Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00010 * 2 1 4 4 C 1.53001 * 109.47108 * 90.00278 * 3 2 1 5 5 C 1.52998 * 109.47116 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00049 * 269.99755 * 6 5 4 8 8 C 1.34769 * 120.00168 * 89.99700 * 6 5 4 9 9 O 1.21621 * 120.00186 * 1.00168 * 8 6 5 10 10 C 1.47236 * 120.00377 * 180.99421 * 8 6 5 11 11 C 1.37006 * 127.19396 * 169.95440 * 10 8 6 12 12 N 1.33319 * 106.37680 * 180.02562 * 11 10 8 13 13 N 1.28517 * 109.43827 * 359.97438 * 12 11 10 14 14 N 1.28718 * 110.63606 * 0.02562 * 13 12 11 15 15 H 0.97006 * 126.03417 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99679 * 179.97438 * 2 1 3 17 17 O 1.21286 * 119.99561 * 179.97438 * 16 2 1 18 18 C 1.50700 * 120.00474 * 0.02562 * 16 2 1 19 19 S 1.80998 * 109.47479 * 179.97438 * 18 16 2 20 20 C 1.76194 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00278 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00196 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99343 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00269 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46962 * 90.00077 * 24 22 20 26 26 H 1.48498 * 109.47190 * 210.00144 * 24 22 20 27 27 H 1.48497 * 109.46973 * 330.00405 * 24 22 20 28 28 H 1.08996 * 109.47479 * 89.99511 * 1 2 3 29 29 H 1.09001 * 109.47435 * 210.00361 * 1 2 3 30 30 H 1.09007 * 109.47172 * 329.99836 * 1 2 3 31 31 H 1.08998 * 109.47167 * 329.99942 * 3 2 1 32 32 H 1.09001 * 109.47295 * 209.99696 * 3 2 1 33 33 H 1.08998 * 109.47380 * 59.99795 * 4 3 2 34 34 H 1.09005 * 109.47016 * 299.99971 * 4 3 2 35 35 H 1.08994 * 109.47285 * 60.00157 * 5 4 3 36 36 H 1.09001 * 109.47290 * 299.99420 * 5 4 3 37 37 H 1.09002 * 109.47374 * 263.38565 * 7 6 5 38 38 H 1.09007 * 109.46918 * 23.38203 * 7 6 5 39 39 H 1.09004 * 109.47345 * 143.37892 * 7 6 5 40 40 H 1.08002 * 126.81149 * 0.02562 * 11 10 8 41 41 H 1.09000 * 109.46750 * 300.00251 * 18 16 2 42 42 H 1.09000 * 109.46629 * 59.99437 * 18 16 2 43 43 H 0.97003 * 119.99282 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2170 3.0357 1.4425 6 7 3.4606 3.4588 2.8237 7 6 2.4835 4.3044 3.5140 8 6 4.5837 3.0703 3.4594 9 8 5.4036 2.3835 2.8804 10 6 4.8183 3.4774 4.8548 11 6 5.7968 3.0200 5.6976 12 7 5.6275 3.6622 6.8536 13 7 4.6261 4.4619 6.7560 14 7 4.1034 4.3930 5.5818 15 1 3.3383 4.8996 5.2672 16 6 2.1388 -1.1672 0.0005 17 8 3.3516 -1.1672 0.0001 18 6 1.3853 -2.4723 0.0005 19 16 2.5614 -3.8481 0.0005 20 6 1.4414 -5.2082 0.0013 21 1 0.3761 -5.0305 0.0020 22 6 1.9280 -6.5081 0.0010 23 7 3.2264 -6.7246 0.0006 24 14 0.7406 -7.9501 0.0025 25 1 0.4244 -8.3324 -1.3972 26 1 1.3626 -9.1028 0.7021 27 1 -0.5093 -7.5612 0.7038 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6084 2.0283 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 3.0416 0.9507 1.9563 34 1 1.5001 1.8407 1.9564 35 1 2.6275 3.7951 0.9289 36 1 4.1694 2.9058 0.9286 37 1 2.7904 5.3478 3.4416 38 1 1.5045 4.1807 3.0508 39 1 2.4283 4.0138 4.5632 40 1 6.5549 2.2850 5.4706 41 1 0.7583 -2.5298 0.8903 42 1 0.7590 -2.5302 -0.8897 43 1 3.5665 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001066873552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 21.242608 kcal Electronic energy + Delta-G solvation = -26496.132926 eV Core-core repulsion = 22512.045338 eV Total energy + Delta-G solvation = -3984.087588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.58553 -41.10147 -40.71816 -37.59447 -36.72670 -34.97546 -34.59858 -33.61159 -32.42016 -30.73853 -28.55157 -27.95151 -27.70526 -26.68848 -24.69899 -24.17630 -22.99383 -21.77987 -20.63996 -19.56081 -19.19583 -18.18308 -18.05381 -17.65336 -17.57931 -17.02340 -16.89417 -16.79681 -16.21198 -15.84375 -15.61686 -15.47041 -15.01545 -14.61880 -14.52111 -14.31521 -14.27273 -13.57592 -13.50784 -13.40294 -13.34118 -13.20873 -13.14641 -12.90382 -12.83885 -12.77022 -12.58649 -12.35989 -11.87698 -11.77253 -11.66225 -11.47720 -11.15372 -10.90527 -10.75465 -10.27494 -10.04082 -9.62269 -8.69762 -8.35588 -6.14768 -0.29763 1.07701 1.24068 1.27840 1.41865 1.45650 1.55228 1.57400 1.70129 1.88684 2.17051 2.26836 2.98399 2.99812 3.26193 3.41306 3.71449 3.76350 3.84310 3.95492 3.97588 4.01685 4.18617 4.21450 4.34129 4.37869 4.43130 4.47003 4.51824 4.64110 4.69521 4.81359 4.82898 4.96459 5.04164 5.12082 5.32902 5.39976 5.55902 5.63175 5.97924 6.18370 6.28205 6.73752 7.05121 7.06855 7.17137 8.73819 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.002138 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.533908 B =13094.834382 C =14169.863698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.118 3.882 4 C -0.141 4.141 5 C 0.122 3.878 6 N -0.603 5.603 7 C 0.040 3.960 8 C 0.587 3.413 9 O -0.553 6.553 10 C -0.062 4.062 11 C 0.021 3.979 12 N -0.295 5.295 13 N -0.059 5.059 14 N -0.352 5.352 15 H 0.468 0.532 16 C 0.525 3.475 17 O -0.567 6.567 18 C -0.122 4.122 19 S -0.161 6.161 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.256 1.256 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.209 0.791 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 30.283 5.267 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.005 4.005 4 C -0.181 4.181 5 C 0.000 4.000 6 N -0.334 5.334 7 C -0.102 4.102 8 C 0.372 3.628 9 O -0.428 6.428 10 C -0.196 4.196 11 C -0.139 4.139 12 N -0.159 5.159 13 N -0.041 5.041 14 N -0.091 5.091 15 H 0.328 0.672 16 C 0.312 3.688 17 O -0.445 6.445 18 C -0.273 4.273 19 S 0.066 5.934 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.180 1.180 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.076 30.462 6.350 32.413 hybrid contribution -1.641 -1.618 -1.057 2.535 sum -10.717 28.844 5.293 31.222 Atomic orbital electron populations 1.22119 0.76597 1.04859 1.03492 1.47873 1.08654 1.04673 1.73349 1.21504 0.97780 0.84695 0.96498 1.22226 1.01228 0.97038 0.97621 1.21593 1.01447 0.96319 0.80640 1.47802 1.19692 1.50734 1.15217 1.22649 0.94867 0.95289 0.97383 1.17061 0.82475 0.79876 0.83347 1.90937 1.46472 1.39131 1.66303 1.22150 1.00082 1.01422 0.95973 1.24223 0.99716 1.01363 0.88561 1.75009 1.11040 1.07125 1.22763 1.78115 1.06194 1.17668 1.02165 1.46717 1.25184 1.28594 1.08649 0.67159 1.20213 0.87291 0.85836 0.75442 1.90707 1.15921 1.87549 1.50322 1.23363 1.02576 0.95068 1.06258 1.85686 1.13002 0.97661 1.97032 1.23179 0.94559 0.92521 1.58894 0.89795 1.26187 0.97650 1.01820 0.93728 1.70203 1.14229 1.22475 1.47988 0.84920 0.77822 0.76156 0.78866 1.19161 1.20388 1.18015 0.90925 0.91345 0.87323 0.85285 0.92655 0.96140 0.88925 0.84504 0.91587 0.88331 0.85436 0.91345 0.77405 0.87605 0.87385 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.24 127.77 1.31 2.31 16 2 N -0.61 -14.93 2.87 -846.76 -2.43 -17.36 16 3 C 0.12 2.20 5.41 86.38 0.47 2.66 16 4 C -0.14 -2.43 5.86 30.59 0.18 -2.25 16 5 C 0.12 1.46 5.38 86.38 0.47 1.93 16 6 N -0.60 -7.01 2.87 -850.88 -2.44 -9.45 16 7 C 0.04 0.00 8.93 127.77 1.14 1.14 16 8 C 0.59 12.10 7.66 86.61 0.66 12.77 16 9 O -0.55 -17.31 16.51 -4.10 -0.07 -17.38 16 10 C -0.06 -1.10 6.74 40.41 0.27 -0.82 16 11 C 0.02 0.45 11.88 84.18 1.00 1.45 16 12 N -0.29 -6.73 12.35 -57.50 -0.71 -7.44 16 13 N -0.06 -1.09 13.35 37.02 0.49 -0.60 16 14 N -0.35 -4.12 6.06 -48.52 -0.29 -4.41 16 15 H 0.47 1.15 5.10 -219.89 -1.12 0.03 16 16 C 0.52 20.03 7.69 87.66 0.67 20.71 16 17 O -0.57 -27.67 15.44 -3.05 -0.05 -27.72 16 18 C -0.12 -4.93 4.71 71.24 0.34 -4.60 16 19 S -0.16 -9.21 20.57 -56.49 -1.16 -10.37 16 20 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.62 5.49 84.86 0.47 1.08 16 23 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 24 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.10 6.44 -2.39 -0.02 1.09 16 30 H 0.11 0.68 8.07 -2.38 -0.02 0.66 16 31 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 32 H 0.05 1.43 7.42 -2.39 -0.02 1.41 16 33 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.14 0.26 8.07 -2.39 -0.02 0.24 16 36 H 0.07 1.23 7.41 -2.39 -0.02 1.21 16 37 H 0.10 -0.50 7.81 -2.39 -0.02 -0.52 16 38 H 0.13 -0.64 8.02 -2.38 -0.02 -0.66 16 39 H 0.07 0.02 5.15 -2.39 -0.01 0.00 16 40 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.11 3.88 7.40 -2.39 -0.02 3.86 16 42 H 0.11 3.93 8.11 -2.40 -0.02 3.91 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -96.60 379.29 3.20 -93.40 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -0.07 Total: 6.66 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 7.62 Total: 5.60 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -5.10 Total: -96.11 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.11 Total: -45.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.16 Total: -10.37 kcal Total: -96.60 3.20 -93.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066873552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.643 kcal (2) G-P(sol) polarization free energy of solvation -96.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds