Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35627 * 125.67588 * 2 1 4 4 C 1.35523 * 108.85247 * 180.02562 * 3 2 1 5 5 Cl 1.73591 * 126.07620 * 180.02562 * 4 3 2 6 6 C 1.39893 * 107.84730 * 359.76405 * 4 3 2 7 7 C 1.37635 * 125.67443 * 180.02562 * 2 1 3 8 8 C 1.46670 * 126.22732 * 359.94088 * 7 2 1 9 9 O 1.21696 * 119.99553 * 355.04787 * 8 7 2 10 10 N 1.34773 * 120.00119 * 175.31214 * 8 7 2 11 11 C 1.46501 * 119.99700 * 184.53844 * 10 8 7 12 12 C 1.53008 * 109.46784 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.40203 * 304.83837 * 12 11 10 14 14 C 1.54299 * 109.40101 * 185.00263 * 12 11 10 15 15 N 1.48184 * 110.69051 * 200.49235 * 14 12 11 16 16 C 1.36936 * 118.51391 * 138.77079 * 15 14 12 17 17 H 1.07998 * 119.99782 * 210.34783 * 16 15 14 18 18 C 1.38814 * 119.99842 * 30.35680 * 16 15 14 19 19 N 1.31619 * 120.00213 * 10.32006 * 18 16 15 20 20 Si 1.86804 * 119.99682 * 190.32788 * 18 16 15 21 21 H 1.48488 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47054 * 119.99632 * 20 18 16 23 23 H 1.48502 * 109.46701 * 239.99301 * 20 18 16 24 24 C 1.44461 * 122.97180 * 318.74879 * 15 14 12 25 25 C 1.54876 * 109.33002 * 88.95892 * 24 15 14 26 26 C 1.47690 * 109.67880 * 290.10276 * 25 24 15 27 27 O 1.40522 * 109.40557 * 64.59888 * 12 11 10 28 28 H 1.09001 * 109.47086 * 273.54505 * 1 2 3 29 29 H 1.08996 * 109.47016 * 33.54334 * 1 2 3 30 30 H 1.09004 * 109.47099 * 153.54223 * 1 2 3 31 31 H 1.07994 * 125.57555 * 0.05396 * 3 2 1 32 32 H 1.07998 * 126.45109 * 180.27441 * 6 4 3 33 33 H 0.96994 * 120.00214 * 4.54490 * 10 8 7 34 34 H 1.09000 * 109.47419 * 299.99988 * 11 10 8 35 35 H 1.09001 * 109.47123 * 60.00903 * 11 10 8 36 36 H 1.08997 * 109.23310 * 320.79908 * 14 12 11 37 37 H 1.08997 * 109.23215 * 80.17743 * 14 12 11 38 38 H 0.96994 * 119.99852 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.49457 * 208.91318 * 24 15 14 40 40 H 1.09000 * 109.49688 * 328.97764 * 24 15 14 41 41 H 1.09002 * 109.43591 * 50.16243 * 25 24 15 42 42 H 1.08992 * 109.44206 * 170.03857 * 25 24 15 43 43 H 1.09004 * 108.64685 * 181.87662 * 26 25 24 44 44 H 1.08996 * 108.64496 * 299.85409 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 -0.0006 5 17 4.9377 1.7566 -0.0002 6 6 3.5782 -0.6892 0.0045 7 6 2.2677 -1.1181 -0.0005 8 6 1.8120 -2.5122 0.0001 9 8 0.6250 -2.7643 0.0921 10 7 2.7083 -3.5141 -0.0959 11 6 2.2482 -4.9014 -0.1955 12 6 3.4573 -5.8341 -0.2915 13 1 4.0871 -5.5257 -1.1260 14 6 2.9720 -7.2804 -0.5226 15 7 4.0224 -8.2527 -0.1391 16 6 3.6503 -9.3851 0.5349 17 1 4.3325 -9.8463 1.2337 18 6 2.3964 -9.9404 0.3199 19 7 1.6455 -9.5066 -0.6702 20 14 1.7745 -11.3031 1.4361 21 1 2.8012 -11.6076 2.4647 22 1 0.5214 -10.8649 2.1014 23 1 1.5067 -12.5205 0.6288 24 6 5.4212 -8.0603 -0.4447 25 6 6.0935 -7.2714 0.7061 26 6 5.6056 -5.8774 0.7048 27 8 4.1974 -5.7634 0.9009 28 1 -0.3633 0.0635 1.0257 29 1 -0.3633 0.8565 -0.5678 30 1 -0.3633 -0.9201 -0.4579 31 1 1.9089 2.1244 0.0008 32 1 4.4582 -1.3152 0.0096 33 1 3.6579 -3.3167 -0.0989 34 1 1.6637 -5.1548 0.6890 35 1 1.6291 -5.0159 -1.0853 36 1 2.0801 -7.4601 0.0777 37 1 2.7274 -7.4130 -1.5765 38 1 0.7692 -9.8943 -0.8202 39 1 5.9066 -9.0302 -0.5529 40 1 5.5166 -7.4998 -1.3747 41 1 5.8484 -7.7405 1.6590 42 1 7.1744 -7.2774 0.5670 43 1 6.1135 -5.3297 1.4987 44 1 5.8603 -5.4200 -0.2511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073690462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = -29.220481 kcal Electronic energy + Delta-G solvation = -27740.017569 eV Core-core repulsion = 23719.405280 eV Total energy + Delta-G solvation = -4020.612289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52247 -40.69222 -39.83080 -37.34961 -36.87484 -36.09570 -34.27312 -33.65596 -32.90744 -31.02735 -29.82705 -27.44257 -27.15666 -27.02839 -24.62475 -23.29033 -22.37122 -21.62834 -21.54784 -20.66608 -19.13148 -18.74031 -17.76166 -17.31319 -17.02239 -16.84472 -16.65730 -16.16610 -15.83255 -15.62783 -15.38007 -15.06907 -14.81890 -14.62844 -14.48533 -14.19343 -13.95585 -13.87607 -13.81138 -13.74773 -13.31258 -13.16418 -13.01072 -12.80174 -12.41865 -12.39985 -12.28733 -11.99594 -11.85268 -11.77574 -11.43441 -11.35091 -11.14189 -10.58632 -10.27537 -10.25045 -9.73124 -9.26779 -8.60179 -7.85173 -5.35604 0.31372 1.13808 1.42645 1.43432 1.46213 1.55406 1.68093 2.21465 2.37571 2.51537 2.92843 3.29173 3.58594 3.63004 3.89186 4.02398 4.05875 4.14347 4.21652 4.23685 4.28864 4.37433 4.47206 4.53646 4.59468 4.63174 4.72734 4.78752 4.85232 4.90734 4.92708 5.16230 5.21835 5.25993 5.33958 5.41039 5.52897 5.64088 5.69084 5.71669 6.03055 6.42643 6.44105 6.58748 7.07716 7.19070 7.93835 8.32788 9.19108 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.972300 B =10680.969758 C =12016.697087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.407 5.407 3 C 0.050 3.950 4 C -0.141 4.141 5 Cl -0.045 7.045 6 C -0.121 4.121 7 C -0.062 4.062 8 C 0.584 3.416 9 O -0.583 6.583 10 N -0.695 5.695 11 C 0.140 3.860 12 C 0.076 3.924 13 H 0.076 0.924 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.260 4.260 17 H 0.058 0.942 18 C -0.046 4.046 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.148 3.852 25 C -0.170 4.170 26 C 0.067 3.933 27 O -0.378 6.378 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.213 0.787 32 H 0.167 0.833 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.249 0.751 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 24.494 -0.694 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.079 5.079 3 C -0.088 4.088 4 C -0.174 4.174 5 Cl -0.016 7.016 6 C -0.148 4.148 7 C -0.176 4.176 8 C 0.373 3.627 9 O -0.465 6.465 10 N -0.346 5.346 11 C 0.016 3.984 12 C 0.016 3.984 13 H 0.093 0.907 14 C 0.049 3.951 15 N -0.325 5.325 16 C -0.391 4.391 17 H 0.076 0.924 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.021 3.979 25 C -0.210 4.210 26 C -0.009 4.009 27 O -0.297 6.297 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.229 0.771 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.093 24.309 -0.533 24.657 hybrid contribution -0.095 -1.194 0.337 1.244 sum 3.999 23.115 -0.196 23.459 Atomic orbital electron populations 1.22494 0.74059 1.06162 1.05011 1.44023 1.07970 1.04341 1.51611 1.22294 0.88436 0.93107 1.05005 1.20013 0.88802 0.91238 1.17333 1.98329 1.40395 1.65156 1.97728 1.21456 0.95169 0.93983 1.04210 1.19815 0.90555 0.87438 1.19745 1.17195 0.85291 0.84210 0.75999 1.90781 1.17690 1.85377 1.52687 1.45415 1.10351 1.05292 1.73549 1.21271 0.96056 0.79180 1.01943 1.22781 0.92649 0.95147 0.87852 0.90651 1.21348 0.91311 0.85595 0.96809 1.43788 1.02348 1.19934 1.66446 1.19432 1.00276 1.02623 1.16747 0.92394 1.25809 0.99321 1.00597 0.98446 1.70139 1.11324 1.45545 1.30933 0.85297 0.77885 0.79182 0.78649 1.19377 1.22044 1.21634 1.20915 0.83969 0.97884 0.95112 1.22147 1.00869 0.97690 1.00337 1.21603 0.80543 0.96323 1.02394 1.87458 1.18842 1.92781 1.30620 0.89557 0.86188 0.89754 0.77064 0.81572 0.74867 0.92896 0.90316 0.94162 0.96800 0.94217 0.94116 0.93600 0.93994 0.88547 0.88622 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 10.63 127.77 1.36 2.29 16 2 N -0.41 -7.68 3.16 -534.17 -1.69 -9.37 16 3 C 0.05 0.73 11.36 83.48 0.95 1.68 16 4 C -0.14 -2.48 6.66 22.04 0.15 -2.34 16 5 Cl -0.04 -0.71 29.30 -2.72 -0.08 -0.79 16 6 C -0.12 -2.37 10.35 22.59 0.23 -2.14 16 7 C -0.06 -1.45 6.88 40.35 0.28 -1.17 16 8 C 0.58 17.04 7.77 86.45 0.67 17.71 16 9 O -0.58 -20.82 14.66 -4.33 -0.06 -20.88 16 10 N -0.70 -18.92 5.48 -467.07 -2.56 -21.48 16 11 C 0.14 4.71 5.24 86.38 0.45 5.16 16 12 C 0.08 2.67 2.35 31.04 0.07 2.75 16 13 H 0.08 2.26 7.20 -2.39 -0.02 2.25 16 14 C 0.18 8.29 4.47 86.50 0.39 8.68 16 15 N -0.60 -29.68 2.57 -696.44 -1.79 -31.48 16 16 C -0.26 -14.39 9.40 84.03 0.79 -13.60 16 17 H 0.06 3.19 7.85 -2.91 -0.02 3.17 16 18 C -0.05 -2.62 4.99 84.86 0.42 -2.19 16 19 N -0.93 -55.19 10.96 21.65 0.24 -54.95 16 20 Si 0.96 45.99 29.57 68.60 2.03 48.02 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 C 0.15 5.79 5.68 87.40 0.50 6.28 16 25 C -0.17 -5.37 6.04 29.57 0.18 -5.19 16 26 C 0.07 1.87 6.05 70.32 0.43 2.29 16 27 O -0.38 -13.43 9.77 -144.89 -1.42 -14.84 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.75 6.23 -2.38 -0.01 1.74 16 31 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.17 2.61 7.45 -2.91 -0.02 2.59 16 33 H 0.41 8.99 7.35 -92.71 -0.68 8.31 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.04 2.21 6.41 -2.39 -0.02 2.19 16 37 H 0.01 0.71 7.97 -2.39 -0.02 0.69 16 38 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.04 1.64 7.97 -2.39 -0.02 1.62 16 40 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.45 7.27 -2.39 -0.02 1.43 16 Total: -1.00 -72.16 371.82 1.87 -70.29 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.34 Total: 15.26 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.86 Total: 20.22 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -5.80 Total: -117.28 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.48 Total: -35.72 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -72.16 1.87 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073690462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.069 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds