Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47538 * 2 1 4 4 C 1.35624 * 125.67773 * 261.89857 * 3 2 1 5 5 C 1.35522 * 108.85588 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 126.07696 * 179.97438 * 5 4 3 7 7 C 1.39888 * 107.84644 * 359.77595 * 5 4 3 8 8 C 1.37639 * 125.67548 * 81.88985 * 3 2 1 9 9 C 1.46668 * 126.22396 * 359.96792 * 8 3 2 10 10 O 1.21698 * 120.00216 * 5.71894 * 9 8 3 11 11 N 1.34778 * 119.99960 * 185.72211 * 9 8 3 12 12 C 1.46503 * 119.99596 * 185.11420 * 11 9 8 13 13 C 1.53006 * 109.46678 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.68071 * 300.76879 * 13 12 11 15 15 C 1.53295 * 109.68261 * 180.24955 * 13 12 11 16 16 O 1.42956 * 109.22750 * 187.93922 * 15 13 12 17 17 C 1.42960 * 114.16711 * 62.58113 * 16 15 13 18 18 C 1.53296 * 109.22229 * 297.42292 * 17 16 15 19 19 N 1.47147 * 109.68074 * 61.28796 * 13 12 11 20 20 C 1.36939 * 120.98635 * 350.28011 * 19 13 12 21 21 H 1.08000 * 119.99437 * 31.08559 * 20 19 13 22 22 C 1.38808 * 120.00474 * 211.08279 * 20 19 13 23 23 N 1.31622 * 119.99868 * 10.31742 * 22 20 19 24 24 Si 1.86803 * 119.99972 * 190.31197 * 22 20 19 25 25 H 1.48496 * 109.47054 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46823 * 120.00518 * 24 22 20 27 27 H 1.48500 * 109.47176 * 240.00173 * 24 22 20 28 28 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47010 * 300.00650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 60.00112 * 1 2 3 31 31 H 1.09000 * 109.47338 * 240.00022 * 2 1 3 32 32 H 1.09004 * 109.46990 * 119.99887 * 2 1 3 33 33 H 1.08006 * 125.57461 * 359.97438 * 4 3 2 34 34 H 1.08002 * 126.45128 * 180.23295 * 7 5 4 35 35 H 0.96999 * 119.99832 * 5.10917 * 11 9 8 36 36 H 1.09002 * 109.47090 * 60.00259 * 12 11 9 37 37 H 1.08994 * 109.47042 * 299.99619 * 12 11 9 38 38 H 1.09005 * 109.51128 * 307.86441 * 15 13 12 39 39 H 1.09000 * 109.51052 * 67.96058 * 15 13 12 40 40 H 1.08998 * 109.51233 * 57.34058 * 17 16 15 41 41 H 1.08997 * 109.51532 * 177.49799 * 17 16 15 42 42 H 1.09003 * 109.68351 * 172.02532 * 18 17 16 43 43 H 1.09007 * 109.68565 * 292.54197 * 18 17 16 44 44 H 0.96994 * 120.00061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4285 2.0752 -1.0907 5 6 2.8084 3.3168 -0.7025 6 17 3.4095 4.5728 -1.7392 7 6 2.6257 3.4079 0.6814 8 6 2.1373 2.1906 1.1069 9 6 1.7994 1.8268 2.4870 10 8 1.4678 0.6862 2.7518 11 7 1.8559 2.7557 3.4619 12 6 1.6279 2.3687 4.8564 13 6 1.7486 3.6019 5.7540 14 1 2.7414 4.0387 5.6460 15 6 1.5170 3.2014 7.2155 16 8 1.4477 4.3801 8.0213 17 6 0.3608 5.2494 7.6946 18 6 0.5331 5.7548 6.2577 19 7 0.7277 4.5919 5.3760 20 6 -0.0189 4.4356 4.2387 21 1 -0.2585 3.4447 3.8821 22 6 -0.4677 5.5506 3.5443 23 7 -0.0131 6.7462 3.8547 24 14 -1.7167 5.3542 2.1692 25 1 -2.0659 3.9187 2.0190 26 1 -2.9402 6.1291 2.4976 27 1 -1.1374 5.8588 0.8985 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4490 1.6997 -2.1032 34 1 2.8309 4.2688 1.3004 35 1 2.0476 3.6803 3.2402 36 1 2.3708 1.6288 5.1542 37 1 0.6298 1.9423 4.9565 38 1 0.5811 2.6487 7.2975 39 1 2.3411 2.5745 7.5561 40 1 -0.5793 4.7041 7.7784 41 1 0.3534 6.0967 8.3802 42 1 -0.3584 6.3022 5.9516 43 1 1.4032 6.4090 6.2004 44 1 -0.3264 7.5252 3.3693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051249534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = -26.392264 kcal Electronic energy + Delta-G solvation = -28839.386100 eV Core-core repulsion = 24818.896451 eV Total energy + Delta-G solvation = -4020.489648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53669 -40.54885 -39.62558 -37.40977 -36.92991 -35.50492 -34.86974 -33.30494 -32.21112 -30.53172 -30.16419 -28.95909 -26.97455 -25.23660 -24.64396 -23.80599 -22.91447 -21.60892 -21.41227 -20.52545 -19.13086 -18.31589 -17.58642 -17.35057 -16.84025 -16.49976 -16.36548 -16.23242 -15.91938 -15.59936 -15.39848 -15.26005 -15.01925 -14.93856 -14.69322 -14.32598 -14.13661 -13.75625 -13.64534 -13.52535 -13.12391 -13.00168 -12.92003 -12.76118 -12.49436 -12.37767 -12.19257 -12.14325 -11.99567 -11.85648 -11.84458 -11.29684 -11.04312 -10.64927 -10.56250 -9.97013 -9.71723 -9.22156 -8.61143 -7.87736 -5.37551 0.37391 1.12805 1.36743 1.43473 1.44347 1.47874 1.76660 2.32938 2.42201 2.52631 3.05143 3.29334 3.44813 3.73945 3.81552 3.95481 4.02909 4.08569 4.20050 4.23577 4.34330 4.37770 4.49072 4.49841 4.59333 4.65687 4.67327 4.71686 4.76196 4.82784 4.95287 5.02319 5.12623 5.16165 5.31731 5.36513 5.54339 5.65407 5.69529 5.73408 6.10561 6.30883 6.38159 6.62169 7.11407 7.21597 7.76967 8.32744 9.16743 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.004289 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.313344 B = 6527.446969 C = 7363.022755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.402 5.402 4 C 0.051 3.949 5 C -0.143 4.143 6 Cl -0.050 7.050 7 C -0.134 4.134 8 C -0.053 4.053 9 C 0.581 3.419 10 O -0.582 6.582 11 N -0.686 5.686 12 C 0.145 3.855 13 C 0.125 3.875 14 H 0.038 0.962 15 C 0.058 3.942 16 O -0.397 6.397 17 C 0.047 3.953 18 C 0.148 3.852 19 N -0.604 5.604 20 C -0.237 4.237 21 H 0.067 0.933 22 C -0.027 4.027 23 N -0.923 5.923 24 Si 0.937 3.063 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.099 0.901 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.217 0.783 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.119 0.881 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.007 0.993 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -11.189 -6.651 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.075 5.075 4 C -0.087 4.087 5 C -0.175 4.175 6 Cl -0.022 7.022 7 C -0.161 4.161 8 C -0.167 4.167 9 C 0.369 3.631 10 O -0.465 6.465 11 N -0.335 5.335 12 C 0.021 3.979 13 C 0.018 3.982 14 H 0.055 0.945 15 C -0.020 4.020 16 O -0.316 6.316 17 C -0.031 4.031 18 C 0.023 3.977 19 N -0.330 5.330 20 C -0.367 4.367 21 H 0.085 0.915 22 C -0.223 4.223 23 N -0.569 5.569 24 Si 0.767 3.233 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.160 0.840 35 H 0.249 0.751 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.025 0.975 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.931 -12.071 -6.401 14.526 hybrid contribution -0.939 1.280 -1.103 1.933 sum 3.992 -10.791 -7.504 13.736 Atomic orbital electron populations 1.22058 0.94217 1.04056 1.01493 1.22281 0.95793 0.77733 1.06351 1.44241 1.45804 1.12561 1.04864 1.22247 1.02174 0.90768 0.93461 1.20006 1.13797 0.92384 0.91362 1.98307 1.86897 1.51192 1.65766 1.21355 1.03694 0.96527 0.94549 1.19937 1.15029 0.92704 0.88999 1.17037 0.77471 0.84766 0.83820 1.90706 1.51090 1.20709 1.83999 1.45732 1.69338 1.11799 1.06629 1.21172 1.01071 0.96005 0.79623 1.21582 0.92506 0.89866 0.94220 0.94453 1.22980 1.02352 0.86935 0.89741 1.87805 1.51176 1.34321 1.58271 1.23208 0.88758 0.93731 0.97406 1.21267 0.99632 0.89018 0.87806 1.44294 1.40216 1.24035 1.24469 1.19232 1.25068 0.91905 1.00469 0.91550 1.25500 1.01445 0.96023 0.99378 1.70075 1.45348 0.98111 1.43330 0.85670 0.79895 0.77054 0.80675 1.20663 1.21907 1.21860 0.88278 0.95275 0.91618 0.84829 0.88853 0.76599 0.83990 0.75116 0.89614 0.92789 0.93165 0.86305 0.93797 0.87820 0.91571 0.97511 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.19 71.98 0.73 -2.79 16 2 C 0.10 2.02 6.12 86.38 0.53 2.55 16 3 N -0.40 -10.65 2.76 -510.86 -1.41 -12.06 16 4 C 0.05 1.18 11.34 83.48 0.95 2.12 16 5 C -0.14 -4.07 6.66 22.04 0.15 -3.93 16 6 Cl -0.05 -1.33 29.30 -2.72 -0.08 -1.41 16 7 C -0.13 -4.48 10.34 22.59 0.23 -4.25 16 8 C -0.05 -1.78 6.88 40.35 0.28 -1.50 16 9 C 0.58 21.56 7.77 86.44 0.67 22.24 16 10 O -0.58 -22.72 14.37 -4.34 -0.06 -22.78 16 11 N -0.69 -25.73 3.78 -467.07 -1.76 -27.50 16 12 C 0.15 5.09 4.45 86.38 0.38 5.48 16 13 C 0.12 4.63 3.20 44.97 0.14 4.78 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.06 1.88 6.29 72.08 0.45 2.33 16 16 O -0.40 -14.32 10.74 -148.98 -1.60 -15.92 16 17 C 0.05 1.71 6.99 72.08 0.50 2.22 16 18 C 0.15 6.71 5.38 86.34 0.46 7.18 16 19 N -0.60 -27.41 3.04 -673.52 -2.04 -29.46 16 20 C -0.24 -11.73 7.11 84.03 0.60 -11.14 16 21 H 0.07 3.38 5.81 -2.91 -0.02 3.37 16 22 C -0.03 -1.39 5.07 84.86 0.43 -0.96 16 23 N -0.92 -50.82 11.11 21.65 0.24 -50.58 16 24 Si 0.94 44.40 29.57 68.60 2.03 46.43 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 0.88 7.71 -2.39 -0.02 0.86 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.13 1.55 8.11 -2.39 -0.02 1.53 16 32 H 0.09 2.26 6.68 -2.38 -0.02 2.25 16 33 H 0.22 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.14 4.97 7.49 -2.91 -0.02 4.95 16 35 H 0.41 16.63 6.32 -92.71 -0.59 16.04 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 2.08 7.53 -2.39 -0.02 2.06 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.07 3.36 6.31 -2.39 -0.02 3.34 16 43 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -63.59 369.38 2.26 -61.33 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.44 Total: 27.62 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 6.52 Total: 24.32 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.98 Total: -119.60 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.66 Total: -38.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -63.59 2.26 -61.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051249534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.939 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds