Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00010 * 2 1 4 4 C 1.53001 * 109.47108 * 90.00278 * 3 2 1 5 5 C 1.52998 * 109.47116 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00049 * 269.99755 * 6 5 4 8 8 C 1.34769 * 120.00168 * 89.99700 * 6 5 4 9 9 O 1.21621 * 120.00186 * 1.00168 * 8 6 5 10 10 C 1.47236 * 120.00377 * 180.99421 * 8 6 5 11 11 C 1.37006 * 127.19396 * 169.95440 * 10 8 6 12 12 N 1.33319 * 106.37680 * 180.02562 * 11 10 8 13 13 N 1.28517 * 109.43827 * 359.97438 * 12 11 10 14 14 N 1.28718 * 110.63606 * 0.02562 * 13 12 11 15 15 H 0.97006 * 126.03417 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99679 * 179.97438 * 2 1 3 17 17 O 1.21286 * 119.99561 * 179.97438 * 16 2 1 18 18 C 1.50700 * 120.00474 * 0.02562 * 16 2 1 19 19 S 1.80998 * 109.47479 * 179.97438 * 18 16 2 20 20 C 1.76194 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00278 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00196 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99343 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00269 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46962 * 90.00077 * 24 22 20 26 26 H 1.48498 * 109.47190 * 210.00144 * 24 22 20 27 27 H 1.48497 * 109.46973 * 330.00405 * 24 22 20 28 28 H 1.08996 * 109.47479 * 89.99511 * 1 2 3 29 29 H 1.09001 * 109.47435 * 210.00361 * 1 2 3 30 30 H 1.09007 * 109.47172 * 329.99836 * 1 2 3 31 31 H 1.08998 * 109.47167 * 329.99942 * 3 2 1 32 32 H 1.09001 * 109.47295 * 209.99696 * 3 2 1 33 33 H 1.08998 * 109.47380 * 59.99795 * 4 3 2 34 34 H 1.09005 * 109.47016 * 299.99971 * 4 3 2 35 35 H 1.08994 * 109.47285 * 60.00157 * 5 4 3 36 36 H 1.09001 * 109.47290 * 299.99420 * 5 4 3 37 37 H 1.09002 * 109.47374 * 263.38565 * 7 6 5 38 38 H 1.09007 * 109.46918 * 23.38203 * 7 6 5 39 39 H 1.09004 * 109.47345 * 143.37892 * 7 6 5 40 40 H 1.08002 * 126.81149 * 0.02562 * 11 10 8 41 41 H 1.09000 * 109.46750 * 300.00251 * 18 16 2 42 42 H 1.09000 * 109.46629 * 59.99437 * 18 16 2 43 43 H 0.97003 * 119.99282 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2170 3.0357 1.4425 6 7 3.4606 3.4588 2.8237 7 6 2.4835 4.3044 3.5140 8 6 4.5837 3.0703 3.4594 9 8 5.4036 2.3835 2.8804 10 6 4.8183 3.4774 4.8548 11 6 5.7968 3.0200 5.6976 12 7 5.6275 3.6622 6.8536 13 7 4.6261 4.4619 6.7560 14 7 4.1034 4.3930 5.5818 15 1 3.3383 4.8996 5.2672 16 6 2.1388 -1.1672 0.0005 17 8 3.3516 -1.1672 0.0001 18 6 1.3853 -2.4723 0.0005 19 16 2.5614 -3.8481 0.0005 20 6 1.4414 -5.2082 0.0013 21 1 0.3761 -5.0305 0.0020 22 6 1.9280 -6.5081 0.0010 23 7 3.2264 -6.7246 0.0006 24 14 0.7406 -7.9501 0.0025 25 1 0.4244 -8.3324 -1.3972 26 1 1.3626 -9.1028 0.7021 27 1 -0.5093 -7.5612 0.7038 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6084 2.0283 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 3.0416 0.9507 1.9563 34 1 1.5001 1.8407 1.9564 35 1 2.6275 3.7951 0.9289 36 1 4.1694 2.9058 0.9286 37 1 2.7904 5.3478 3.4416 38 1 1.5045 4.1807 3.0508 39 1 2.4283 4.0138 4.5632 40 1 6.5549 2.2850 5.4706 41 1 0.7583 -2.5298 0.8903 42 1 0.7590 -2.5302 -0.8897 43 1 3.5665 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001066873552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 52.304074 kcal Electronic energy + Delta-G solvation = -26494.786000 eV Core-core repulsion = 22512.045338 eV Total energy + Delta-G solvation = -3982.740662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.86242 -40.30259 -39.45510 -36.78360 -35.62756 -34.20536 -32.78395 -32.42842 -31.61515 -29.40201 -28.01946 -27.16791 -25.87824 -25.42320 -23.95767 -23.37912 -22.19518 -21.10200 -19.26012 -18.56307 -17.69630 -17.46349 -16.98035 -16.94454 -16.52083 -15.97108 -15.69478 -15.28825 -14.84929 -14.80618 -14.70718 -14.38309 -13.92094 -13.86677 -13.42325 -13.15848 -13.04903 -12.78478 -12.62836 -12.56955 -12.44582 -12.16858 -12.01971 -11.79173 -11.63836 -11.17401 -11.06664 -11.02446 -10.92756 -10.75569 -10.64411 -9.97587 -9.81031 -9.49784 -9.30600 -9.06644 -8.57119 -8.22200 -6.50089 -6.21370 -3.92152 0.43207 1.86231 1.89724 2.25675 2.60262 2.93069 3.04604 3.21979 3.25518 3.30000 3.58671 3.60559 4.00482 4.10529 4.20138 4.36583 4.50563 4.58115 4.65610 4.76025 4.78374 4.85199 4.95441 5.06895 5.12356 5.13565 5.22941 5.36129 5.49345 5.56209 5.58233 5.64705 5.74028 5.87480 5.90524 6.05082 6.08797 6.11497 6.57634 6.61469 7.45063 7.48717 7.59366 7.81613 8.35024 8.54631 9.23642 10.86045 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.002138 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.533908 B =13094.834382 C =14169.863698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.153 4.153 5 C 0.120 3.880 6 N -0.612 5.612 7 C 0.054 3.946 8 C 0.592 3.408 9 O -0.495 6.495 10 C -0.065 4.065 11 C 0.037 3.963 12 N -0.268 5.268 13 N -0.053 5.053 14 N -0.384 5.384 15 H 0.451 0.549 16 C 0.531 3.469 17 O -0.510 6.510 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.207 0.793 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 27.764 5.503 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.002 4.002 4 C -0.193 4.193 5 C -0.002 4.002 6 N -0.346 5.346 7 C -0.090 4.090 8 C 0.377 3.623 9 O -0.366 6.366 10 C -0.199 4.199 11 C -0.122 4.122 12 N -0.133 5.133 13 N -0.035 5.035 14 N -0.119 5.119 15 H 0.306 0.694 16 C 0.318 3.682 17 O -0.383 6.383 18 C -0.300 4.300 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.224 0.776 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.391 27.839 6.574 28.940 hybrid contribution -2.940 -1.033 -1.105 3.306 sum -7.331 26.806 5.469 28.324 Atomic orbital electron populations 1.21746 0.79738 1.02967 1.01735 1.47851 1.06747 1.05634 1.76049 1.21229 0.98332 0.85031 0.95580 1.22356 1.00638 0.97530 0.98753 1.21548 1.02299 0.96003 0.80349 1.47699 1.20171 1.51504 1.15240 1.22218 0.94661 0.94599 0.97513 1.16849 0.81961 0.80358 0.83176 1.90959 1.44210 1.36359 1.65096 1.22362 1.00042 1.01090 0.96423 1.24025 0.98955 1.00921 0.88339 1.75026 1.10025 1.06184 1.22035 1.78199 1.06244 1.17791 1.01234 1.46735 1.25559 1.29736 1.09870 0.69372 1.20383 0.88007 0.84598 0.75164 1.90722 1.13649 1.86717 1.47206 1.23553 1.04557 0.97321 1.04613 1.85446 1.07984 0.93322 1.96690 1.22849 0.94269 0.92225 1.59026 0.90985 1.24999 0.95676 0.98385 0.94560 1.70023 1.11731 1.21675 1.46755 0.86168 0.80242 0.80746 0.78337 1.20267 1.20732 1.19731 0.92687 0.90693 0.91628 0.90812 0.89452 0.90375 0.91826 0.89788 0.88678 0.91439 0.88480 0.91493 0.77640 0.89374 0.89304 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.24 59.85 0.61 1.37 16 2 N -0.63 -8.29 2.87 -181.57 -0.52 -8.81 16 3 C 0.12 1.27 5.41 -4.04 -0.02 1.25 16 4 C -0.15 -1.45 5.86 -26.73 -0.16 -1.61 16 5 C 0.12 0.86 5.38 -4.04 -0.02 0.84 16 6 N -0.61 -4.22 2.87 -182.92 -0.53 -4.74 16 7 C 0.05 0.12 8.93 59.85 0.53 0.66 16 8 C 0.59 6.03 7.66 -12.61 -0.10 5.93 16 9 O -0.49 -7.15 16.51 5.26 0.09 -7.06 16 10 C -0.07 -0.59 6.74 -82.33 -0.55 -1.14 16 11 C 0.04 0.37 11.88 -17.35 -0.21 0.17 16 12 N -0.27 -3.01 12.35 30.47 0.38 -2.63 16 13 N -0.05 -0.51 13.35 60.35 0.81 0.30 16 14 N -0.38 -2.56 6.06 33.31 0.20 -2.36 16 15 H 0.45 1.24 5.10 -190.32 -0.97 0.27 16 16 C 0.53 9.99 7.69 -10.99 -0.08 9.91 16 17 O -0.51 -11.70 15.44 5.55 0.09 -11.61 16 18 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.09 1.11 7.42 -51.93 -0.39 0.72 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 36 H 0.09 0.87 7.41 -51.93 -0.38 0.49 16 37 H 0.07 0.01 7.81 -51.93 -0.41 -0.39 16 38 H 0.10 0.07 8.02 -51.93 -0.42 -0.35 16 39 H 0.07 0.14 5.15 -51.93 -0.27 -0.13 16 40 H 0.21 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 42 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -39.71 379.29 -6.37 -46.07 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.46 Total: -3.34 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.37 Total: 1.52 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.07 Total: -43.81 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.17 Total: -18.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.71 -6.37 -46.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066873552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.377 kcal (2) G-P(sol) polarization free energy of solvation -39.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds