Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 N 1.46505 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.34782 * 119.99770 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00121 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99763 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.47088 * 179.97438 * 9 7 6 11 11 C 1.76204 * 100.00026 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99881 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00131 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47236 * 59.99617 * 15 13 11 17 17 H 1.48504 * 109.47358 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47204 * 299.99984 * 15 13 11 19 19 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 20 20 C 1.34770 * 119.99955 * 84.99585 * 19 2 1 21 21 O 1.21556 * 120.00162 * 0.02562 * 20 19 2 22 22 C 1.47873 * 119.99966 * 180.02562 * 20 19 2 23 23 N 1.34546 * 126.04853 * 0.02562 * 22 20 19 24 24 C 1.30876 * 107.26978 * 180.02562 * 23 22 20 25 25 N 1.34581 * 107.62199 * 359.97438 * 24 23 22 26 26 C 1.46509 * 125.74589 * 180.02562 * 25 24 23 27 27 N 1.28848 * 108.50834 * 359.73191 * 25 24 23 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 33 33 H 1.08998 * 109.47867 * 299.99927 * 5 4 2 34 34 H 1.08993 * 109.47122 * 60.00537 * 5 4 2 35 35 H 0.96994 * 120.00434 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.47513 * 300.00342 * 9 7 6 37 37 H 1.09001 * 109.47077 * 60.00195 * 9 7 6 38 38 H 0.97005 * 119.99888 * 180.02562 * 14 13 11 39 39 H 0.96997 * 120.00110 * 265.00363 * 19 2 1 40 40 H 1.07997 * 126.18469 * 180.02562 * 24 23 22 41 41 H 1.08991 * 109.47108 * 89.99846 * 26 25 24 42 42 H 1.08996 * 109.46702 * 210.00358 * 26 25 24 43 43 H 1.09010 * 109.46644 * 330.00056 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5101 7 6 5.3741 -1.3387 2.7757 8 8 6.1583 -0.7988 2.0246 9 6 5.8763 -2.0481 4.0068 10 16 7.6802 -1.9206 4.0829 11 6 7.9872 -2.8092 5.5731 12 1 7.1635 -3.2320 6.1292 13 6 9.2876 -2.9659 6.0324 14 7 10.2915 -2.4510 5.3544 15 14 9.6131 -3.9086 7.6118 16 1 9.1126 -5.2995 7.4702 17 1 11.0731 -3.9325 7.8822 18 1 8.9123 -3.2428 8.7391 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8583 1.1612 -2.4116 22 6 2.6393 -0.7155 -3.5646 23 7 2.9917 -2.0117 -3.6422 24 6 3.3704 -2.2383 -4.8743 25 7 3.2513 -1.0841 -5.5560 26 6 3.5695 -0.8902 -6.9729 27 7 2.8045 -0.1798 -4.7543 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4369 1.3572 35 1 3.4259 -1.7349 3.1111 36 1 5.4415 -1.5881 4.8941 37 1 5.5882 -3.0984 3.9639 38 1 11.2004 -2.5608 5.6752 39 1 2.2490 -1.6317 -1.1527 40 1 3.7152 -3.1813 -5.2721 41 1 2.6832 -1.0898 -7.5749 42 1 3.8950 0.1374 -7.1348 43 1 4.3674 -1.5741 -7.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = -18.399214 kcal Electronic energy + Delta-G solvation = -25832.554331 eV Core-core repulsion = 21846.747745 eV Total energy + Delta-G solvation = -3985.806586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.46059 -40.95261 -40.47912 -37.73831 -35.71297 -35.48996 -34.57151 -32.85989 -32.79463 -31.34724 -29.22596 -28.66217 -27.63989 -25.47580 -24.28083 -23.30139 -22.18171 -21.69492 -21.51360 -19.84702 -19.23728 -17.84350 -17.78831 -17.61517 -17.31144 -17.19154 -16.86577 -16.67162 -16.13334 -15.86973 -15.72280 -15.20860 -15.03904 -14.79599 -14.46659 -14.42664 -14.03344 -13.98685 -13.58514 -13.54045 -13.15813 -13.01704 -12.88357 -12.85379 -12.65575 -12.43993 -12.40256 -11.95129 -11.72935 -11.59143 -11.46682 -11.44250 -11.11632 -10.96181 -10.64669 -10.26366 -10.23503 -10.07892 -8.66081 -8.33212 -6.11752 0.26931 1.08560 1.27890 1.28455 1.45235 1.48166 1.57924 1.62851 2.03594 2.22107 2.26721 2.30674 3.00714 3.07931 3.33267 3.46351 3.73542 3.80134 3.89028 4.04682 4.09512 4.32597 4.32822 4.38711 4.42410 4.46085 4.53127 4.63245 4.67457 4.79693 4.83306 4.89589 5.01280 5.12198 5.28258 5.32103 5.41648 5.42759 5.44422 5.62157 6.20927 6.29397 6.54537 6.89908 7.07552 7.07701 7.27941 8.75786 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.001896 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.779722 B =14761.909492 C =16141.627651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.075 0.925 4 C -0.121 4.121 5 C 0.119 3.881 6 N -0.708 5.708 7 C 0.530 3.470 8 O -0.571 6.571 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.262 1.262 19 N -0.692 5.692 20 C 0.613 3.387 21 O -0.560 6.560 22 C 0.112 3.888 23 N -0.509 5.509 24 C 0.205 3.795 25 N -0.300 5.300 26 C 0.073 3.927 27 N -0.287 5.287 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.417 0.583 40 H 0.279 0.721 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 -3.313 -20.827 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.069 5.931 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.186 1.186 19 N -0.345 5.345 20 C 0.395 3.605 21 O -0.436 6.436 22 C -0.167 4.167 23 N -0.235 5.235 24 C -0.090 4.090 25 N -0.095 5.095 26 C -0.065 4.065 27 N -0.129 5.129 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.258 0.742 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.294 0.706 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.245 -1.093 -22.000 31.306 hybrid contribution -0.143 -1.455 1.377 2.008 sum -22.388 -2.548 -20.624 30.546 Atomic orbital electron populations 1.22110 0.92873 1.03449 1.02859 1.21090 0.95521 0.96878 0.82552 0.90703 1.22050 0.91749 1.03849 0.98203 1.21364 0.95616 0.96503 0.87041 1.45669 1.06032 1.57203 1.27393 1.20151 0.83001 0.79292 0.85957 1.90702 1.56796 1.46774 1.50644 1.23365 1.00812 1.04500 0.99202 1.85645 0.99954 1.73440 1.34024 1.23178 0.96234 1.40082 1.09816 0.89711 1.26165 0.94693 0.96574 1.01912 1.70192 0.99919 1.44250 1.40527 0.84982 0.77314 0.78664 0.76898 1.18510 1.20520 1.18633 1.45796 1.65544 1.14894 1.08244 1.16518 0.77137 0.84926 0.81882 1.90792 1.51588 1.16259 1.85001 1.23665 1.08684 0.90416 0.93930 1.71214 1.18466 1.13536 1.20263 1.27486 0.99550 0.94972 0.86969 1.47809 1.42434 1.06536 1.12756 1.22771 1.05401 1.06968 0.71358 1.74252 1.16644 1.19946 1.02044 0.89152 0.94019 0.90581 0.86528 0.87708 0.93097 0.93377 0.74213 0.86994 0.86897 0.92040 0.74530 0.70608 0.87170 0.88668 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 71.98 0.68 -1.32 16 2 C 0.14 2.37 2.57 44.99 0.12 2.49 16 3 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.46 4.87 30.59 0.15 -1.32 16 5 C 0.12 2.66 5.56 86.38 0.48 3.14 16 6 N -0.71 -17.13 5.56 -463.06 -2.57 -19.70 16 7 C 0.53 19.76 7.85 87.66 0.69 20.45 16 8 O -0.57 -27.50 15.86 -3.02 -0.05 -27.55 16 9 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 10 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 11 C -0.55 -31.18 9.50 67.95 0.65 -30.54 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 13 C 0.01 0.64 5.49 84.86 0.47 1.10 16 14 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 15 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 19 N -0.69 -13.93 4.53 -445.38 -2.02 -15.94 16 20 C 0.61 16.87 7.80 86.80 0.68 17.55 16 21 O -0.56 -19.14 16.75 -3.89 -0.07 -19.20 16 22 C 0.11 2.91 7.96 137.13 1.09 4.00 16 23 N -0.51 -10.49 11.09 -193.03 -2.14 -12.63 16 24 C 0.20 2.43 12.62 180.30 2.27 4.70 16 25 N -0.30 -4.13 3.72 -373.44 -1.39 -5.52 16 26 C 0.07 0.15 11.38 127.77 1.45 1.60 16 27 N -0.29 -7.07 12.08 -52.43 -0.63 -7.70 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.34 7.75 -2.39 -0.02 1.33 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.42 6.55 8.47 -92.71 -0.79 5.77 16 36 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 37 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 39 H 0.42 7.23 8.31 -92.71 -0.77 6.46 16 40 H 0.28 -0.14 8.06 -2.91 -0.02 -0.17 16 41 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.14 -0.78 8.14 -2.38 -0.02 -0.80 16 Total: -1.00 -97.31 391.33 0.94 -96.36 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.50 Total: 15.29 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 9.16 Total: 17.28 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -8.47 Total: -117.74 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.11 Total: -46.75 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -97.31 0.94 -96.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.961 kcal (2) G-P(sol) polarization free energy of solvation -97.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds