Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47451 * 120.00172 * 2 1 3 5 5 C 1.52998 * 109.47500 * 184.99841 * 4 2 1 6 6 N 1.46493 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.34785 * 120.00210 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99658 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00131 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47026 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99793 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00477 * 0.02562 * 11 10 9 13 13 C 1.38805 * 120.00111 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99605 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00325 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46562 * 90.00395 * 15 13 11 17 17 H 1.48493 * 109.47205 * 210.00107 * 15 13 11 18 18 H 1.48498 * 109.47006 * 330.00811 * 15 13 11 19 19 N 1.46504 * 109.46966 * 240.00624 * 2 1 3 20 20 C 1.34772 * 120.00086 * 85.00271 * 19 2 1 21 21 O 1.21283 * 120.00122 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99767 * 180.02562 * 20 19 2 23 23 N 1.46506 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.34424 * 126.82028 * 125.00177 * 23 22 20 25 25 N 1.30835 * 108.07649 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.83029 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94316 * 359.75029 * 26 25 24 28 28 H 1.09000 * 109.47338 * 59.99638 * 1 2 3 29 29 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 299.99874 * 1 2 3 31 31 H 1.09001 * 109.47274 * 305.00520 * 4 2 1 32 32 H 1.09006 * 109.46976 * 65.00009 * 4 2 1 33 33 H 1.09001 * 109.47411 * 300.00595 * 5 4 2 34 34 H 1.09006 * 109.46869 * 60.00102 * 5 4 2 35 35 H 0.97001 * 119.99882 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47207 * 300.00031 * 9 7 6 37 37 H 1.09006 * 109.47275 * 59.99662 * 9 7 6 38 38 H 0.96998 * 119.99718 * 179.97438 * 14 13 11 39 39 H 0.96997 * 119.99399 * 264.99524 * 19 2 1 40 40 H 1.08999 * 109.47353 * 59.99471 * 22 20 19 41 41 H 1.09000 * 109.47019 * 299.99125 * 22 20 19 42 42 H 1.07997 * 125.96622 * 359.97438 * 24 23 22 43 43 H 1.07993 * 125.52851 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3045 2.5094 7 6 5.3742 -1.3399 2.7750 8 8 6.1584 -0.8001 2.0238 9 6 5.8765 -2.0504 4.0054 10 16 7.6804 -1.9228 4.0814 11 6 7.9874 -2.8116 5.5716 12 1 7.1637 -3.2344 6.1277 13 6 9.2879 -2.9692 6.0304 14 7 10.2918 -2.4542 5.3524 15 14 9.6133 -3.9107 7.6106 16 1 9.8137 -5.3485 7.2976 17 1 10.8323 -3.3722 8.2656 18 1 8.4526 -3.7602 8.5244 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3571 21 8 1.8582 1.1586 -2.4116 22 6 2.6488 -0.7286 -3.5878 23 7 2.6976 0.2129 -4.7093 24 6 3.7632 0.4945 -5.4789 25 7 3.3986 1.3824 -6.3679 26 6 2.1136 1.6910 -6.1979 27 7 1.6393 0.9966 -5.1972 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0727 0.4258 34 1 3.8532 0.4370 1.3573 35 1 3.4259 -1.7359 3.1104 36 1 5.4417 -1.5912 4.8931 37 1 5.5884 -3.1008 3.9615 38 1 11.2006 -2.5640 5.6732 39 1 2.2490 -1.6316 -1.1527 40 1 1.9759 -1.5503 -3.8327 41 1 3.6479 -1.1211 -3.3987 42 1 4.7484 0.0631 -5.3805 43 1 1.5536 2.3967 -6.7933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = 16.308142 kcal Electronic energy + Delta-G solvation = -25747.311766 eV Core-core repulsion = 21763.010203 eV Total energy + Delta-G solvation = -3984.301562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37810 -40.31532 -39.23491 -37.03109 -34.56774 -34.41766 -32.47205 -32.16585 -31.48088 -30.23173 -28.36120 -28.20453 -25.53749 -23.83987 -22.85112 -22.29759 -21.56856 -20.98282 -20.38933 -18.02412 -17.87146 -17.76159 -16.66942 -16.35367 -16.16605 -16.01268 -15.49326 -15.39556 -15.06807 -14.84375 -14.44884 -14.20673 -14.10813 -14.00197 -13.88417 -13.50768 -13.22247 -12.85089 -12.63267 -12.47844 -12.26211 -12.18327 -11.75658 -11.63690 -11.37564 -11.10128 -11.06757 -10.80054 -10.69690 -10.33153 -10.07692 -9.89719 -9.86376 -9.64349 -9.46957 -9.11554 -8.99124 -8.29060 -6.55214 -6.25964 -3.97025 1.27349 1.78438 2.07951 2.61371 2.71424 2.94977 3.01314 3.18937 3.24284 3.27992 3.61289 3.93139 4.02586 4.12013 4.16186 4.35925 4.40941 4.43979 4.54683 4.61866 4.90439 4.96905 4.98447 5.09326 5.13825 5.20374 5.27024 5.48531 5.55308 5.62447 5.76508 5.81997 5.82876 5.85994 5.99402 6.07231 6.11693 6.36862 6.49895 6.92747 7.55136 7.60244 7.67799 7.77081 8.30777 8.52291 9.19395 10.81449 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.001735 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.362993 B =16135.559197 C =17389.158079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.741 5.741 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.154 4.154 10 S -0.061 6.061 11 C -0.537 4.537 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.723 5.723 20 C 0.502 3.498 21 O -0.507 6.507 22 C 0.110 3.890 23 N -0.372 5.372 24 C 0.258 3.742 25 N -0.544 5.544 26 C 0.193 3.807 27 N -0.293 5.293 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.402 0.598 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.221 0.779 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.663 0.011 -16.117 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.377 5.377 20 C 0.286 3.714 21 O -0.381 6.381 22 C -0.017 4.017 23 N -0.163 5.163 24 C -0.039 4.039 25 N -0.271 5.271 26 C -0.110 4.110 27 N -0.120 5.120 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.237 0.763 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -20.899 1.971 -17.376 27.250 hybrid contribution -0.684 -2.095 2.398 3.257 sum -21.583 -0.123 -14.978 26.271 Atomic orbital electron populations 1.22163 0.94591 1.02345 1.02989 1.20906 0.94266 0.97719 0.82758 0.88868 1.22135 0.95476 1.01984 0.98195 1.21247 0.92542 0.98032 0.88478 1.46006 1.07863 1.58611 1.27092 1.20334 0.81448 0.79682 0.86821 1.90708 1.54965 1.44302 1.49102 1.23533 1.06947 1.02521 0.97443 1.85410 0.92064 1.72782 1.33139 1.22863 0.95479 1.40212 1.09924 0.90916 1.24999 0.95046 0.95623 0.97916 1.70015 0.99401 1.42465 1.38351 0.86161 0.77998 0.79600 0.81701 1.20261 1.20720 1.19699 1.46018 1.68004 1.14207 1.09496 1.20411 0.78764 0.87848 0.84407 1.90821 1.47761 1.15345 1.84131 1.21593 1.05991 0.90716 0.83366 1.49967 1.08376 1.32867 1.25087 1.26155 0.94759 0.94607 0.88350 1.70549 1.13656 1.16629 1.26243 1.26025 0.90543 0.99372 0.95022 1.78160 1.10483 1.09356 1.13959 0.91838 0.92264 0.91275 0.89273 0.90401 0.91720 0.91572 0.76798 0.89205 0.89223 0.92144 0.76291 0.86280 0.84837 0.76287 0.76732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.48 37.16 0.35 -0.61 16 2 C 0.15 0.95 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 4 C -0.14 -0.76 4.87 -26.73 -0.13 -0.89 16 5 C 0.12 1.15 5.56 -4.05 -0.02 1.13 16 6 N -0.74 -8.50 5.56 -60.30 -0.33 -8.83 16 7 C 0.53 9.25 7.85 -10.98 -0.09 9.17 16 8 O -0.52 -11.23 15.86 5.56 0.09 -11.15 16 9 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 11 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 12 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 15 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 N -0.72 -3.97 4.53 -53.81 -0.24 -4.21 16 20 C 0.50 4.05 7.83 -10.99 -0.09 3.96 16 21 O -0.51 -6.67 15.41 5.55 0.09 -6.59 16 22 C 0.11 0.54 7.03 -5.19 -0.04 0.50 16 23 N -0.37 -3.21 3.40 -63.81 -0.22 -3.43 16 24 C 0.26 2.04 12.63 -90.66 -1.14 0.90 16 25 N -0.54 -5.70 11.19 -15.84 -0.18 -5.88 16 26 C 0.19 1.95 13.03 -91.82 -1.20 0.75 16 27 N -0.29 -3.33 11.83 29.29 0.35 -2.99 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.31 8.47 -40.82 -0.35 2.97 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.40 1.07 8.60 -40.82 -0.35 0.72 16 40 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.13 0.18 8.09 -51.93 -0.42 -0.24 16 42 H 0.22 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -41.58 390.45 -9.28 -50.86 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.11 Total: -1.06 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.11 Total: 0.25 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.11 Total: -50.37 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -41.58 -9.28 -50.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.171 kcal (2) G-P(sol) polarization free energy of solvation -41.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds