Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35627 * 125.67982 * 2 1 4 4 C 1.35520 * 108.85625 * 180.02562 * 3 2 1 5 5 Cl 1.73591 * 126.07481 * 179.97438 * 4 3 2 6 6 C 1.39894 * 107.84844 * 0.02562 * 4 3 2 7 7 C 1.37641 * 125.67679 * 180.34528 * 2 1 3 8 8 C 1.46670 * 126.22040 * 359.97132 * 7 2 1 9 9 O 1.21694 * 120.00174 * 7.30526 * 8 7 2 10 10 N 1.34785 * 119.99956 * 187.30449 * 8 7 2 11 11 C 1.46497 * 119.99890 * 185.48521 * 10 8 7 12 12 C 1.52997 * 109.47121 * 179.97438 * 11 10 8 13 13 H 1.09010 * 108.56662 * 57.94666 * 12 11 10 14 14 C 1.46911 * 108.62229 * 175.75733 * 12 11 10 15 15 N 1.50117 * 106.78130 * 177.92395 * 14 12 11 16 16 C 1.36940 * 120.63857 * 111.32079 * 15 14 12 17 17 H 1.07996 * 119.99591 * 152.02501 * 16 15 14 18 18 C 1.38808 * 119.99832 * 332.02320 * 16 15 14 19 19 N 1.31619 * 120.00135 * 344.24407 * 18 16 15 20 20 Si 1.86802 * 119.99765 * 164.24728 * 18 16 15 21 21 H 1.48492 * 109.47488 * 89.99906 * 20 18 16 22 22 H 1.48509 * 109.46930 * 209.99909 * 20 18 16 23 23 H 1.48504 * 109.46999 * 329.99727 * 20 18 16 24 24 C 1.43425 * 118.72351 * 291.34648 * 15 14 12 25 25 C 1.55331 * 116.24034 * 89.35721 * 24 15 14 26 26 C 1.55194 * 108.87013 * 319.46206 * 25 24 15 27 27 O 1.39645 * 110.56794 * 322.14331 * 26 25 24 28 28 H 1.08999 * 109.46827 * 95.48749 * 1 2 3 29 29 H 1.08995 * 109.47319 * 215.48344 * 1 2 3 30 30 H 1.08995 * 109.47035 * 335.49103 * 1 2 3 31 31 H 1.08002 * 125.57214 * 0.03104 * 3 2 1 32 32 H 1.07995 * 126.45039 * 179.97438 * 6 4 3 33 33 H 0.96995 * 119.99889 * 5.47765 * 10 8 7 34 34 H 1.08994 * 109.47146 * 300.00150 * 11 10 8 35 35 H 1.09004 * 109.47390 * 59.99859 * 11 10 8 36 36 H 1.08999 * 109.99085 * 297.23617 * 14 12 11 37 37 H 1.08997 * 109.99456 * 58.60626 * 14 12 11 38 38 H 0.97001 * 119.99505 * 180.02562 * 19 18 16 39 39 H 1.08996 * 108.12591 * 327.59025 * 24 15 14 40 40 H 1.09009 * 107.96146 * 210.98377 * 24 15 14 41 41 H 1.08998 * 109.56723 * 199.64655 * 25 24 15 42 42 H 1.08998 * 109.57296 * 79.27464 * 25 24 15 43 43 H 1.08998 * 109.25255 * 201.86651 * 26 25 24 44 44 H 1.08993 * 109.25612 * 82.42745 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 -0.0006 5 17 4.9377 1.7566 -0.0014 6 6 3.5782 -0.6893 -0.0015 7 6 2.2677 -1.1181 -0.0067 8 6 1.8120 -2.5121 -0.0145 9 8 0.6293 -2.7649 -0.1495 10 7 2.7031 -3.5133 0.1278 11 6 2.2668 -4.9059 0.0000 12 6 3.4643 -5.8362 0.2034 13 1 3.8944 -5.6388 1.1854 14 6 2.9891 -7.2260 0.1732 15 7 4.1994 -8.1013 0.3242 16 6 4.3903 -8.8378 1.4627 17 1 4.9517 -9.7595 1.4218 18 6 3.8621 -8.3998 2.6694 19 7 3.4551 -7.1546 2.7963 20 14 3.7292 -9.5776 4.1132 21 1 4.9743 -9.5144 4.9199 22 1 2.5709 -9.1942 4.9598 23 1 3.5366 -10.9606 3.6076 24 6 5.1522 -8.1508 -0.7467 25 6 6.2968 -7.1019 -0.6966 26 6 5.7102 -5.7403 -0.2380 27 8 4.4423 -5.5419 -0.7886 28 1 -0.3633 -0.0983 -1.0230 29 1 -0.3634 -0.8368 0.5965 30 1 -0.3633 0.9350 0.4263 31 1 1.9089 2.1244 0.0005 32 1 4.4583 -1.3152 -0.0026 33 1 3.6333 -3.3116 0.3146 34 1 1.5083 -5.1195 0.7530 35 1 1.8476 -5.0657 -0.9934 36 1 2.2974 -7.4014 0.9971 37 1 2.4973 -7.4312 -0.7776 38 1 3.0864 -6.8485 3.6397 39 1 4.6141 -8.0210 -1.6856 40 1 5.6020 -9.1437 -0.7508 41 1 6.7372 -6.9945 -1.6878 42 1 7.0597 -7.4275 0.0106 43 1 6.3721 -4.9367 -0.5609 44 1 5.6357 -5.7289 0.8494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073690463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = -4.871080 kcal Electronic energy + Delta-G solvation = -28148.806803 eV Core-core repulsion = 24129.250383 eV Total energy + Delta-G solvation = -4019.556420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.58784 -39.37494 -38.47711 -36.52608 -35.03870 -34.65061 -32.97633 -32.12976 -31.25309 -29.68999 -28.40712 -26.65752 -25.56771 -25.29892 -23.08785 -21.99251 -20.87924 -20.68510 -19.67021 -19.49542 -18.08040 -17.05742 -16.08874 -16.01782 -15.83464 -15.48214 -14.89492 -14.71986 -14.39498 -14.25997 -14.08691 -13.93668 -13.69272 -13.29894 -13.07306 -13.02122 -12.98534 -12.57896 -12.40807 -12.27651 -11.95858 -11.59185 -11.40257 -11.24061 -10.99822 -10.85650 -10.76190 -10.50285 -10.16794 -10.03017 -9.89501 -9.67139 -9.50253 -8.88176 -8.82000 -8.77338 -8.53691 -8.34603 -6.78437 -5.93893 -3.37003 1.32694 1.96693 2.29972 2.68512 3.31211 3.39100 3.39413 3.41560 3.54871 4.41383 4.58292 4.66724 4.68636 4.84640 5.03303 5.09301 5.22850 5.27619 5.35432 5.49041 5.69314 5.78307 5.82994 5.92433 5.96828 6.12913 6.27743 6.32625 6.39673 6.45365 6.52255 6.59378 6.67859 6.70836 6.81242 6.84255 6.89443 6.95689 7.11680 7.28843 7.70630 7.72434 8.13284 8.32770 8.34330 9.06059 9.72739 10.28741 11.14993 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002888 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.534783 B = 9691.762716 C =10284.464139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.404 5.404 3 C 0.026 3.974 4 C -0.121 4.121 5 Cl -0.053 7.053 6 C -0.130 4.130 7 C -0.027 4.027 8 C 0.584 3.416 9 O -0.554 6.554 10 N -0.697 5.697 11 C 0.123 3.877 12 C 0.058 3.942 13 H 0.112 0.888 14 C 0.146 3.854 15 N -0.587 5.587 16 C -0.249 4.249 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.909 5.909 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.161 3.839 25 C -0.171 4.171 26 C 0.067 3.933 27 O -0.370 6.370 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.177 0.823 32 H 0.154 0.846 33 H 0.404 0.596 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.019 0.981 38 H 0.256 0.744 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 15.966 -5.295 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.077 5.077 3 C -0.111 4.111 4 C -0.154 4.154 5 Cl -0.024 7.024 6 C -0.156 4.156 7 C -0.142 4.142 8 C 0.370 3.630 9 O -0.435 6.435 10 N -0.347 5.347 11 C 0.000 4.000 12 C -0.001 4.001 13 H 0.129 0.871 14 C 0.021 3.979 15 N -0.308 5.308 16 C -0.379 4.379 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.554 5.554 20 Si 0.735 3.265 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.288 6.288 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.194 0.806 32 H 0.172 0.828 33 H 0.239 0.761 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.927 15.887 -5.448 17.049 hybrid contribution 0.760 -0.253 1.130 1.385 sum -2.168 15.635 -4.318 16.364 Atomic orbital electron populations 1.22270 0.75146 1.04793 1.04633 1.43781 1.07130 1.04555 1.52248 1.21665 0.88958 0.92095 1.08363 1.19880 0.87913 0.91342 1.16315 1.98321 1.40807 1.65578 1.97704 1.21262 0.95489 0.93194 1.05646 1.20189 0.89534 0.88264 1.16176 1.16863 0.85754 0.83154 0.77219 1.90784 1.16261 1.84803 1.51604 1.45618 1.12033 1.06232 1.70769 1.21770 0.98081 0.78364 1.01816 1.22260 0.88781 0.95717 0.93331 0.87053 1.20673 0.90426 0.87879 0.98930 1.44062 1.18396 1.51656 1.16672 1.19235 1.32443 1.00941 0.85274 0.91483 1.24988 1.01581 0.95597 0.97145 1.69803 1.46460 1.13823 1.25311 0.86256 0.77350 0.80644 0.82252 1.21464 1.21539 1.20553 1.20388 0.89996 0.95246 0.91174 1.23568 1.00263 0.97999 0.99424 1.22355 0.84850 0.95404 0.98515 1.87513 1.15221 1.87653 1.38424 0.90089 0.88040 0.89694 0.80630 0.82800 0.76147 0.90095 0.91802 0.88148 0.96283 0.93436 0.95054 0.94929 0.93200 0.92489 0.93035 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.34 59.85 0.62 1.26 16 2 N -0.40 -4.64 3.16 -120.20 -0.38 -5.02 16 3 C 0.03 0.26 11.35 -16.84 -0.19 0.07 16 4 C -0.12 -1.39 6.66 -39.93 -0.27 -1.66 16 5 Cl -0.05 -0.55 29.30 -51.86 -1.52 -2.07 16 6 C -0.13 -1.62 10.34 -39.09 -0.40 -2.03 16 7 C -0.03 -0.38 6.88 -81.98 -0.56 -0.94 16 8 C 0.58 9.37 7.76 -12.85 -0.10 9.27 16 9 O -0.55 -10.11 14.93 5.19 0.08 -10.03 16 10 N -0.70 -11.12 5.40 -61.62 -0.33 -11.45 16 11 C 0.12 2.21 5.24 -4.04 -0.02 2.19 16 12 C 0.06 1.14 1.94 -29.65 -0.06 1.09 16 13 H 0.11 2.49 5.05 -51.92 -0.26 2.23 16 14 C 0.15 3.22 4.70 -4.94 -0.02 3.20 16 15 N -0.59 -13.86 2.60 -174.50 -0.45 -14.32 16 16 C -0.25 -6.41 9.60 -15.06 -0.14 -6.55 16 17 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 18 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16 19 N -0.91 -23.28 9.45 55.49 0.52 -22.75 16 20 Si 0.91 20.62 29.58 -169.99 -5.03 15.59 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.16 3.35 5.33 -4.43 -0.02 3.33 16 25 C -0.17 -3.17 6.75 -24.33 -0.16 -3.33 16 26 C 0.07 1.23 6.38 38.32 0.24 1.47 16 27 O -0.37 -7.08 9.54 -31.95 -0.30 -7.38 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.09 6.84 -51.93 -0.36 0.74 16 30 H 0.08 0.48 8.12 -51.93 -0.42 0.05 16 31 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.75 7.52 -52.49 -0.39 1.35 16 33 H 0.40 5.91 7.30 -40.82 -0.30 5.62 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 2.43 6.20 -51.93 -0.32 2.11 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.03 0.64 7.99 -51.93 -0.41 0.22 16 40 H 0.03 0.67 7.96 -51.92 -0.41 0.26 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.33 6.66 -51.93 -0.35 0.98 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -28.47 368.41 -9.21 -37.68 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.16 Total: 6.80 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.18 Total: 7.41 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.64 Total: -53.54 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.23 Total: -17.42 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.52 Total: -2.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.47 -9.21 -37.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073690463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.808 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds