Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00013 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99711 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.46704 * 179.97438 * 9 7 6 11 11 C 1.76210 * 99.99828 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99512 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99860 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46954 * 89.99770 * 15 13 11 17 17 H 1.48494 * 109.47026 * 209.99820 * 15 13 11 18 18 H 1.48501 * 109.47073 * 329.99857 * 15 13 11 19 19 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 20 20 C 1.34769 * 119.99686 * 84.99974 * 19 2 1 21 21 O 1.21555 * 120.00387 * 359.97438 * 20 19 2 22 22 C 1.47811 * 119.99827 * 180.02562 * 20 19 2 23 23 C 1.40914 * 127.23875 * 179.97438 * 22 20 19 24 24 N 1.31129 * 105.78171 * 180.02562 * 23 22 20 25 25 N 1.28530 * 109.05321 * 359.97438 * 24 23 22 26 26 C 1.46501 * 124.43999 * 179.97438 * 25 24 23 27 27 N 1.28586 * 111.11306 * 359.72568 * 25 24 23 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 36 36 H 1.08993 * 109.47443 * 299.99991 * 9 7 6 37 37 H 1.09004 * 109.46924 * 60.00453 * 9 7 6 38 38 H 0.97002 * 120.00030 * 180.02562 * 14 13 11 39 39 H 0.97000 * 119.99634 * 265.00306 * 19 2 1 40 40 H 1.08005 * 127.11291 * 0.02562 * 23 22 20 41 41 H 1.08998 * 109.47207 * 90.02695 * 26 25 24 42 42 H 1.09006 * 109.46843 * 210.02678 * 26 25 24 43 43 H 1.08996 * 109.47073 * 330.02248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3398 2.7754 8 8 6.1583 -0.8000 2.0242 9 6 5.8762 -2.0503 4.0059 10 16 7.6801 -1.9227 4.0820 11 6 7.9871 -2.8127 5.5715 12 1 7.1634 -3.2353 6.1275 13 6 9.2875 -2.9697 6.0306 14 7 10.2915 -2.4542 5.3532 15 14 9.6131 -3.9138 7.6093 16 1 9.8151 -5.3508 7.2939 17 1 10.8312 -3.3751 8.2659 18 1 8.4518 -3.7660 8.5229 19 7 2.0184 -0.6906 -1.1962 20 6 2.1472 -0.0183 -2.3570 21 8 1.8576 1.1610 -2.4118 22 6 2.6394 -0.7152 -3.5640 23 6 2.8309 -0.1657 -4.8474 24 7 3.2763 -1.1481 -5.5931 25 7 3.3644 -2.2118 -4.8770 26 6 3.8262 -3.5099 -5.3749 27 7 2.9988 -1.9859 -3.6651 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.4258 -1.7358 3.1107 36 1 5.4413 -1.5911 4.8935 37 1 5.5882 -3.1006 3.9619 38 1 11.2003 -2.5642 5.6739 39 1 2.2491 -1.6318 -1.1525 40 1 2.6486 0.8538 -5.1537 41 1 4.9063 -3.5842 -5.2485 42 1 3.3391 -4.3081 -4.8148 43 1 3.5768 -3.6033 -6.4319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 29.104887 kcal Electronic energy + Delta-G solvation = -25913.258415 eV Core-core repulsion = 21929.511761 eV Total energy + Delta-G solvation = -3983.746654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.02650 -40.07921 -39.12249 -36.85582 -34.47631 -34.22723 -33.21179 -32.43531 -31.72001 -30.09707 -28.41338 -28.13090 -25.50322 -24.87043 -23.36493 -22.49537 -21.56556 -20.76858 -20.30465 -18.24688 -17.81918 -17.39213 -17.34768 -16.64845 -16.20224 -15.97743 -15.37403 -15.20533 -15.06151 -14.81088 -14.50161 -14.11500 -13.97732 -13.77156 -13.54077 -13.41050 -13.20019 -12.90665 -12.59866 -12.44840 -12.25648 -12.15991 -11.65513 -11.53843 -11.42211 -11.27287 -11.07100 -11.03107 -10.83809 -10.76709 -10.50750 -9.85287 -9.82328 -9.49601 -9.36896 -9.07783 -8.89057 -8.23973 -6.50707 -6.22253 -3.92936 0.93047 1.58537 1.75005 2.72732 2.94313 3.01894 3.10061 3.21568 3.27132 3.31159 3.52499 3.68441 4.19732 4.32687 4.46636 4.52180 4.53320 4.57211 4.72502 4.76596 4.80135 5.05729 5.08606 5.12827 5.22114 5.28125 5.31098 5.36959 5.55587 5.60819 5.63081 5.74422 5.85101 5.89063 5.93844 6.09153 6.12865 6.13205 6.59668 7.08713 7.58779 7.69655 7.69773 7.83549 8.34520 8.61383 9.22936 10.85161 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.001967 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.339346 B =14233.650927 C =15603.841542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.097 0.903 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.710 5.710 20 C 0.614 3.386 21 O -0.525 6.525 22 C -0.049 4.049 23 C 0.037 3.963 24 N -0.291 5.291 25 N -0.141 5.141 26 C 0.102 3.898 27 N -0.248 5.248 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.408 0.592 40 H 0.209 0.791 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.336 -1.163 -17.959 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.362 5.362 20 C 0.397 3.603 21 O -0.399 6.399 22 C -0.212 4.212 23 C -0.147 4.147 24 N -0.130 5.130 25 N -0.044 5.044 26 C -0.037 4.037 27 N -0.097 5.097 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.226 0.774 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.591 -0.576 -19.723 28.519 hybrid contribution -1.065 -1.211 2.426 2.913 sum -21.656 -1.787 -17.297 27.773 Atomic orbital electron populations 1.22173 0.94522 1.02406 1.02990 1.20976 0.94331 0.97854 0.82747 0.88499 1.22132 0.95494 1.02027 0.98125 1.21271 0.92598 0.98071 0.88502 1.45991 1.07820 1.58600 1.27068 1.20323 0.81497 0.79742 0.86811 1.90712 1.54953 1.44316 1.49078 1.23527 1.06840 1.02523 0.97477 1.85426 0.92205 1.72670 1.33166 1.22865 0.95463 1.40109 1.09907 0.90923 1.25000 0.95061 0.95658 0.97921 1.70021 0.99375 1.42530 1.38359 0.86162 0.77976 0.79606 0.81720 1.20281 1.20748 1.19692 1.45943 1.66649 1.14538 1.09118 1.16578 0.77117 0.85478 0.81102 1.90825 1.50212 1.14560 1.84301 1.23044 1.09786 0.90858 0.97527 1.24864 1.00249 1.00263 0.89328 1.74051 1.19377 0.94183 1.25410 1.48062 1.43176 1.10271 1.02881 1.22309 1.02129 0.77351 1.01953 1.74362 1.13655 1.17720 1.03959 0.91162 0.91762 0.92278 0.89185 0.90437 0.91621 0.91449 0.76848 0.89209 0.89255 0.92179 0.75691 0.77444 0.88519 0.87467 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.15 1.12 2.57 -67.93 -0.17 0.94 16 3 H 0.10 0.90 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.41 5.56 -60.29 -0.33 -9.74 16 7 C 0.53 9.85 7.85 -10.98 -0.09 9.76 16 8 O -0.52 -11.90 15.86 5.56 0.09 -11.81 16 9 C -0.15 -3.06 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 15 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.71 -6.16 4.53 -54.76 -0.25 -6.41 16 20 C 0.61 6.74 7.79 -12.35 -0.10 6.64 16 21 O -0.53 -7.02 16.61 5.32 0.09 -6.93 16 22 C -0.05 -0.53 7.21 -82.68 -0.60 -1.12 16 23 C 0.04 0.36 12.04 -16.84 -0.20 0.16 16 24 N -0.29 -2.86 12.01 30.89 0.37 -2.49 16 25 N -0.14 -1.23 4.35 -16.63 -0.07 -1.30 16 26 C 0.10 0.38 11.55 59.85 0.69 1.07 16 27 N -0.25 -2.48 11.84 33.42 0.40 -2.08 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.41 3.12 8.37 -40.82 -0.34 2.77 16 40 H 0.21 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -38.84 391.41 -6.26 -45.10 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.10 Total: 1.59 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.16 Total: 1.21 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.85 Total: -47.50 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.84 -6.26 -45.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.209 kcal (2) G-P(sol) polarization free energy of solvation -38.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds