Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 N 1.46505 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.34782 * 119.99770 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00121 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99763 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.47088 * 179.97438 * 9 7 6 11 11 C 1.76204 * 100.00026 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99881 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00131 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47236 * 59.99617 * 15 13 11 17 17 H 1.48504 * 109.47358 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47204 * 299.99984 * 15 13 11 19 19 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 20 20 C 1.34770 * 119.99955 * 84.99585 * 19 2 1 21 21 O 1.21556 * 120.00162 * 0.02562 * 20 19 2 22 22 C 1.47873 * 119.99966 * 180.02562 * 20 19 2 23 23 N 1.34546 * 126.04853 * 0.02562 * 22 20 19 24 24 C 1.30876 * 107.26978 * 180.02562 * 23 22 20 25 25 N 1.34581 * 107.62199 * 359.97438 * 24 23 22 26 26 C 1.46509 * 125.74589 * 180.02562 * 25 24 23 27 27 N 1.28848 * 108.50834 * 359.73191 * 25 24 23 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 33 33 H 1.08998 * 109.47867 * 299.99927 * 5 4 2 34 34 H 1.08993 * 109.47122 * 60.00537 * 5 4 2 35 35 H 0.96994 * 120.00434 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.47513 * 300.00342 * 9 7 6 37 37 H 1.09001 * 109.47077 * 60.00195 * 9 7 6 38 38 H 0.97005 * 119.99888 * 180.02562 * 14 13 11 39 39 H 0.96997 * 120.00110 * 265.00363 * 19 2 1 40 40 H 1.07997 * 126.18469 * 180.02562 * 24 23 22 41 41 H 1.08991 * 109.47108 * 89.99846 * 26 25 24 42 42 H 1.08996 * 109.46702 * 210.00358 * 26 25 24 43 43 H 1.09010 * 109.46644 * 330.00056 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5101 7 6 5.3741 -1.3387 2.7757 8 8 6.1583 -0.7988 2.0246 9 6 5.8763 -2.0481 4.0068 10 16 7.6802 -1.9206 4.0829 11 6 7.9872 -2.8092 5.5731 12 1 7.1635 -3.2320 6.1292 13 6 9.2876 -2.9659 6.0324 14 7 10.2915 -2.4510 5.3544 15 14 9.6131 -3.9086 7.6118 16 1 9.1126 -5.2995 7.4702 17 1 11.0731 -3.9325 7.8822 18 1 8.9123 -3.2428 8.7391 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8583 1.1612 -2.4116 22 6 2.6393 -0.7155 -3.5646 23 7 2.9917 -2.0117 -3.6422 24 6 3.3704 -2.2383 -4.8743 25 7 3.2513 -1.0841 -5.5560 26 6 3.5695 -0.8902 -6.9729 27 7 2.8045 -0.1798 -4.7543 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4369 1.3572 35 1 3.4259 -1.7349 3.1111 36 1 5.4415 -1.5881 4.8941 37 1 5.5882 -3.0984 3.9639 38 1 11.2004 -2.5608 5.6752 39 1 2.2490 -1.6317 -1.1527 40 1 3.7152 -3.1813 -5.2721 41 1 2.6832 -1.0898 -7.5749 42 1 3.8950 0.1374 -7.1348 43 1 4.3674 -1.5741 -7.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 13.889613 kcal Electronic energy + Delta-G solvation = -25831.154183 eV Core-core repulsion = 21846.747745 eV Total energy + Delta-G solvation = -3984.406438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.80776 -39.99838 -39.06951 -36.78648 -35.03026 -34.38384 -32.41012 -32.13539 -31.91190 -30.07891 -28.24411 -28.08005 -25.47515 -24.73995 -23.38972 -22.68253 -21.36498 -20.78082 -20.24919 -18.56598 -17.80532 -17.18361 -16.83800 -16.76046 -16.15712 -15.94836 -15.54904 -15.22887 -14.96356 -14.78747 -14.33983 -14.04743 -13.95810 -13.78195 -13.73710 -13.60659 -13.15335 -12.84375 -12.55642 -12.35337 -12.30234 -12.13039 -11.60135 -11.49110 -11.22265 -11.02694 -11.02385 -10.86649 -10.81009 -10.75114 -10.47633 -9.96165 -9.80657 -9.44318 -9.31953 -9.04548 -8.83896 -8.21293 -6.47771 -6.19606 -3.90135 1.04798 1.72090 1.76338 2.72923 3.05555 3.10668 3.14693 3.24719 3.28718 3.32489 3.71602 3.74077 3.93663 4.22360 4.30789 4.44671 4.50929 4.57721 4.64840 4.76112 4.80367 5.10124 5.13680 5.15285 5.26335 5.36616 5.41560 5.55716 5.63884 5.67054 5.79636 5.89086 5.91110 5.93121 5.99517 6.04768 6.16437 6.19035 6.64639 7.12048 7.60965 7.62162 7.74655 7.91606 8.36848 8.66075 9.25367 10.87738 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.001896 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.779722 B =14761.909492 C =16141.627651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.119 3.881 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.705 5.705 20 C 0.620 3.380 21 O -0.518 6.518 22 C 0.141 3.859 23 N -0.484 5.484 24 C 0.194 3.806 25 N -0.305 5.305 26 C 0.085 3.915 27 N -0.252 5.252 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.411 0.589 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -0.787 -21.546 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.177 4.177 5 C -0.005 4.005 6 N -0.394 5.394 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 N -0.358 5.358 20 C 0.402 3.598 21 O -0.390 6.390 22 C -0.139 4.139 23 N -0.209 5.209 24 C -0.102 4.102 25 N -0.100 5.100 26 C -0.056 4.056 27 N -0.091 5.091 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.244 0.756 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.235 1.473 -22.723 30.462 hybrid contribution -0.674 -2.232 1.771 2.928 sum -20.909 -0.759 -20.952 29.610 Atomic orbital electron populations 1.22179 0.94515 1.02475 1.02957 1.20979 0.94338 0.97819 0.82613 0.88557 1.22124 0.95503 1.02097 0.97995 1.21277 0.92612 0.98060 0.88543 1.45984 1.07806 1.58617 1.27024 1.20313 0.81511 0.79743 0.86807 1.90711 1.54958 1.44314 1.49098 1.23528 1.06801 1.02557 0.97482 1.85417 0.92254 1.72718 1.33031 1.22831 0.95450 1.40202 1.09915 0.90972 1.24997 0.95056 0.95671 0.97905 1.70015 0.99387 1.42590 1.38312 0.86220 0.77343 0.79931 0.81975 1.19947 1.20831 1.19951 1.45781 1.66641 1.14759 1.08624 1.16227 0.77492 0.85223 0.80899 1.90837 1.49392 1.14571 1.84185 1.23718 1.06987 0.89383 0.93827 1.71271 1.17224 1.14395 1.18009 1.26524 1.01763 0.93811 0.88088 1.47406 1.43945 1.07093 1.11591 1.22285 1.03234 1.06111 0.73959 1.74343 1.15458 1.17887 1.01442 0.91128 0.91829 0.92168 0.89168 0.90314 0.91483 0.91496 0.76852 0.89228 0.89236 0.92148 0.75267 0.75583 0.89062 0.88058 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.15 1.26 2.57 -67.93 -0.17 1.09 16 3 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.14 -1.03 4.87 -26.73 -0.13 -1.16 16 5 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 6 N -0.74 -9.75 5.56 -60.29 -0.33 -10.08 16 7 C 0.53 10.07 7.85 -10.98 -0.09 9.98 16 8 O -0.52 -12.13 15.86 5.56 0.09 -12.04 16 9 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.70 -6.98 4.53 -54.74 -0.25 -7.23 16 20 C 0.62 8.02 7.80 -12.32 -0.10 7.92 16 21 O -0.52 -8.18 16.75 5.32 0.09 -8.09 16 22 C 0.14 1.75 7.96 -156.35 -1.24 0.51 16 23 N -0.48 -5.07 11.09 -12.36 -0.14 -5.20 16 24 C 0.19 1.32 12.62 -90.48 -1.14 0.18 16 25 N -0.30 -2.24 3.72 -69.39 -0.26 -2.50 16 26 C 0.08 0.16 11.38 59.85 0.68 0.84 16 27 N -0.25 -2.99 12.08 32.08 0.39 -2.60 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.41 3.64 8.31 -40.82 -0.34 3.30 16 40 H 0.23 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 -0.11 8.14 -51.92 -0.42 -0.54 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -41.40 391.33 -8.56 -49.96 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.10 Total: 0.98 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.44 Total: 3.96 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.14 Total: -53.25 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.40 -8.56 -49.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.851 kcal (2) G-P(sol) polarization free energy of solvation -41.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds