Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35627 * 125.67588 * 2 1 4 4 C 1.35523 * 108.85247 * 180.02562 * 3 2 1 5 5 Cl 1.73591 * 126.07620 * 180.02562 * 4 3 2 6 6 C 1.39893 * 107.84730 * 359.76405 * 4 3 2 7 7 C 1.37635 * 125.67443 * 180.02562 * 2 1 3 8 8 C 1.46670 * 126.22732 * 359.94088 * 7 2 1 9 9 O 1.21696 * 119.99553 * 355.04787 * 8 7 2 10 10 N 1.34773 * 120.00119 * 175.31214 * 8 7 2 11 11 C 1.46501 * 119.99700 * 184.53844 * 10 8 7 12 12 C 1.53008 * 109.46784 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.40203 * 304.83837 * 12 11 10 14 14 C 1.54299 * 109.40101 * 185.00263 * 12 11 10 15 15 N 1.48184 * 110.69051 * 200.49235 * 14 12 11 16 16 C 1.36936 * 118.51391 * 138.77079 * 15 14 12 17 17 H 1.07998 * 119.99782 * 210.34783 * 16 15 14 18 18 C 1.38814 * 119.99842 * 30.35680 * 16 15 14 19 19 N 1.31619 * 120.00213 * 10.32006 * 18 16 15 20 20 Si 1.86804 * 119.99682 * 190.32788 * 18 16 15 21 21 H 1.48488 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47054 * 119.99632 * 20 18 16 23 23 H 1.48502 * 109.46701 * 239.99301 * 20 18 16 24 24 C 1.44461 * 122.97180 * 318.74879 * 15 14 12 25 25 C 1.54876 * 109.33002 * 88.95892 * 24 15 14 26 26 C 1.47690 * 109.67880 * 290.10276 * 25 24 15 27 27 O 1.40522 * 109.40557 * 64.59888 * 12 11 10 28 28 H 1.09001 * 109.47086 * 273.54505 * 1 2 3 29 29 H 1.08996 * 109.47016 * 33.54334 * 1 2 3 30 30 H 1.09004 * 109.47099 * 153.54223 * 1 2 3 31 31 H 1.07994 * 125.57555 * 0.05396 * 3 2 1 32 32 H 1.07998 * 126.45109 * 180.27441 * 6 4 3 33 33 H 0.96994 * 120.00214 * 4.54490 * 10 8 7 34 34 H 1.09000 * 109.47419 * 299.99988 * 11 10 8 35 35 H 1.09001 * 109.47123 * 60.00903 * 11 10 8 36 36 H 1.08997 * 109.23310 * 320.79908 * 14 12 11 37 37 H 1.08997 * 109.23215 * 80.17743 * 14 12 11 38 38 H 0.96994 * 119.99852 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.49457 * 208.91318 * 24 15 14 40 40 H 1.09000 * 109.49688 * 328.97764 * 24 15 14 41 41 H 1.09002 * 109.43591 * 50.16243 * 25 24 15 42 42 H 1.08992 * 109.44206 * 170.03857 * 25 24 15 43 43 H 1.09004 * 108.64685 * 181.87662 * 26 25 24 44 44 H 1.08996 * 108.64496 * 299.85409 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 -0.0006 5 17 4.9377 1.7566 -0.0002 6 6 3.5782 -0.6892 0.0045 7 6 2.2677 -1.1181 -0.0005 8 6 1.8120 -2.5122 0.0001 9 8 0.6250 -2.7643 0.0921 10 7 2.7083 -3.5141 -0.0959 11 6 2.2482 -4.9014 -0.1955 12 6 3.4573 -5.8341 -0.2915 13 1 4.0871 -5.5257 -1.1260 14 6 2.9720 -7.2804 -0.5226 15 7 4.0224 -8.2527 -0.1391 16 6 3.6503 -9.3851 0.5349 17 1 4.3325 -9.8463 1.2337 18 6 2.3964 -9.9404 0.3199 19 7 1.6455 -9.5066 -0.6702 20 14 1.7745 -11.3031 1.4361 21 1 2.8012 -11.6076 2.4647 22 1 0.5214 -10.8649 2.1014 23 1 1.5067 -12.5205 0.6288 24 6 5.4212 -8.0603 -0.4447 25 6 6.0935 -7.2714 0.7061 26 6 5.6056 -5.8774 0.7048 27 8 4.1974 -5.7634 0.9009 28 1 -0.3633 0.0635 1.0257 29 1 -0.3633 0.8565 -0.5678 30 1 -0.3633 -0.9201 -0.4579 31 1 1.9089 2.1244 0.0008 32 1 4.4582 -1.3152 0.0096 33 1 3.6579 -3.3167 -0.0989 34 1 1.6637 -5.1548 0.6890 35 1 1.6291 -5.0159 -1.0853 36 1 2.0801 -7.4601 0.0777 37 1 2.7274 -7.4130 -1.5765 38 1 0.7692 -9.8943 -0.8202 39 1 5.9066 -9.0302 -0.5529 40 1 5.5166 -7.4998 -1.3747 41 1 5.8484 -7.7405 1.6590 42 1 7.1744 -7.2774 0.5670 43 1 6.1135 -5.3297 1.4987 44 1 5.8603 -5.4200 -0.2511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073690462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = -8.825722 kcal Electronic energy + Delta-G solvation = -27739.133186 eV Core-core repulsion = 23719.405280 eV Total energy + Delta-G solvation = -4019.727906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71104 -39.39266 -38.52957 -36.63127 -35.21909 -34.72276 -33.12511 -32.46406 -31.18938 -29.88456 -28.45777 -26.75112 -25.64732 -25.28309 -23.19510 -22.08730 -20.98583 -20.82803 -20.02866 -19.48241 -18.18784 -16.92462 -16.30741 -16.15783 -15.94689 -15.78613 -15.07011 -14.89428 -14.55890 -14.39873 -14.15286 -13.89986 -13.62483 -13.41050 -13.21045 -13.12318 -12.90085 -12.56437 -12.46106 -12.38318 -12.28534 -11.80997 -11.67727 -11.15416 -11.10517 -10.89496 -10.72840 -10.58992 -10.22054 -10.09307 -10.00716 -9.87484 -9.64982 -9.06044 -8.94748 -8.86918 -8.47584 -8.42851 -6.63811 -5.78480 -3.26572 1.19647 1.86201 2.18152 2.55714 3.24640 3.34902 3.39068 3.46154 3.48034 4.26023 4.49706 4.51505 4.59227 4.65630 4.92536 4.99652 5.12654 5.26018 5.38748 5.39566 5.45138 5.52110 5.61879 5.65948 5.72304 5.91100 5.97977 6.09090 6.14210 6.22413 6.28655 6.38432 6.45703 6.48613 6.58278 6.73456 6.77895 6.97985 7.17300 7.50629 7.57253 7.82289 7.95749 8.16544 8.49006 9.22544 9.87375 10.33404 11.29237 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.972300 B =10680.969758 C =12016.697087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.403 5.403 3 C 0.028 3.972 4 C -0.122 4.122 5 Cl -0.051 7.051 6 C -0.131 4.131 7 C -0.029 4.029 8 C 0.585 3.415 9 O -0.547 6.547 10 N -0.705 5.705 11 C 0.127 3.873 12 C 0.055 3.945 13 H 0.048 0.952 14 C 0.168 3.832 15 N -0.585 5.585 16 C -0.254 4.254 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.907 5.907 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.157 3.843 25 C -0.184 4.184 26 C 0.078 3.922 27 O -0.360 6.360 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.177 0.823 32 H 0.153 0.847 33 H 0.402 0.598 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.254 0.746 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 21.857 -0.897 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.075 5.075 3 C -0.109 4.109 4 C -0.155 4.155 5 Cl -0.023 7.023 6 C -0.157 4.157 7 C -0.143 4.143 8 C 0.372 3.628 9 O -0.427 6.427 10 N -0.355 5.355 11 C 0.003 3.997 12 C -0.006 4.006 13 H 0.066 0.934 14 C 0.042 3.958 15 N -0.306 5.306 16 C -0.384 4.384 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.551 5.551 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.029 3.971 25 C -0.224 4.224 26 C 0.001 3.999 27 O -0.278 6.278 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.194 0.806 32 H 0.171 0.829 33 H 0.236 0.764 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.149 21.660 -0.742 21.779 hybrid contribution 0.396 -0.450 0.409 0.726 sum 2.545 21.210 -0.333 21.365 Atomic orbital electron populations 1.22393 0.75025 1.05901 1.04260 1.43795 1.07215 1.04495 1.52009 1.21692 0.88952 0.92186 1.08071 1.19882 0.87977 0.91332 1.16279 1.98325 1.40713 1.65566 1.97696 1.21223 0.95360 0.93227 1.05912 1.20138 0.89566 0.88228 1.16398 1.16854 0.85842 0.83134 0.76981 1.90799 1.16194 1.84690 1.50999 1.45666 1.09675 1.06595 1.73573 1.21663 0.96905 0.77675 1.03410 1.23205 0.92033 0.98486 0.86839 0.93363 1.21613 0.92521 0.82469 0.99230 1.43544 1.00546 1.20144 1.66379 1.19195 1.00316 1.01896 1.17033 0.91910 1.25131 0.98839 0.98234 0.96986 1.69987 1.11347 1.44350 1.29440 0.86208 0.78681 0.81633 0.80147 1.20292 1.21535 1.21710 1.20682 0.86073 0.97386 0.92969 1.22296 0.98882 0.97626 1.03619 1.21327 0.82079 0.96839 0.99606 1.87455 1.16977 1.93056 1.30353 0.90109 0.89738 0.87192 0.80556 0.82905 0.76364 0.90090 0.89893 0.90045 0.94389 0.93629 0.93109 0.95365 0.91162 0.92341 0.91470 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.63 59.85 0.64 1.16 16 2 N -0.40 -4.18 3.16 -120.19 -0.38 -4.56 16 3 C 0.03 0.25 11.36 -16.84 -0.19 0.06 16 4 C -0.12 -1.24 6.66 -39.93 -0.27 -1.50 16 5 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 6 C -0.13 -1.42 10.35 -39.09 -0.40 -1.82 16 7 C -0.03 -0.35 6.88 -81.98 -0.56 -0.92 16 8 C 0.59 8.52 7.77 -12.86 -0.10 8.42 16 9 O -0.55 -9.43 14.66 5.19 0.08 -9.36 16 10 N -0.71 -9.76 5.48 -61.62 -0.34 -10.10 16 11 C 0.13 2.08 5.24 -4.04 -0.02 2.06 16 12 C 0.05 0.97 2.35 -26.05 -0.06 0.91 16 13 H 0.05 0.78 7.20 -51.93 -0.37 0.41 16 14 C 0.17 3.83 4.47 -2.43 -0.01 3.82 16 15 N -0.59 -14.18 2.57 -171.48 -0.44 -14.62 16 16 C -0.25 -6.88 9.40 -15.06 -0.14 -7.02 16 17 H 0.06 1.70 7.85 -52.49 -0.41 1.28 16 18 C 0.01 0.18 4.99 -17.43 -0.09 0.09 16 19 N -0.91 -25.74 10.96 55.49 0.61 -25.13 16 20 Si 0.90 21.78 29.57 -169.99 -5.03 16.75 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.16 3.16 5.68 -4.14 -0.02 3.13 16 25 C -0.18 -3.12 6.04 -28.31 -0.17 -3.29 16 26 C 0.08 1.22 6.05 34.59 0.21 1.42 16 27 O -0.36 -6.63 9.77 -34.09 -0.33 -6.96 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 1.13 6.23 -51.93 -0.32 0.80 16 31 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.15 1.40 7.45 -52.49 -0.39 1.01 16 33 H 0.40 4.73 7.35 -40.82 -0.30 4.43 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 2.12 6.41 -51.93 -0.33 1.78 16 37 H 0.04 0.93 7.97 -51.93 -0.41 0.51 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.05 1.04 7.97 -51.93 -0.41 0.62 16 40 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.48 7.27 -51.93 -0.38 0.10 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -31.74 371.82 -9.22 -40.96 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.28 Total: 2.89 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.20 Total: 6.52 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.55 Total: -54.41 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.26 Total: -16.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.74 -9.22 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073690462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.134 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds