Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99253 * 2 1 3 5 5 C 1.53000 * 109.47255 * 184.99972 * 4 2 1 6 6 N 1.46501 * 109.47189 * 180.02562 * 5 4 2 7 7 C 1.34769 * 119.99809 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00241 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99963 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47498 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00171 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99859 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31623 * 120.00199 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99630 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46886 * 89.99831 * 15 13 11 17 17 H 1.48494 * 109.46906 * 209.99936 * 15 13 11 18 18 H 1.48498 * 109.47246 * 329.99889 * 15 13 11 19 19 N 1.46498 * 109.47441 * 239.99647 * 2 1 3 20 20 C 1.34774 * 119.99911 * 84.99937 * 19 2 1 21 21 O 1.21623 * 119.99927 * 5.18628 * 20 19 2 22 22 C 1.47231 * 119.99859 * 185.18342 * 20 19 2 23 23 C 1.37003 * 127.19355 * 5.54814 * 22 20 19 24 24 N 1.33316 * 106.37447 * 180.24470 * 23 22 20 25 25 N 1.28507 * 109.43976 * 359.77426 * 24 23 22 26 26 N 1.28707 * 110.63872 * 0.02562 * 25 24 23 27 27 C 1.46506 * 126.03823 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46804 * 60.00373 * 1 2 3 29 29 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47442 * 300.00716 * 1 2 3 31 31 H 1.08993 * 109.47250 * 305.00589 * 4 2 1 32 32 H 1.09002 * 109.46365 * 65.00429 * 4 2 1 33 33 H 1.08993 * 109.47495 * 300.00466 * 5 4 2 34 34 H 1.09005 * 109.46562 * 60.00325 * 5 4 2 35 35 H 0.97001 * 119.99979 * 0.02562 * 6 5 4 36 36 H 1.09006 * 109.46978 * 300.00134 * 9 7 6 37 37 H 1.08999 * 109.47704 * 59.99562 * 9 7 6 38 38 H 0.97005 * 119.99925 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00149 * 265.00119 * 19 2 1 40 40 H 1.08002 * 126.80877 * 359.97438 * 23 22 20 41 41 H 1.08999 * 109.47256 * 85.83235 * 27 26 25 42 42 H 1.08993 * 109.47651 * 205.83396 * 27 26 25 43 43 H 1.09004 * 109.46633 * 325.83651 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3041 2.5098 7 6 5.3739 -1.3395 2.7754 8 8 6.1582 -0.7990 2.0247 9 6 5.8764 -2.0508 4.0053 10 16 7.6801 -1.9217 4.0825 11 6 7.9871 -2.8117 5.5719 12 1 7.1635 -3.2351 6.1275 13 6 9.2876 -2.9685 6.0311 14 7 10.2914 -2.4520 5.3542 15 14 9.6130 -3.9115 7.6105 16 1 9.8147 -5.3487 7.2963 17 1 10.8312 -3.3725 8.2667 18 1 8.4518 -3.7627 8.5241 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.9486 1.1811 -2.3904 22 6 2.5280 -0.7360 -3.5849 23 6 2.6829 -2.0884 -3.7395 24 7 3.0364 -2.2834 -5.0101 25 7 3.0968 -1.1516 -5.6157 26 7 2.8000 -0.1908 -4.8124 27 6 2.7641 1.2345 -5.1495 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 1.7516 -1.7714 1.2057 33 1 3.9994 -1.0727 0.4262 34 1 3.8531 0.4372 1.3574 35 1 3.4258 -1.7362 3.1104 36 1 5.4413 -1.5923 4.8934 37 1 5.5885 -3.1012 3.9608 38 1 11.2002 -2.5620 5.6749 39 1 2.2491 -1.6318 -1.1525 40 1 2.5498 -2.8459 -2.9812 41 1 1.7879 1.4853 -5.5644 42 1 2.9392 1.8250 -4.2503 43 1 3.5385 1.4535 -5.8846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = 18.474469 kcal Electronic energy + Delta-G solvation = -26078.432414 eV Core-core repulsion = 22094.224791 eV Total energy + Delta-G solvation = -3984.207623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.71494 -40.30066 -39.20413 -37.08395 -35.12821 -34.51971 -32.85245 -32.45021 -31.15469 -30.09902 -28.47001 -28.22517 -25.52153 -24.89415 -23.55614 -22.87330 -21.44482 -21.08548 -20.37034 -18.62640 -17.85727 -17.32386 -17.23185 -16.73735 -16.25659 -16.08181 -15.52279 -15.37650 -14.89161 -14.82362 -14.61135 -14.20877 -14.01043 -13.88622 -13.77091 -13.42799 -13.30339 -13.06269 -12.65515 -12.54134 -12.43894 -12.24853 -11.78427 -11.65160 -11.54351 -11.40558 -11.08261 -11.04644 -10.78205 -10.67977 -10.58991 -9.99737 -9.84276 -9.68774 -9.45119 -9.09460 -8.96688 -8.26338 -6.52789 -6.23736 -3.94674 0.47299 1.63119 1.88311 2.56324 2.58437 2.97073 3.04438 3.20784 3.25897 3.29563 3.62735 3.81776 3.99267 4.18237 4.29574 4.32305 4.38603 4.51205 4.59773 4.60561 4.92218 4.95108 4.95690 5.11464 5.14484 5.15252 5.19855 5.22010 5.44010 5.48327 5.57496 5.60250 5.70484 5.83344 5.84803 5.90331 5.92223 6.09715 6.52277 6.80138 7.48875 7.57241 7.62882 7.92020 8.32942 8.55434 9.21526 10.83658 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.001889 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.406926 B =14817.215822 C =15774.484858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.707 5.707 20 C 0.601 3.399 21 O -0.533 6.533 22 C -0.074 4.074 23 C 0.005 3.995 24 N -0.272 5.272 25 N -0.057 5.057 26 N -0.253 5.253 27 C 0.074 3.926 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.406 0.594 40 H 0.199 0.801 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.250 4.564 -14.621 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.117 0.883 4 C -0.179 4.179 5 C -0.005 4.005 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.359 5.359 20 C 0.386 3.614 21 O -0.410 6.410 22 C -0.209 4.209 23 C -0.156 4.156 24 N -0.134 5.134 25 N -0.038 5.038 26 N -0.050 5.050 27 C -0.066 4.066 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.241 0.759 40 H 0.216 0.784 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.478 6.056 -17.367 29.044 hybrid contribution -1.176 -1.557 3.203 3.750 sum -23.654 4.500 -14.164 27.935 Atomic orbital electron populations 1.22185 0.94325 1.02624 1.03035 1.21008 0.94326 0.97972 0.82388 0.88317 1.22143 0.95581 1.02115 0.98023 1.21264 0.92478 0.98127 0.88602 1.45987 1.07866 1.58630 1.27066 1.20332 0.81454 0.79716 0.86815 1.90715 1.54952 1.44268 1.49072 1.23529 1.06917 1.02534 0.97424 1.85427 0.92138 1.72641 1.33233 1.22859 0.95473 1.40169 1.09906 0.90912 1.25002 0.95059 0.95638 0.97925 1.70015 0.99399 1.42449 1.38378 0.86161 0.77973 0.79628 0.81699 1.20253 1.20749 1.19697 1.45770 1.66867 1.14445 1.08866 1.16630 0.76957 0.86060 0.81801 1.90811 1.50904 1.13636 1.85617 1.21914 1.14840 0.94307 0.89793 1.23922 1.02027 0.93638 0.96005 1.74932 1.16622 1.16104 1.05722 1.78316 1.16639 0.90631 1.18260 1.47676 1.41076 1.10179 1.06052 1.22606 1.05373 0.73148 1.05497 0.91935 0.92029 0.90967 0.89024 0.90244 0.91655 0.91469 0.76792 0.89212 0.89205 0.92155 0.75879 0.78445 0.88533 0.86395 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 9.48 37.15 0.35 -0.40 16 2 C 0.15 0.82 2.62 -67.93 -0.18 0.65 16 3 H 0.10 0.73 7.51 -51.93 -0.39 0.34 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 1.14 5.56 -4.04 -0.02 1.12 16 6 N -0.74 -8.57 5.56 -60.30 -0.33 -8.90 16 7 C 0.53 9.40 7.85 -10.99 -0.09 9.31 16 8 O -0.52 -11.45 15.86 5.56 0.09 -11.36 16 9 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 15 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 N -0.71 -4.16 4.51 -54.94 -0.25 -4.41 16 20 C 0.60 5.07 7.76 -12.61 -0.10 4.98 16 21 O -0.53 -5.70 14.46 5.26 0.08 -5.63 16 22 C -0.07 -0.65 6.98 -82.33 -0.57 -1.23 16 23 C 0.01 0.04 11.54 -17.36 -0.20 -0.16 16 24 N -0.27 -3.11 12.35 30.47 0.38 -2.73 16 25 N -0.06 -0.65 13.14 60.35 0.79 0.15 16 26 N -0.25 -2.35 3.79 -64.12 -0.24 -2.59 16 27 C 0.07 0.43 10.99 59.85 0.66 1.09 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.69 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 36 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.41 1.56 7.68 -40.82 -0.31 1.25 16 40 H 0.20 0.85 7.60 -52.49 -0.40 0.45 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.75 6.33 -51.93 -0.33 0.42 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -38.76 386.02 -5.99 -44.74 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.95 Total: -1.08 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.14 Total: -1.03 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 1.08 Total: -43.77 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -16.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.76 -5.99 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.218 kcal (2) G-P(sol) polarization free energy of solvation -38.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds