Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47029 * 2 1 4 4 C 1.35634 * 125.67609 * 257.28323 * 3 2 1 5 5 C 1.35519 * 108.84867 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 126.07227 * 180.02562 * 5 4 3 7 7 C 1.39887 * 107.85119 * 359.77954 * 5 4 3 8 8 C 1.37638 * 125.67409 * 77.32823 * 3 2 1 9 9 C 1.46667 * 126.22229 * 359.92935 * 8 3 2 10 10 O 1.21701 * 119.99532 * 173.91053 * 9 8 3 11 11 N 1.34777 * 120.00249 * 353.90613 * 9 8 3 12 12 C 1.46503 * 119.99944 * 183.97449 * 11 9 8 13 13 C 1.53002 * 109.46874 * 185.12853 * 12 11 9 14 14 H 1.09007 * 109.70824 * 305.54453 * 13 12 11 15 15 C 1.53288 * 109.68109 * 66.07971 * 13 12 11 16 16 O 1.42966 * 109.22001 * 172.02342 * 15 13 12 17 17 C 1.42955 * 114.16707 * 297.42107 * 16 15 13 18 18 C 1.53293 * 109.22251 * 62.58271 * 17 16 15 19 19 N 1.47145 * 109.67922 * 185.00977 * 13 12 11 20 20 C 1.36940 * 120.98379 * 9.71746 * 19 13 12 21 21 H 1.07994 * 120.00339 * 324.96564 * 20 19 13 22 22 C 1.38815 * 119.99819 * 144.96727 * 20 19 13 23 23 N 1.31619 * 120.00107 * 358.04122 * 22 20 19 24 24 Si 1.86798 * 119.99944 * 178.04890 * 22 20 19 25 25 H 1.48497 * 109.47508 * 54.99455 * 24 22 20 26 26 H 1.48500 * 109.47200 * 174.99905 * 24 22 20 27 27 H 1.48508 * 109.46789 * 294.99693 * 24 22 20 28 28 H 1.08994 * 109.46894 * 305.90918 * 1 2 3 29 29 H 1.09002 * 109.46961 * 65.91395 * 1 2 3 30 30 H 1.08996 * 109.46905 * 185.91370 * 1 2 3 31 31 H 1.09006 * 109.47378 * 240.00298 * 2 1 3 32 32 H 1.09005 * 109.47506 * 120.00379 * 2 1 3 33 33 H 1.07995 * 125.57177 * 0.06268 * 4 3 2 34 34 H 1.08008 * 126.44914 * 180.22563 * 7 5 4 35 35 H 0.96997 * 119.99510 * 3.97639 * 11 9 8 36 36 H 1.08996 * 109.46685 * 65.12856 * 12 11 9 37 37 H 1.09000 * 109.46951 * 305.12981 * 12 11 9 38 38 H 1.08993 * 109.51797 * 291.95134 * 15 13 12 39 39 H 1.09004 * 109.51228 * 52.10062 * 15 13 12 40 40 H 1.09005 * 109.51563 * 302.65580 * 17 16 15 41 41 H 1.09001 * 109.55206 * 182.53368 * 17 16 15 42 42 H 1.09003 * 109.67859 * 187.97344 * 18 17 16 43 43 H 1.08999 * 109.71586 * 67.44117 * 18 17 16 44 44 H 0.96999 * 120.00359 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5106 2.0462 -1.0748 5 6 2.8621 3.2978 -0.6919 6 17 3.5406 4.5265 -1.7135 7 6 2.5758 3.4255 0.6713 8 6 2.0546 2.2198 1.0909 9 6 1.6130 1.8925 2.4507 10 8 1.7980 2.6831 3.3572 11 7 1.0023 0.7164 2.6962 12 6 0.4835 0.4259 4.0351 13 6 -0.0417 -1.0105 4.0779 14 1 -0.7712 -1.1591 3.2816 15 6 1.1228 -1.9915 3.9009 16 8 0.6548 -3.3233 4.1271 17 6 0.1675 -3.5555 5.4508 18 6 -1.0459 -2.6546 5.7071 19 7 -0.6721 -1.2690 5.3821 20 6 -0.9037 -0.2502 6.2674 21 1 -0.2061 0.5709 6.3403 22 6 -2.0352 -0.2730 7.0712 23 7 -2.9052 -1.2539 6.9553 24 14 -2.3234 1.0886 8.3172 25 1 -2.2887 2.4043 7.6296 26 1 -3.6493 0.9001 8.9587 27 1 -1.2610 1.0437 9.3539 28 1 -0.3633 0.6027 0.8323 29 1 -0.3633 0.4194 -0.9382 30 1 -0.3633 -1.0222 0.1059 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6063 1.6442 -2.0725 34 1 2.7353 4.3026 1.2811 35 1 0.9064 0.0623 1.9863 36 1 -0.3271 1.1163 4.2683 37 1 1.2823 0.5427 4.7675 38 1 1.5160 -1.9109 2.8875 39 1 1.9098 -1.7555 4.6172 40 1 0.9510 -3.3252 6.1728 41 1 -0.1263 -4.6001 5.5533 42 1 -1.3367 -2.7201 6.7556 43 1 -1.8769 -2.9685 5.0755 44 1 -3.6957 -1.2700 7.5172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051249539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -19.989226 kcal Electronic energy + Delta-G solvation = -28362.945306 eV Core-core repulsion = 24342.733314 eV Total energy + Delta-G solvation = -4020.211992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72467 -40.63973 -39.80859 -37.45412 -37.00142 -36.21926 -34.87794 -33.31922 -32.19650 -30.60453 -30.31679 -28.81544 -27.39426 -25.30157 -24.75822 -24.00133 -22.84745 -21.75608 -21.58566 -20.92035 -19.13031 -18.50340 -17.61041 -17.27248 -16.94593 -16.78016 -16.54688 -16.26517 -16.03281 -15.84992 -15.50458 -15.32491 -15.12672 -14.99432 -14.66372 -14.28705 -14.07423 -13.87721 -13.70767 -13.64375 -13.14896 -13.02996 -12.87059 -12.84876 -12.61295 -12.45835 -12.28662 -12.15329 -12.07017 -11.97461 -11.79669 -11.38290 -11.34565 -10.70205 -10.60521 -10.29477 -9.77064 -9.28076 -8.64941 -7.94041 -5.51084 0.26214 1.11051 1.41785 1.43676 1.45193 1.51402 1.74190 2.05950 2.17936 2.44307 2.93823 3.23241 3.44606 3.53986 3.62975 3.85362 3.88722 3.95258 4.02703 4.17439 4.18538 4.26068 4.39513 4.49661 4.52750 4.58743 4.63260 4.70204 4.77895 4.85741 4.91703 4.94295 5.00782 5.14799 5.17394 5.29823 5.35285 5.59446 5.62243 5.63555 6.01625 6.23519 6.32091 6.37934 7.00141 7.06953 7.69596 8.25175 9.10191 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.003031 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.410415 B = 9236.156220 C =10538.031597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 N -0.411 5.411 4 C 0.069 3.931 5 C -0.145 4.145 6 Cl -0.046 7.046 7 C -0.110 4.110 8 C -0.062 4.062 9 C 0.584 3.416 10 O -0.572 6.572 11 N -0.717 5.717 12 C 0.144 3.856 13 C 0.133 3.867 14 H 0.039 0.961 15 C 0.057 3.943 16 O -0.392 6.392 17 C 0.046 3.954 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.267 4.267 21 H 0.065 0.935 22 C -0.033 4.033 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.277 1.277 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.154 0.846 32 H 0.093 0.907 33 H 0.222 0.778 34 H 0.143 0.857 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.008 0.992 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -0.691 -20.163 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.043 4.043 3 N -0.087 5.087 4 C -0.069 4.069 5 C -0.178 4.178 6 Cl -0.017 7.017 7 C -0.137 4.137 8 C -0.174 4.174 9 C 0.372 3.628 10 O -0.452 6.452 11 N -0.376 5.376 12 C 0.020 3.980 13 C 0.026 3.974 14 H 0.056 0.944 15 C -0.021 4.021 16 O -0.311 6.311 17 C -0.032 4.032 18 C 0.024 3.976 19 N -0.331 5.331 20 C -0.397 4.397 21 H 0.083 0.917 22 C -0.230 4.230 23 N -0.572 5.572 24 Si 0.787 3.213 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.203 1.203 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.172 0.828 32 H 0.111 0.889 33 H 0.239 0.761 34 H 0.161 0.839 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.629 -0.617 -19.573 22.282 hybrid contribution -0.698 1.073 1.127 1.705 sum 9.931 0.457 -18.447 20.955 Atomic orbital electron populations 1.22461 0.93485 1.05095 1.03771 1.22588 0.96134 0.78014 1.07526 1.44412 1.45507 1.12162 1.06605 1.22350 0.99912 0.90861 0.93799 1.19983 1.13030 0.92877 0.91878 1.98322 1.83894 1.53050 1.66461 1.21223 1.01239 0.96844 0.94402 1.20000 1.15995 0.93519 0.87860 1.17322 0.77225 0.81479 0.86750 1.90837 1.58045 1.50330 1.45983 1.46467 1.58920 1.18431 1.13761 1.21117 0.97780 0.96213 0.82923 1.21347 0.94417 0.92307 0.89282 0.94373 1.23085 0.94654 0.82542 1.01862 1.87780 1.82299 1.29275 1.31706 1.23247 0.96083 1.00443 0.83415 1.21311 0.93034 0.82862 1.00376 1.44123 1.71872 1.03797 1.13321 1.19260 1.02832 1.02216 1.15354 0.91747 1.25917 0.95283 0.99453 1.02346 1.70053 1.12255 1.33104 1.41748 0.85481 0.76951 0.79651 0.79215 1.20725 1.21491 1.20296 0.93834 0.89644 0.87741 0.82795 0.88883 0.76118 0.83914 0.74615 0.92962 0.92372 0.86737 0.93809 0.93856 0.87206 0.91299 0.97416 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.27 71.98 0.67 -1.64 16 2 C 0.08 0.77 5.99 86.38 0.52 1.28 16 3 N -0.41 -6.84 2.78 -510.86 -1.42 -8.26 16 4 C 0.07 0.95 11.34 83.48 0.95 1.90 16 5 C -0.15 -2.88 6.66 22.04 0.15 -2.73 16 6 Cl -0.05 -0.83 29.30 -2.72 -0.08 -0.91 16 7 C -0.11 -2.83 10.65 22.59 0.24 -2.59 16 8 C -0.06 -1.59 6.85 40.35 0.28 -1.32 16 9 C 0.58 19.24 7.77 86.44 0.67 19.91 16 10 O -0.57 -24.11 16.87 -4.35 -0.07 -24.18 16 11 N -0.72 -21.14 4.36 -467.08 -2.04 -23.18 16 12 C 0.14 5.45 3.91 86.38 0.34 5.79 16 13 C 0.13 5.08 3.16 44.97 0.14 5.23 16 14 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 15 C 0.06 1.79 6.08 72.08 0.44 2.23 16 16 O -0.39 -13.49 10.74 -148.98 -1.60 -15.09 16 17 C 0.05 1.66 6.98 72.08 0.50 2.16 16 18 C 0.15 6.88 5.35 86.35 0.46 7.34 16 19 N -0.61 -28.98 3.03 -673.75 -2.04 -31.03 16 20 C -0.27 -14.21 8.43 84.03 0.71 -13.50 16 21 H 0.06 3.45 6.51 -2.91 -0.02 3.43 16 22 C -0.03 -1.80 5.22 84.86 0.44 -1.36 16 23 N -0.93 -52.69 10.96 21.65 0.24 -52.45 16 24 Si 0.96 44.84 29.55 68.60 2.03 46.86 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 H 0.04 0.84 6.48 -2.39 -0.02 0.82 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 0.24 8.09 -2.38 -0.02 0.22 16 32 H 0.09 1.00 6.39 -2.38 -0.02 0.99 16 33 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.41 9.19 2.26 -92.71 -0.21 8.98 16 36 H 0.05 2.34 7.30 -2.39 -0.02 2.32 16 37 H 0.06 2.40 7.80 -2.39 -0.02 2.38 16 38 H 0.11 2.61 7.61 -2.39 -0.02 2.59 16 39 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 40 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.07 3.55 6.35 -2.39 -0.02 3.54 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -71.65 366.77 2.33 -69.32 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.82 Total: 16.23 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 6.50 Total: 22.69 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -5.26 Total: -114.92 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.67 Total: -39.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -71.65 2.33 -69.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051249539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.332 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds