Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99614 * 2 1 4 4 C 1.53004 * 109.47038 * 90.00274 * 3 2 1 5 5 C 1.52997 * 109.47283 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47072 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00137 * 269.99753 * 6 5 4 8 8 C 1.34777 * 119.99835 * 90.00151 * 6 5 4 9 9 O 1.21555 * 120.00488 * 3.61685 * 8 6 5 10 10 C 1.47874 * 119.99696 * 183.61228 * 8 6 5 11 11 N 1.34552 * 126.04681 * 172.64988 * 10 8 6 12 12 C 1.30868 * 107.27116 * 180.02562 * 11 10 8 13 13 N 1.34585 * 107.62434 * 0.02562 * 12 11 10 14 14 H 0.97002 * 125.75135 * 179.74035 * 13 12 11 15 15 N 1.28847 * 108.50164 * 359.97438 * 13 12 11 16 16 C 1.34768 * 119.99975 * 180.02562 * 2 1 3 17 17 O 1.21284 * 120.00383 * 179.97438 * 16 2 1 18 18 C 1.50709 * 120.00146 * 0.02562 * 16 2 1 19 19 S 1.80999 * 109.47002 * 180.02562 * 18 16 2 20 20 C 1.76201 * 99.99891 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00041 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99910 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00338 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00005 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46760 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46990 * 119.99393 * 24 22 20 27 27 H 1.48493 * 109.47149 * 239.99475 * 24 22 20 28 28 H 1.08998 * 109.47348 * 90.00240 * 1 2 3 29 29 H 1.09005 * 109.47052 * 209.99575 * 1 2 3 30 30 H 1.09000 * 109.47202 * 329.99634 * 1 2 3 31 31 H 1.08997 * 109.47687 * 330.00182 * 3 2 1 32 32 H 1.08998 * 109.46872 * 209.99701 * 3 2 1 33 33 H 1.09006 * 109.46800 * 59.99669 * 4 3 2 34 34 H 1.09000 * 109.47190 * 300.00333 * 4 3 2 35 35 H 1.08997 * 109.47271 * 60.00014 * 5 4 3 36 36 H 1.09002 * 109.46904 * 300.00149 * 5 4 3 37 37 H 1.09000 * 109.47387 * 263.96980 * 7 6 5 38 38 H 1.09003 * 109.47096 * 23.97098 * 7 6 5 39 39 H 1.08994 * 109.47241 * 143.96876 * 7 6 5 40 40 H 1.07992 * 126.18968 * 179.97438 * 12 11 10 41 41 H 1.08997 * 109.46935 * 299.99666 * 18 16 2 42 42 H 1.08994 * 109.47323 * 59.99611 * 18 16 2 43 43 H 0.96993 * 120.00346 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2179 3.0351 1.4426 6 7 3.4626 3.4576 2.8238 7 6 2.4865 4.3037 3.5149 8 6 4.5858 3.0680 3.4587 9 8 5.4265 2.4214 2.8650 10 6 4.7954 3.4274 4.8778 11 7 5.7947 2.9905 5.6659 12 6 5.6266 3.5348 6.8440 13 7 4.5252 4.3059 6.7833 14 1 4.1579 4.8281 7.5136 15 7 4.0379 4.2297 5.5930 16 6 2.1389 -1.1671 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0017 19 16 2.5616 -3.8480 -0.0014 20 6 1.4415 -5.2082 -0.0036 21 1 0.3763 -5.0305 -0.0043 22 6 1.9283 -6.5080 -0.0035 23 7 3.2267 -6.7247 -0.0022 24 14 0.7409 -7.9501 -0.0052 25 1 -0.6546 -7.4422 -0.0071 26 1 0.9678 -8.7767 -1.2178 27 1 0.9654 -8.7776 1.2072 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5138 33 1 3.0416 0.9507 1.9563 34 1 1.5001 1.8406 1.9564 35 1 2.6292 3.7950 0.9287 36 1 4.1703 2.9044 0.9288 37 1 2.7887 5.3478 3.4338 38 1 1.5051 4.1730 3.0589 39 1 2.4393 4.0197 4.5661 40 1 6.2571 3.3907 7.7089 41 1 0.7584 -2.5307 0.8880 42 1 0.7590 -2.5295 -0.8919 43 1 3.5669 -7.6330 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001066871372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = 5.137590 kcal Electronic energy + Delta-G solvation = -26453.940293 eV Core-core repulsion = 22469.154339 eV Total energy + Delta-G solvation = -3984.785954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.51387 -41.02199 -40.65590 -37.46193 -36.57300 -34.59747 -34.50179 -33.92258 -32.36753 -30.71902 -28.29326 -27.74612 -27.70775 -26.80558 -24.76612 -23.91187 -22.84365 -20.86565 -20.59800 -19.56110 -19.47654 -18.41874 -18.01365 -17.56203 -17.47780 -16.93625 -16.89299 -16.74340 -16.07771 -15.90024 -15.79516 -15.42268 -14.79283 -14.59005 -14.51555 -14.25039 -14.15387 -13.87419 -13.56562 -13.36555 -13.19037 -13.12940 -12.92285 -12.83802 -12.82254 -12.57308 -12.44633 -11.82554 -11.75704 -11.65515 -11.52345 -11.39914 -11.16933 -10.90561 -10.75079 -10.26793 -9.93489 -9.59254 -8.70062 -8.35274 -6.14884 0.20813 1.11450 1.25049 1.41132 1.44590 1.50612 1.57595 1.60782 1.96395 2.16270 2.20026 2.26814 2.98519 3.02705 3.26408 3.45850 3.71505 3.89569 4.00824 4.02715 4.15429 4.21884 4.35288 4.40234 4.41440 4.46790 4.52252 4.65703 4.73900 4.81153 4.83476 4.96393 4.98872 5.04583 5.17198 5.29426 5.40336 5.48025 5.62516 5.93021 6.15067 6.18960 6.28982 6.82600 7.05110 7.06944 7.17189 8.74549 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002153 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.737070 B =13002.134328 C =14085.795303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.120 3.880 4 C -0.138 4.138 5 C 0.122 3.878 6 N -0.595 5.595 7 C 0.071 3.929 8 C 0.593 3.407 9 O -0.564 6.564 10 C 0.122 3.878 11 N -0.525 5.525 12 C 0.219 3.781 13 N -0.379 5.379 14 H 0.474 0.526 15 N -0.258 5.258 16 C 0.523 3.477 17 O -0.568 6.568 18 C -0.120 4.120 19 S -0.164 6.164 20 C -0.542 4.542 21 H 0.085 0.915 22 C 0.009 3.991 23 N -0.913 5.913 24 Si 1.003 2.997 25 H -0.254 1.254 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.281 0.719 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 31.775 14.015 36.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.003 4.003 4 C -0.178 4.178 5 C -0.001 4.001 6 N -0.327 5.327 7 C -0.070 4.070 8 C 0.378 3.622 9 O -0.440 6.440 10 C -0.157 4.157 11 N -0.251 5.251 12 C -0.077 4.077 13 N -0.105 5.105 14 H 0.326 0.674 15 N -0.102 5.102 16 C 0.311 3.689 17 O -0.447 6.447 18 C -0.271 4.271 19 S 0.063 5.937 20 C -0.690 4.690 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.825 3.175 25 H -0.177 1.177 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.296 0.704 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.809 31.366 13.201 34.916 hybrid contribution -1.232 -1.062 0.717 1.778 sum -9.041 30.304 13.919 34.552 Atomic orbital electron populations 1.22131 0.76486 1.04866 1.03574 1.47880 1.08726 1.04622 1.73310 1.21484 0.97809 0.84807 0.96205 1.22205 1.01054 0.96759 0.97800 1.21570 1.01123 0.96426 0.80960 1.47727 1.19854 1.50336 1.14766 1.22376 0.91841 0.94030 0.98765 1.16975 0.82502 0.79249 0.83483 1.90851 1.45386 1.40896 1.66845 1.23521 0.94074 1.01113 0.97000 1.71267 1.24491 1.26092 1.03231 1.27601 0.90947 0.90759 0.98434 1.45320 1.20315 1.34976 1.09928 0.67395 1.74349 1.22336 1.19601 0.93918 1.20264 0.87305 0.85895 0.75442 1.90711 1.16033 1.87567 1.50357 1.23354 1.02513 0.94896 1.06335 1.85737 1.13130 0.97763 1.97030 1.23212 0.94538 0.92446 1.58795 0.89737 1.26219 0.97697 1.01870 0.93718 1.70214 1.14279 1.22430 1.48071 0.84843 0.78111 0.76494 0.78086 1.17742 1.19842 1.19938 0.90739 0.91221 0.87446 0.85127 0.92688 0.96551 0.88975 0.84707 0.92019 0.90921 0.87994 0.89498 0.70372 0.87558 0.87220 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -16.99 2.87 -846.75 -2.43 -19.43 16 3 C 0.12 2.76 5.41 86.38 0.47 3.23 16 4 C -0.14 -3.22 5.86 30.59 0.18 -3.04 16 5 C 0.12 2.39 5.41 86.38 0.47 2.85 16 6 N -0.59 -12.74 2.87 -850.17 -2.44 -15.18 16 7 C 0.07 0.83 9.60 127.77 1.23 2.05 16 8 C 0.59 18.39 7.68 86.79 0.67 19.05 16 9 O -0.56 -23.76 16.65 -3.89 -0.06 -23.82 16 10 C 0.12 3.12 7.66 137.13 1.05 4.17 16 11 N -0.53 -13.33 11.41 -193.04 -2.20 -15.53 16 12 C 0.22 2.25 13.14 180.30 2.37 4.61 16 13 N -0.38 -2.55 6.93 -60.38 -0.42 -2.97 16 14 H 0.47 -1.82 8.96 -219.80 -1.97 -3.79 16 15 N -0.26 -4.01 8.80 -52.44 -0.46 -4.47 16 16 C 0.52 21.58 7.69 87.66 0.67 22.25 16 17 O -0.57 -29.71 15.44 -3.04 -0.05 -29.76 16 18 C -0.12 -5.13 4.71 71.24 0.34 -4.79 16 19 S -0.16 -9.70 20.57 -56.49 -1.16 -10.86 16 20 C -0.54 -32.09 9.50 67.95 0.65 -31.44 16 21 H 0.08 4.61 7.80 -2.91 -0.02 4.59 16 22 C 0.01 0.55 5.49 84.86 0.47 1.01 16 23 N -0.91 -58.29 13.22 21.65 0.29 -58.00 16 24 Si 1.00 44.79 29.55 68.60 2.03 46.81 16 25 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.28 6.44 -2.38 -0.02 1.27 16 30 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 31 H 0.13 1.60 8.07 -2.39 -0.02 1.58 16 32 H 0.05 1.66 7.42 -2.39 -0.02 1.64 16 33 H 0.02 0.56 8.14 -2.38 -0.02 0.55 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.14 1.25 8.07 -2.39 -0.02 1.23 16 36 H 0.06 1.61 7.37 -2.39 -0.02 1.60 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.59 8.03 -2.39 -0.02 0.57 16 39 H 0.09 1.13 5.37 -2.39 -0.01 1.11 16 40 H 0.28 -0.53 8.06 -2.91 -0.02 -0.56 16 41 H 0.11 4.12 7.40 -2.40 -0.02 4.10 16 42 H 0.11 4.19 8.11 -2.40 -0.02 4.17 16 43 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -107.28 382.11 2.02 -105.26 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -0.92 Total: 5.47 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 9.86 Total: 22.46 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -7.67 Total: -115.57 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.11 Total: -53.59 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -9.70 SS G_CDS: -1.16 Total: -10.86 kcal Total: -107.28 2.02 -105.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066871372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.402 kcal (2) G-P(sol) polarization free energy of solvation -107.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds