0.007 3.993 16 N -0.347 5.347 17 C -0.375 4.375 18 H 0.103 0.897 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.193 1.193 25 C 0.032 3.968 26 C 0.027 3.973 27 H 0.107 0.893 28 O -0.379 6.379 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.228 0.772 35 H 0.204 0.796 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.710 1.340 -25.424 25.517 hybrid contribution -0.076 0.361 1.722 1.761 sum 1.634 1.700 -23.702 23.819 Atomic orbital electron populations 1.22028 0.93722 1.04012 1.01788 1.22207 0.96247 0.78193 1.05675 1.44227 1.46354 1.12510 1.04569 1.22290 1.02513 0.90827 0.93080 1.20056 1.13827 0.91982 0.91475 1.98326 1.89151 1.48761 1.65323 1.22348 1.02785 0.97206 0.94062 1.19718 1.16169 0.93822 0.87304 1.17316 0.77943 0.83271 0.84293 1.90776 1.45920 1.24285 1.85315 1.47309 1.55092 1.24308 1.04752 1.22854 0.96846 0.85330 1.04310 1.21896 0.95804 0.97836 0.79892 0.90354 1.21908 0.94220 0.99140 0.84060 1.44494 1.28185 1.61198 1.00782 1.19463 1.02427 1.31684 0.83951 0.89685 1.25695 0.97383 1.01590 1.00879 1.70150 1.15133 1.50230 1.24097 0.85022 0.77285 0.77931 0.78834 1.20991 1.22228 1.19288 1.21660 0.89460 0.94047 0.91641 1.23268 0.81563 0.97940 0.94548 0.89341 1.86459 1.18029 1.55532 1.77879 0.88908 0.94784 0.91046 0.90012 0.85208 0.77243 0.79648 0.89998 0.89770 0.87282 0.94241 0.92788 0.94212 0.94988 0.96581 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.19 71.98 0.73 -2.14 16 2 C 0.10 1.71 6.10 86.38 0.53 2.24 16 3 N -0.40 -8.27 2.76 -510.85 -1.41 -9.68 16 4 C 0.05 0.79 11.35 83.48 0.95 1.74 16 5 C -0.14 -2.54 6.66 22.04 0.15 -2.39 16 6 Cl -0.04 -0.71 29.30 -2.72 -0.08 -0.79 16 7 C -0.14 -2.81 8.73 22.59 0.20 -2.62 16 8 C -0.06 -1.44 6.73 40.35 0.27 -1.17 16 9 C 0.58 18.90 7.62 86.45 0.66 19.56 16 10 O -0.58 -22.87 13.60 -4.36 -0.06 -22.93 16 11 N -0.58 -17.99 2.91 -819.52 -2.38 -20.37 16 12 C 0.05 1.00 7.29 127.77 0.93 1.93 16 13 C 0.15 5.84 3.17 46.38 0.15 5.99 16 14 H 0.08 3.65 7.03 -2.39 -0.02 3.64 16 15 C 0.13 5.52 6.79 86.86 0.59 6.11 16 16 N -0.62 -31.80 3.39 -691.98 -2.35 -34.15 16 17 C -0.25 -13.78 10.27 84.03 0.86 -12.92 16 18 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 19 C -0.06 -3.51 5.46 84.86 0.46 -3.04 16 20 N -0.95 -56.46 10.40 21.65 0.23 -56.24 16 21 Si 0.98 45.45 29.56 68.60 2.03 47.47 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C 0.16 7.70 5.20 86.73 0.45 8.16 16 26 C 0.09 3.30 3.89 31.78 0.12 3.42 16 27 H 0.09 2.80 7.09 -2.38 -0.02 2.78 16 28 O -0.57 -21.05 13.39 -148.98 -1.99 -23.04 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 0.89 7.50 -2.39 -0.02 0.87 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.92 6.74 -2.39 -0.02 1.90 16 33 H 0.13 1.22 8.12 -2.39 -0.02 1.21 16 34 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.19 3.08 4.40 -2.91 -0.01 3.07 16 36 H 0.08 1.44 7.47 -2.39 -0.02 1.42 16 37 H 0.08 1.78 6.34 -2.39 -0.02 1.76 16 38 H 0.11 1.89 5.12 -2.38 -0.01 1.88 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.98 6.32 -2.39 -0.02 1.97 16 41 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.03 1.82 6.87 -2.38 -0.02 1.81 16 43 H 0.02 0.83 7.90 -2.39 -0.02 0.82 16 44 H 0.39 10.92 9.12 -74.06 -0.68 10.25 16 Total: -1.00 -75.39 364.76 1.40 -73.98 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.37 Total: 20.87 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 7.05 Total: 24.87 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -5.92 Total: -120.44 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.05 Total: -45.97 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -75.39 1.40 -73.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047629574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.829 kcal (2) G-P(sol) polarization free energy of solvation -75.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds