Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35627 * 125.67982 * 2 1 4 4 C 1.35520 * 108.85625 * 180.02562 * 3 2 1 5 5 Cl 1.73591 * 126.07481 * 179.97438 * 4 3 2 6 6 C 1.39894 * 107.84844 * 0.02562 * 4 3 2 7 7 C 1.37641 * 125.67679 * 180.34528 * 2 1 3 8 8 C 1.46670 * 126.22040 * 359.97132 * 7 2 1 9 9 O 1.21694 * 120.00174 * 7.30526 * 8 7 2 10 10 N 1.34785 * 119.99956 * 187.30449 * 8 7 2 11 11 C 1.46497 * 119.99890 * 185.48521 * 10 8 7 12 12 C 1.52997 * 109.47121 * 179.97438 * 11 10 8 13 13 H 1.09010 * 108.56662 * 57.94666 * 12 11 10 14 14 C 1.46911 * 108.62229 * 175.75733 * 12 11 10 15 15 N 1.50117 * 106.78130 * 177.92395 * 14 12 11 16 16 C 1.36940 * 120.63857 * 111.32079 * 15 14 12 17 17 H 1.07996 * 119.99591 * 152.02501 * 16 15 14 18 18 C 1.38808 * 119.99832 * 332.02320 * 16 15 14 19 19 N 1.31619 * 120.00135 * 344.24407 * 18 16 15 20 20 Si 1.86802 * 119.99765 * 164.24728 * 18 16 15 21 21 H 1.48492 * 109.47488 * 89.99906 * 20 18 16 22 22 H 1.48509 * 109.46930 * 209.99909 * 20 18 16 23 23 H 1.48504 * 109.46999 * 329.99727 * 20 18 16 24 24 C 1.43425 * 118.72351 * 291.34648 * 15 14 12 25 25 C 1.55331 * 116.24034 * 89.35721 * 24 15 14 26 26 C 1.55194 * 108.87013 * 319.46206 * 25 24 15 27 27 O 1.39645 * 110.56794 * 322.14331 * 26 25 24 28 28 H 1.08999 * 109.46827 * 95.48749 * 1 2 3 29 29 H 1.08995 * 109.47319 * 215.48344 * 1 2 3 30 30 H 1.08995 * 109.47035 * 335.49103 * 1 2 3 31 31 H 1.08002 * 125.57214 * 0.03104 * 3 2 1 32 32 H 1.07995 * 126.45039 * 179.97438 * 6 4 3 33 33 H 0.96995 * 119.99889 * 5.47765 * 10 8 7 34 34 H 1.08994 * 109.47146 * 300.00150 * 11 10 8 35 35 H 1.09004 * 109.47390 * 59.99859 * 11 10 8 36 36 H 1.08999 * 109.99085 * 297.23617 * 14 12 11 37 37 H 1.08997 * 109.99456 * 58.60626 * 14 12 11 38 38 H 0.97001 * 119.99505 * 180.02562 * 19 18 16 39 39 H 1.08996 * 108.12591 * 327.59025 * 24 15 14 40 40 H 1.09009 * 107.96146 * 210.98377 * 24 15 14 41 41 H 1.08998 * 109.56723 * 199.64655 * 25 24 15 42 42 H 1.08998 * 109.57296 * 79.27464 * 25 24 15 43 43 H 1.08998 * 109.25255 * 201.86651 * 26 25 24 44 44 H 1.08993 * 109.25612 * 82.42745 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 -0.0006 5 17 4.9377 1.7566 -0.0014 6 6 3.5782 -0.6893 -0.0015 7 6 2.2677 -1.1181 -0.0067 8 6 1.8120 -2.5121 -0.0145 9 8 0.6293 -2.7649 -0.1495 10 7 2.7031 -3.5133 0.1278 11 6 2.2668 -4.9059 0.0000 12 6 3.4643 -5.8362 0.2034 13 1 3.8944 -5.6388 1.1854 14 6 2.9891 -7.2260 0.1732 15 7 4.1994 -8.1013 0.3242 16 6 4.3903 -8.8378 1.4627 17 1 4.9517 -9.7595 1.4218 18 6 3.8621 -8.3998 2.6694 19 7 3.4551 -7.1546 2.7963 20 14 3.7292 -9.5776 4.1132 21 1 4.9743 -9.5144 4.9199 22 1 2.5709 -9.1942 4.9598 23 1 3.5366 -10.9606 3.6076 24 6 5.1522 -8.1508 -0.7467 25 6 6.2968 -7.1019 -0.6966 26 6 5.7102 -5.7403 -0.2380 27 8 4.4423 -5.5419 -0.7886 28 1 -0.3633 -0.0983 -1.0230 29 1 -0.3634 -0.8368 0.5965 30 1 -0.3633 0.9350 0.4263 31 1 1.9089 2.1244 0.0005 32 1 4.4583 -1.3152 -0.0026 33 1 3.6333 -3.3116 0.3146 34 1 1.5083 -5.1195 0.7530 35 1 1.8476 -5.0657 -0.9934 36 1 2.2974 -7.4014 0.9971 37 1 2.4973 -7.4312 -0.7776 38 1 3.0864 -6.8485 3.6397 39 1 4.6141 -8.0210 -1.6856 40 1 5.6020 -9.1437 -0.7508 41 1 6.7372 -6.9945 -1.6878 42 1 7.0597 -7.4275 0.0106 43 1 6.3721 -4.9367 -0.5609 44 1 5.6357 -5.7289 0.8494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073690463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -21.350879 kcal Electronic energy + Delta-G solvation = -28149.521421 eV Core-core repulsion = 24129.250383 eV Total energy + Delta-G solvation = -4020.271038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50958 -40.85927 -39.84869 -37.35285 -36.77512 -36.05668 -34.06467 -33.59639 -32.93215 -30.88930 -29.88828 -27.43556 -27.09418 -27.04691 -24.59681 -23.29577 -22.42283 -21.62088 -21.29614 -20.68277 -19.15312 -18.82485 -17.67654 -17.21370 -16.91679 -16.72451 -16.59197 -16.17833 -15.76533 -15.57037 -15.51386 -15.06550 -14.87180 -14.70217 -14.46765 -14.19088 -13.91651 -13.87594 -13.77676 -13.55672 -13.25078 -13.17070 -12.94804 -12.61866 -12.48899 -12.40269 -12.29958 -11.93781 -11.86220 -11.75044 -11.36602 -11.18345 -11.12493 -10.55418 -10.27116 -10.17678 -9.73265 -9.25944 -8.65144 -7.88178 -5.33610 0.32620 1.13934 1.42808 1.47786 1.51883 1.58926 1.72272 2.22944 2.43664 2.53175 3.12819 3.29960 3.52275 3.66641 3.89902 4.02330 4.16679 4.23228 4.29468 4.38134 4.39324 4.43149 4.55496 4.57621 4.72455 4.74867 4.78849 4.81768 4.88715 4.97837 5.09788 5.20280 5.20762 5.31369 5.36218 5.42880 5.43921 5.50741 5.68305 5.70049 6.04631 6.39636 6.48037 6.54151 7.09184 7.13293 7.83691 8.38022 9.17243 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002888 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.534783 B = 9691.762716 C =10284.464139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.407 5.407 3 C 0.052 3.948 4 C -0.142 4.142 5 Cl -0.045 7.045 6 C -0.126 4.126 7 C -0.061 4.061 8 C 0.583 3.417 9 O -0.583 6.583 10 N -0.695 5.695 11 C 0.137 3.863 12 C 0.077 3.923 13 H 0.089 0.911 14 C 0.148 3.852 15 N -0.602 5.602 16 C -0.265 4.265 17 H 0.061 0.939 18 C -0.033 4.033 19 N -0.917 5.917 20 Si 0.960 3.040 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.154 3.846 25 C -0.164 4.164 26 C 0.068 3.932 27 O -0.367 6.367 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.216 0.784 32 H 0.159 0.841 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.251 0.749 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 18.003 -5.872 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.079 5.079 3 C -0.086 4.086 4 C -0.174 4.174 5 Cl -0.017 7.017 6 C -0.152 4.152 7 C -0.175 4.175 8 C 0.372 3.628 9 O -0.465 6.465 10 N -0.345 5.345 11 C 0.012 3.988 12 C 0.018 3.982 13 H 0.106 0.894 14 C 0.023 3.977 15 N -0.323 5.323 16 C -0.395 4.395 17 H 0.078 0.922 18 C -0.229 4.229 19 N -0.562 5.562 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.204 1.204 24 C 0.026 3.974 25 C -0.205 4.205 26 C -0.010 4.010 27 O -0.285 6.285 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.233 0.767 32 H 0.177 0.823 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.371 17.923 -6.042 19.062 hybrid contribution 0.619 -0.838 1.266 1.640 sum -1.752 17.085 -4.775 17.826 Atomic orbital electron populations 1.22420 0.73860 1.05965 1.04810 1.44026 1.08026 1.04225 1.51633 1.22308 0.88262 0.93130 1.04925 1.20006 0.88914 0.91051 1.17470 1.98323 1.40526 1.65082 1.97738 1.21432 0.95237 0.94132 1.04439 1.19847 0.90486 0.87626 1.19515 1.17177 0.85217 0.84142 0.76260 1.90760 1.17377 1.85421 1.52991 1.45482 1.12470 1.05461 1.71061 1.21428 0.96801 0.79375 1.01166 1.21813 0.89229 0.94807 0.92373 0.89351 1.20603 0.89897 0.89130 0.98080 1.44191 1.19431 1.51994 1.16706 1.19367 1.32707 1.01169 0.86247 0.92167 1.25552 1.01700 0.96769 0.98905 1.69941 1.46522 1.14525 1.25254 0.85409 0.76826 0.79111 0.79765 1.21445 1.21957 1.20410 1.20500 0.90416 0.96078 0.90369 1.23486 0.99104 0.96983 1.00944 1.22401 0.84972 0.96639 0.96995 1.87511 1.15443 1.87516 1.38073 0.89732 0.90340 0.85733 0.76737 0.82327 0.75393 0.91606 0.91889 0.90636 0.95660 0.93966 0.94685 0.95180 0.90391 0.92836 0.89645 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.34 127.77 1.32 2.44 16 2 N -0.41 -8.56 3.16 -534.19 -1.69 -10.25 16 3 C 0.05 0.87 11.35 83.48 0.95 1.82 16 4 C -0.14 -2.93 6.66 22.04 0.15 -2.78 16 5 Cl -0.05 -0.85 29.30 -2.72 -0.08 -0.93 16 6 C -0.13 -2.99 10.34 22.59 0.23 -2.76 16 7 C -0.06 -1.64 6.88 40.35 0.28 -1.36 16 8 C 0.58 18.94 7.76 86.44 0.67 19.61 16 9 O -0.58 -21.76 14.93 -4.33 -0.06 -21.82 16 10 N -0.70 -22.46 5.40 -467.09 -2.52 -24.98 16 11 C 0.14 5.03 5.24 86.38 0.45 5.48 16 12 C 0.08 3.09 1.94 28.70 0.06 3.14 16 13 H 0.09 4.05 5.05 -2.38 -0.01 4.04 16 14 C 0.15 6.67 4.70 83.78 0.39 7.07 16 15 N -0.60 -28.73 2.60 -706.01 -1.83 -30.57 16 16 C -0.26 -13.80 9.60 84.03 0.81 -13.00 16 17 H 0.06 3.15 7.86 -2.91 -0.02 3.13 16 18 C -0.03 -1.69 4.97 84.86 0.42 -1.27 16 19 N -0.92 -48.02 9.45 21.65 0.20 -47.82 16 20 Si 0.96 42.88 29.58 68.60 2.03 44.90 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.15 6.36 5.33 87.75 0.47 6.83 16 25 C -0.16 -5.81 6.75 32.15 0.22 -5.59 16 26 C 0.07 2.40 6.38 72.73 0.46 2.86 16 27 O -0.37 -13.76 9.54 -137.24 -1.31 -15.07 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.67 6.84 -2.39 -0.02 1.65 16 30 H 0.12 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.16 3.45 7.52 -2.91 -0.02 3.43 16 33 H 0.41 12.05 7.30 -92.71 -0.68 11.37 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.08 3.79 6.20 -2.39 -0.01 3.78 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 39 H 0.03 1.40 7.99 -2.39 -0.02 1.38 16 40 H 0.03 1.23 7.96 -2.38 -0.02 1.21 16 41 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.04 1.54 6.66 -2.39 -0.02 1.53 16 Total: -1.00 -61.75 368.41 1.96 -59.79 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.35 Total: 24.24 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.88 Total: 22.50 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -5.84 Total: -113.61 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.37 Total: -36.89 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -61.75 1.96 -59.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073690463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.441 kcal (2) G-P(sol) polarization free energy of solvation -61.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds