Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00522 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99731 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00242 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47057 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00029 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00089 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46985 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47636 * 119.99671 * 15 13 11 18 18 H 1.48503 * 109.47026 * 240.00001 * 15 13 11 19 19 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 20 20 C 1.34777 * 120.00033 * 84.99600 * 19 2 1 21 21 O 1.21287 * 119.99681 * 0.02562 * 20 19 2 22 22 C 1.50696 * 120.00198 * 180.02562 * 20 19 2 23 23 N 1.46496 * 109.47214 * 179.97438 * 22 20 19 24 24 N 1.28599 * 124.61929 * 269.70160 * 23 22 20 25 25 C 1.31383 * 108.71692 * 179.83305 * 24 23 22 26 26 C 1.39677 * 105.89906 * 0.41387 * 25 24 23 27 27 N 1.28600 * 124.61949 * 90.00640 * 23 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 34 34 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 35 35 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46835 * 299.99911 * 9 7 6 37 37 H 1.08994 * 109.47068 * 59.99868 * 9 7 6 38 38 H 0.96999 * 119.99657 * 179.97438 * 14 13 11 39 39 H 0.96992 * 120.00062 * 265.00053 * 19 2 1 40 40 H 1.08997 * 109.47364 * 300.00354 * 22 20 19 41 41 H 1.09001 * 109.46822 * 60.00123 * 22 20 19 42 42 H 1.07998 * 127.05338 * 180.15902 * 25 24 23 43 43 H 1.08008 * 127.05133 * 179.77122 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3740 -1.3387 2.7758 8 8 6.1583 -0.7987 2.0246 9 6 5.8764 -2.0491 4.0062 10 16 7.6801 -1.9200 4.0833 11 6 7.9871 -2.8089 5.5734 12 1 7.1635 -3.2319 6.1293 13 6 9.2874 -2.9645 6.0332 14 7 10.2912 -2.4485 5.3559 15 14 9.6130 -3.9075 7.6125 16 1 8.3255 -4.3836 8.1791 17 1 10.4874 -5.0721 7.3225 18 1 10.2847 -3.0159 8.5919 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3572 21 8 1.8589 1.1587 -2.4114 22 6 2.6488 -0.7286 -3.5878 23 7 2.6976 0.2127 -4.7093 24 7 1.7297 0.4224 -5.5297 25 6 2.1080 1.3252 -6.4060 26 6 3.4200 1.6625 -6.0659 27 7 3.7160 0.9377 -5.0109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4370 1.3573 35 1 3.4259 -1.7350 3.1110 36 1 5.4414 -1.5899 4.8939 37 1 5.5885 -3.0994 3.9623 38 1 11.1999 -2.5570 5.6775 39 1 2.2491 -1.6316 -1.1527 40 1 3.6479 -1.1211 -3.3988 41 1 1.9759 -1.5504 -3.8327 42 1 1.5255 1.7219 -7.2244 43 1 4.0599 2.3738 -6.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = 34.126426 kcal Electronic energy + Delta-G solvation = -25796.917822 eV Core-core repulsion = 21813.388918 eV Total energy + Delta-G solvation = -3983.528904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.81660 -40.38667 -39.21132 -37.04266 -34.55826 -34.16028 -32.67716 -32.45578 -32.14172 -30.22033 -28.55122 -28.20137 -25.52267 -23.86502 -23.16292 -22.76300 -21.45156 -20.99269 -20.36365 -18.30576 -17.94337 -17.81915 -16.73117 -16.34474 -16.21922 -15.93431 -15.88962 -15.41374 -15.04601 -14.82948 -14.78440 -14.21425 -14.11424 -14.02711 -13.86466 -13.42471 -13.15080 -12.73771 -12.62418 -12.46748 -12.24104 -11.91112 -11.74911 -11.62214 -11.36888 -11.09244 -11.06289 -11.04685 -10.78045 -10.67475 -10.58142 -9.83653 -9.67862 -9.60868 -9.44394 -9.10585 -8.96251 -8.26149 -6.53066 -6.24328 -3.95173 1.41674 1.80713 2.01598 2.24385 2.68977 2.97300 3.04546 3.19542 3.25786 3.30021 3.63444 3.82388 4.01804 4.17679 4.36178 4.38963 4.43168 4.50237 4.62579 4.77068 4.96480 4.98701 5.07852 5.10991 5.15777 5.21445 5.26001 5.48747 5.57610 5.63213 5.69951 5.75605 5.84519 5.85070 5.90040 5.96961 6.09460 6.29778 6.52770 6.88013 7.57148 7.61176 7.63211 8.04136 8.32719 8.55624 9.21114 10.83152 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.001742 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.426207 B =16073.464924 C =17282.013407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.094 0.906 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.741 5.741 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.719 5.719 20 C 0.505 3.495 21 O -0.517 6.517 22 C 0.121 3.879 23 N -0.146 5.146 24 N -0.284 5.284 25 C -0.024 4.024 26 C -0.023 4.023 27 N -0.278 5.278 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.404 0.596 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.198 0.802 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.991 1.896 -17.892 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.373 5.373 20 C 0.288 3.712 21 O -0.392 6.392 22 C -0.003 4.003 23 N -0.046 5.046 24 N -0.125 5.125 25 C -0.207 4.207 26 C -0.207 4.207 27 N -0.118 5.118 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.239 0.761 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.215 0.785 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -21.729 2.797 -18.133 28.439 hybrid contribution -0.851 -1.228 1.475 2.100 sum -22.581 1.569 -16.658 28.104 Atomic orbital electron populations 1.22167 0.94511 1.02428 1.02987 1.20942 0.94292 0.97805 0.82682 0.88764 1.22133 0.95536 1.01998 0.98102 1.21258 0.92494 0.98117 0.88522 1.45997 1.07864 1.58668 1.27036 1.20337 0.81458 0.79720 0.86834 1.90717 1.54945 1.44239 1.49071 1.23530 1.06928 1.02517 0.97435 1.85431 0.92113 1.72733 1.33143 1.22906 0.95505 1.40119 1.09869 0.90865 1.24999 0.95055 0.95646 0.97918 1.70028 0.99383 1.42588 1.38231 0.86110 0.78398 0.79269 0.81669 1.19627 1.20554 1.20551 1.45968 1.67680 1.14293 1.09346 1.20449 0.78407 0.87756 0.84592 1.90807 1.48483 1.15404 1.84465 1.21685 1.07115 0.89843 0.81675 1.47275 1.05691 1.30126 1.21480 1.74023 1.16961 1.18482 1.02999 1.24792 0.96163 0.98437 1.01352 1.24830 0.97148 1.02804 0.95891 1.74111 1.15095 1.06690 1.15906 0.91172 0.92151 0.91925 0.89203 0.90340 0.91651 0.91520 0.76816 0.89217 0.89226 0.92206 0.76079 0.84160 0.84429 0.78500 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.62 16 2 C 0.15 0.99 2.57 -67.93 -0.17 0.82 16 3 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 4 C -0.14 -0.80 4.87 -26.74 -0.13 -0.93 16 5 C 0.12 1.21 5.56 -4.04 -0.02 1.18 16 6 N -0.74 -8.80 5.56 -60.29 -0.33 -9.14 16 7 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 8 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 9 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.72 -4.38 4.53 -53.81 -0.24 -4.62 16 20 C 0.50 4.54 7.86 -10.99 -0.09 4.46 16 21 O -0.52 -7.17 16.09 5.55 0.09 -7.08 16 22 C 0.12 0.83 7.02 -5.20 -0.04 0.79 16 23 N -0.15 -1.55 3.44 -11.67 -0.04 -1.59 16 24 N -0.28 -3.07 12.05 30.67 0.37 -2.70 16 25 C -0.02 -0.21 12.20 -17.21 -0.21 -0.42 16 26 C -0.02 -0.21 12.20 -17.21 -0.21 -0.42 16 27 N -0.28 -3.26 12.05 30.68 0.37 -2.89 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.40 3.44 8.47 -40.82 -0.35 3.09 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.40 1.29 8.60 -40.82 -0.35 0.94 16 40 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.20 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -41.43 391.06 -6.61 -48.03 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.11 Total: -0.19 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.18 Total: -1.33 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.85 Total: -46.21 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -41.43 -6.61 -48.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.160 kcal (2) G-P(sol) polarization free energy of solvation -41.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds