Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47538 * 2 1 4 4 C 1.35624 * 125.67773 * 261.89857 * 3 2 1 5 5 C 1.35522 * 108.85588 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 126.07696 * 179.97438 * 5 4 3 7 7 C 1.39888 * 107.84644 * 359.77595 * 5 4 3 8 8 C 1.37639 * 125.67548 * 81.88985 * 3 2 1 9 9 C 1.46668 * 126.22396 * 359.96792 * 8 3 2 10 10 O 1.21698 * 120.00216 * 5.71894 * 9 8 3 11 11 N 1.34778 * 119.99960 * 185.72211 * 9 8 3 12 12 C 1.46503 * 119.99596 * 185.11420 * 11 9 8 13 13 C 1.53006 * 109.46678 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.68071 * 300.76879 * 13 12 11 15 15 C 1.53295 * 109.68261 * 180.24955 * 13 12 11 16 16 O 1.42956 * 109.22750 * 187.93922 * 15 13 12 17 17 C 1.42960 * 114.16711 * 62.58113 * 16 15 13 18 18 C 1.53296 * 109.22229 * 297.42292 * 17 16 15 19 19 N 1.47147 * 109.68074 * 61.28796 * 13 12 11 20 20 C 1.36939 * 120.98635 * 350.28011 * 19 13 12 21 21 H 1.08000 * 119.99437 * 31.08559 * 20 19 13 22 22 C 1.38808 * 120.00474 * 211.08279 * 20 19 13 23 23 N 1.31622 * 119.99868 * 10.31742 * 22 20 19 24 24 Si 1.86803 * 119.99972 * 190.31197 * 22 20 19 25 25 H 1.48496 * 109.47054 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46823 * 120.00518 * 24 22 20 27 27 H 1.48500 * 109.47176 * 240.00173 * 24 22 20 28 28 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47010 * 300.00650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 60.00112 * 1 2 3 31 31 H 1.09000 * 109.47338 * 240.00022 * 2 1 3 32 32 H 1.09004 * 109.46990 * 119.99887 * 2 1 3 33 33 H 1.08006 * 125.57461 * 359.97438 * 4 3 2 34 34 H 1.08002 * 126.45128 * 180.23295 * 7 5 4 35 35 H 0.96999 * 119.99832 * 5.10917 * 11 9 8 36 36 H 1.09002 * 109.47090 * 60.00259 * 12 11 9 37 37 H 1.08994 * 109.47042 * 299.99619 * 12 11 9 38 38 H 1.09005 * 109.51128 * 307.86441 * 15 13 12 39 39 H 1.09000 * 109.51052 * 67.96058 * 15 13 12 40 40 H 1.08998 * 109.51233 * 57.34058 * 17 16 15 41 41 H 1.08997 * 109.51532 * 177.49799 * 17 16 15 42 42 H 1.09003 * 109.68351 * 172.02532 * 18 17 16 43 43 H 1.09007 * 109.68565 * 292.54197 * 18 17 16 44 44 H 0.96994 * 120.00061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4285 2.0752 -1.0907 5 6 2.8084 3.3168 -0.7025 6 17 3.4095 4.5728 -1.7392 7 6 2.6257 3.4079 0.6814 8 6 2.1373 2.1906 1.1069 9 6 1.7994 1.8268 2.4870 10 8 1.4678 0.6862 2.7518 11 7 1.8559 2.7557 3.4619 12 6 1.6279 2.3687 4.8564 13 6 1.7486 3.6019 5.7540 14 1 2.7414 4.0387 5.6460 15 6 1.5170 3.2014 7.2155 16 8 1.4477 4.3801 8.0213 17 6 0.3608 5.2494 7.6946 18 6 0.5331 5.7548 6.2577 19 7 0.7277 4.5919 5.3760 20 6 -0.0189 4.4356 4.2387 21 1 -0.2585 3.4447 3.8821 22 6 -0.4677 5.5506 3.5443 23 7 -0.0131 6.7462 3.8547 24 14 -1.7167 5.3542 2.1692 25 1 -2.0659 3.9187 2.0190 26 1 -2.9402 6.1291 2.4976 27 1 -1.1374 5.8588 0.8985 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4490 1.6997 -2.1032 34 1 2.8309 4.2688 1.3004 35 1 2.0476 3.6803 3.2402 36 1 2.3708 1.6288 5.1542 37 1 0.6298 1.9423 4.9565 38 1 0.5811 2.6487 7.2975 39 1 2.3411 2.5745 7.5561 40 1 -0.5793 4.7041 7.7784 41 1 0.3534 6.0967 8.3802 42 1 -0.3584 6.3022 5.9516 43 1 1.4032 6.4090 6.2004 44 1 -0.3264 7.5252 3.3693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051249534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -9.570219 kcal Electronic energy + Delta-G solvation = -28838.656641 eV Core-core repulsion = 24818.896451 eV Total energy + Delta-G solvation = -4019.760190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37518 -39.04853 -38.13481 -36.30073 -35.37155 -34.15969 -33.46957 -31.66496 -30.52238 -29.32490 -29.05296 -27.20248 -25.51681 -23.61578 -23.46186 -22.39783 -21.47248 -20.45255 -19.77120 -19.17815 -17.83017 -16.65605 -15.93723 -15.88657 -15.51942 -15.22063 -14.98563 -14.61261 -14.48564 -14.25601 -14.08357 -13.83726 -13.59769 -13.53109 -13.05933 -12.97381 -12.72863 -12.62265 -12.46738 -12.07269 -11.92559 -11.58726 -11.31450 -11.23165 -11.04779 -10.89522 -10.76368 -10.72453 -10.42807 -10.23537 -10.06487 -9.69496 -9.60626 -9.01043 -8.71022 -8.56695 -8.41990 -8.03896 -6.74242 -5.91360 -3.41313 1.61202 2.21910 2.59383 2.93759 3.29614 3.39916 3.40502 3.69424 3.81670 4.34713 4.51597 4.66748 4.88433 5.00925 5.07252 5.16008 5.24666 5.27676 5.33478 5.55147 5.59037 5.65744 5.69902 5.82235 5.86748 5.97770 6.01834 6.12901 6.13673 6.13933 6.19771 6.32049 6.50191 6.58698 6.71942 6.89597 7.00985 7.06251 7.14317 7.48688 7.70102 7.85174 8.10703 8.28070 8.67364 9.04971 9.65223 10.24005 11.15109 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.004289 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.313344 B = 6527.446969 C = 7363.022755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.403 5.403 4 C 0.023 3.977 5 C -0.121 4.121 6 Cl -0.056 7.056 7 C -0.124 4.124 8 C -0.024 4.024 9 C 0.582 3.418 10 O -0.566 6.566 11 N -0.679 5.679 12 C 0.139 3.861 13 C 0.124 3.876 14 H 0.042 0.958 15 C 0.057 3.943 16 O -0.392 6.392 17 C 0.035 3.965 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.073 0.927 22 C 0.014 3.986 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.285 1.285 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.418 0.582 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.030 0.970 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -9.165 -5.787 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.077 5.077 4 C -0.114 4.114 5 C -0.154 4.154 6 Cl -0.028 7.028 7 C -0.150 4.150 8 C -0.137 4.137 9 C 0.369 3.631 10 O -0.449 6.449 11 N -0.330 5.330 12 C 0.015 3.985 13 C 0.017 3.983 14 H 0.060 0.940 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.317 5.317 20 C -0.386 4.386 21 H 0.091 0.909 22 C -0.186 4.186 23 N -0.541 5.541 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.211 1.211 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.443 -10.014 -5.563 12.287 hybrid contribution -0.838 0.715 -1.335 1.731 sum 3.605 -9.300 -6.897 12.127 Atomic orbital electron populations 1.22090 0.93918 1.02974 1.03314 1.22050 0.96120 0.78977 1.04805 1.43969 1.46460 1.11828 1.05411 1.21585 1.05522 0.91943 0.92322 1.19872 1.12481 0.91133 0.91882 1.98309 1.86919 1.51246 1.66303 1.21335 1.03438 0.96820 0.93435 1.20147 1.12957 0.91734 0.88908 1.16819 0.78041 0.85109 0.83155 1.90729 1.50298 1.20259 1.83574 1.45702 1.69008 1.12097 1.06153 1.21204 1.01216 0.96194 0.79934 1.21437 0.93896 0.90453 0.92512 0.94007 1.22850 1.00654 0.87219 0.91534 1.87801 1.51280 1.33847 1.58150 1.23358 0.88546 0.92874 0.99541 1.21439 1.01943 0.89280 0.85521 1.44101 1.39332 1.23433 1.24799 1.19232 1.26236 0.92556 1.00610 0.90918 1.25104 0.99815 0.95928 0.97741 1.69972 1.43920 0.97884 1.42293 0.86363 0.81324 0.77763 0.82353 1.20312 1.21540 1.21111 0.90733 0.91013 0.92429 0.89445 0.87347 0.80949 0.82659 0.74288 0.92137 0.91179 0.93513 0.89918 0.94131 0.90239 0.88888 0.95217 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.19 37.16 0.38 -1.59 16 2 C 0.10 1.17 6.12 -4.04 -0.02 1.15 16 3 N -0.40 -5.73 2.76 -112.82 -0.31 -6.04 16 4 C 0.02 0.30 11.34 -16.85 -0.19 0.10 16 5 C -0.12 -1.80 6.66 -39.93 -0.27 -2.06 16 6 Cl -0.06 -0.78 29.30 -51.86 -1.52 -2.30 16 7 C -0.12 -2.05 10.34 -39.09 -0.40 -2.46 16 8 C -0.02 -0.40 6.88 -81.98 -0.56 -0.96 16 9 C 0.58 10.69 7.77 -12.86 -0.10 10.59 16 10 O -0.57 -11.03 14.37 5.19 0.07 -10.96 16 11 N -0.68 -12.54 3.78 -61.62 -0.23 -12.78 16 12 C 0.14 2.46 4.45 -4.04 -0.02 2.44 16 13 C 0.12 2.35 3.20 -67.42 -0.22 2.13 16 14 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 15 C 0.06 0.97 6.29 37.31 0.23 1.20 16 16 O -0.39 -7.47 10.74 -35.23 -0.38 -7.85 16 17 C 0.03 0.66 6.99 37.31 0.26 0.92 16 18 C 0.14 3.20 5.38 -3.49 -0.02 3.18 16 19 N -0.59 -13.27 3.04 -164.24 -0.50 -13.77 16 20 C -0.26 -6.26 7.11 -15.06 -0.11 -6.37 16 21 H 0.07 1.82 5.81 -52.49 -0.30 1.51 16 22 C 0.01 0.36 5.07 -17.43 -0.09 0.27 16 23 N -0.90 -23.95 11.11 55.49 0.62 -23.33 16 24 Si 0.89 21.08 29.57 -169.99 -5.03 16.05 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.11 1.40 6.68 -51.93 -0.35 1.05 16 33 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.16 2.58 7.49 -52.49 -0.39 2.19 16 35 H 0.42 8.17 6.32 -40.82 -0.26 7.91 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.09 2.29 6.31 -51.93 -0.33 1.97 16 43 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.69 369.38 -9.04 -37.73 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.21 Total: 9.12 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.12 Total: 8.56 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.43 Total: -55.92 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.30 Total: -18.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.52 Total: -2.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.69 -9.04 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051249534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.159 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds