Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00013 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99711 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.46704 * 179.97438 * 9 7 6 11 11 C 1.76210 * 99.99828 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99512 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99860 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46954 * 89.99770 * 15 13 11 17 17 H 1.48494 * 109.47026 * 209.99820 * 15 13 11 18 18 H 1.48501 * 109.47073 * 329.99857 * 15 13 11 19 19 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 20 20 C 1.34769 * 119.99686 * 84.99974 * 19 2 1 21 21 O 1.21591 * 120.00299 * 359.97438 * 20 19 2 22 22 C 1.47527 * 119.99746 * 180.02562 * 20 19 2 23 23 C 1.36593 * 125.77299 * 179.71649 * 22 20 19 24 24 N 1.34810 * 106.84167 * 179.89751 * 23 22 20 25 25 C 1.46501 * 126.59541 * 180.13230 * 24 23 22 26 26 N 1.40206 * 106.81147 * 0.35741 * 24 23 22 27 27 N 1.28761 * 108.36624 * 359.77381 * 26 24 23 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 36 36 H 1.08993 * 109.47443 * 299.99991 * 9 7 6 37 37 H 1.09004 * 109.46924 * 60.00453 * 9 7 6 38 38 H 0.97002 * 120.00030 * 180.02562 * 14 13 11 39 39 H 0.97000 * 119.99634 * 265.00306 * 19 2 1 40 40 H 1.07999 * 126.57901 * 0.04283 * 23 22 20 41 41 H 1.08995 * 109.47188 * 270.29096 * 25 24 23 42 42 H 1.08995 * 109.47125 * 30.29668 * 25 24 23 43 43 H 1.09000 * 109.47119 * 150.29663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3398 2.7754 8 8 6.1583 -0.8000 2.0242 9 6 5.8762 -2.0503 4.0059 10 16 7.6801 -1.9227 4.0820 11 6 7.9871 -2.8127 5.5715 12 1 7.1634 -3.2353 6.1275 13 6 9.2875 -2.9697 6.0306 14 7 10.2915 -2.4542 5.3532 15 14 9.6131 -3.9138 7.6093 16 1 9.8151 -5.3508 7.2939 17 1 10.8312 -3.3751 8.2659 18 1 8.4518 -3.7660 8.5229 19 7 2.0184 -0.6906 -1.1962 20 6 2.1472 -0.0183 -2.3570 21 8 1.8575 1.1614 -2.4118 22 6 2.6384 -0.7138 -3.5617 23 6 2.8084 -0.1516 -4.7949 24 7 3.2731 -1.1227 -5.6063 25 6 3.6068 -0.9889 -7.0265 26 7 3.3706 -2.2868 -4.8309 27 7 2.9890 -2.0094 -3.6328 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.4258 -1.7358 3.1107 36 1 5.4413 -1.5911 4.8935 37 1 5.5882 -3.1006 3.9619 38 1 11.2003 -2.5642 5.6739 39 1 2.2491 -1.6318 -1.1525 40 1 2.6108 0.8747 -5.0671 41 1 2.7240 -1.2029 -7.6289 42 1 3.9452 0.0278 -7.2259 43 1 4.3996 -1.6922 -7.2812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = -17.040911 kcal Electronic energy + Delta-G solvation = -25786.643184 eV Core-core repulsion = 21800.895498 eV Total energy + Delta-G solvation = -3985.747686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.22863 -40.83807 -40.41771 -37.67573 -35.72507 -35.49801 -34.57972 -32.97272 -31.91324 -31.16907 -29.20017 -28.67004 -27.64903 -25.24938 -24.13678 -23.22811 -22.24539 -21.67737 -21.42544 -19.85223 -19.18181 -17.80693 -17.52207 -17.28782 -17.19948 -16.99555 -16.87442 -16.63199 -15.93693 -15.71012 -15.64644 -15.40848 -14.96311 -14.78490 -14.46976 -14.39872 -14.14500 -13.97759 -13.56305 -13.53280 -13.16182 -13.15510 -12.97146 -12.88771 -12.64185 -12.42834 -12.38036 -12.29377 -11.90859 -11.71733 -11.35137 -11.24288 -11.13889 -10.96167 -10.45453 -10.26782 -10.16542 -10.02791 -8.66766 -8.34141 -6.12563 0.13845 0.58319 1.16841 1.27571 1.43146 1.47798 1.58253 1.62186 2.11530 2.22261 2.26284 2.30282 2.99911 3.17825 3.32607 3.47539 3.75231 3.82006 3.89231 3.95448 4.05384 4.10837 4.31915 4.36125 4.44180 4.48477 4.51263 4.52186 4.63685 4.67036 4.75342 4.85416 4.90958 5.04620 5.14343 5.35215 5.42267 5.43074 5.44171 5.50069 6.20402 6.38051 6.53692 6.86620 7.06937 7.11339 7.27108 8.75147 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.001895 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.517730 B =14769.365473 C =16165.387568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.119 3.881 6 N -0.710 5.710 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.257 1.257 19 N -0.706 5.706 20 C 0.607 3.393 21 O -0.566 6.566 22 C -0.131 4.131 23 C 0.107 3.893 24 N -0.352 5.352 25 C 0.074 3.926 26 N -0.097 5.097 27 N -0.227 5.227 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.419 0.581 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.238 0.762 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.099 3.595 -20.847 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.070 5.930 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 N -0.357 5.357 20 C 0.391 3.609 21 O -0.444 6.444 22 C -0.272 4.272 23 C -0.051 4.051 24 N -0.136 5.136 25 C -0.065 4.065 26 N -0.078 5.078 27 N -0.100 5.100 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.257 0.743 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.458 3.862 -22.203 32.530 hybrid contribution -0.412 -0.621 1.556 1.726 sum -23.871 3.241 -20.647 31.727 Atomic orbital electron populations 1.22100 0.93062 1.03154 1.02937 1.21025 0.95351 0.96909 0.82692 0.90334 1.22064 0.91770 1.03654 0.98621 1.21372 0.95597 0.96554 0.86927 1.45689 1.06019 1.57198 1.27489 1.20140 0.83016 0.79306 0.85943 1.90699 1.56768 1.46797 1.50589 1.23367 1.00842 1.04437 0.99274 1.85638 0.99931 1.73325 1.34147 1.23210 0.96236 1.40016 1.09790 0.89743 1.26167 0.94696 0.96568 1.01930 1.70195 0.99920 1.44204 1.40562 0.84927 0.78208 0.77973 0.76699 1.19321 1.20353 1.18051 1.45957 1.65900 1.14773 1.09074 1.16866 0.76589 0.85236 0.82164 1.90784 1.52630 1.15749 1.85258 1.21642 1.16647 0.91841 0.97037 1.23899 0.94292 0.97817 0.89107 1.50745 1.42542 1.07364 1.12950 1.22732 1.04819 1.07335 0.71628 1.81944 1.23128 1.06270 0.96444 1.74590 1.08974 1.13859 1.12607 0.91121 0.89462 0.93486 0.86743 0.88244 0.93230 0.93093 0.74288 0.86957 0.87039 0.92030 0.75160 0.74541 0.87064 0.85249 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.48 71.98 0.68 -1.12 16 2 C 0.14 2.18 2.57 44.99 0.12 2.29 16 3 H 0.08 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.12 -1.49 4.87 30.59 0.15 -1.34 16 5 C 0.12 2.66 5.56 86.38 0.48 3.14 16 6 N -0.71 -17.41 5.56 -463.05 -2.57 -19.98 16 7 C 0.53 19.94 7.85 87.66 0.69 20.63 16 8 O -0.57 -27.54 15.86 -3.03 -0.05 -27.59 16 9 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 10 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 11 C -0.54 -31.38 9.50 67.95 0.65 -30.73 16 12 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 13 C 0.01 0.63 5.49 84.86 0.47 1.09 16 14 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 15 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 19 N -0.71 -12.97 4.53 -445.71 -2.02 -14.99 16 20 C 0.61 13.56 7.78 86.69 0.67 14.23 16 21 O -0.57 -14.91 16.53 -4.00 -0.07 -14.98 16 22 C -0.13 -2.75 6.99 40.82 0.29 -2.46 16 23 C 0.11 1.49 11.31 83.85 0.95 2.44 16 24 N -0.35 -4.61 4.03 -368.61 -1.49 -6.09 16 25 C 0.07 0.13 11.51 127.77 1.47 1.60 16 26 N -0.10 -2.13 13.78 37.02 0.51 -1.62 16 27 N -0.23 -5.44 12.04 -49.99 -0.60 -6.04 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.42 6.78 8.47 -92.71 -0.79 5.99 16 36 H 0.11 3.96 8.14 -2.40 -0.02 3.95 16 37 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 39 H 0.41 7.09 8.29 -92.71 -0.77 6.32 16 40 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -91.59 391.90 1.41 -90.17 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.50 Total: 16.63 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.05 Total: 5.12 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -5.88 Total: -105.22 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.11 Total: -42.57 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -91.59 1.41 -90.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.131 kcal (2) G-P(sol) polarization free energy of solvation -91.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds