Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47565 * 2 1 4 4 C 1.53001 * 109.47041 * 120.00327 * 2 1 3 5 5 C 1.52996 * 109.47439 * 184.99760 * 4 2 1 6 6 N 1.46496 * 109.47684 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00526 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.50691 * 120.00202 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47290 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00278 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00119 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00182 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00101 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47202 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47205 * 119.99760 * 15 13 11 18 18 H 1.48501 * 109.46998 * 239.99656 * 15 13 11 19 19 N 1.46502 * 109.47003 * 239.99744 * 2 1 3 20 20 C 1.34772 * 119.99840 * 85.00177 * 19 2 1 21 21 O 1.21280 * 120.00185 * 0.02562 * 20 19 2 22 22 C 1.50702 * 120.00188 * 180.02562 * 20 19 2 23 23 C 1.50696 * 109.47272 * 180.02562 * 22 20 19 24 24 N 1.33251 * 125.52599 * 90.00181 * 23 22 20 25 25 C 1.30825 * 109.82850 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.08133 * 359.97438 * 25 24 23 27 27 H 0.96991 * 126.82624 * 179.73840 * 26 25 24 28 28 N 1.30709 * 125.53091 * 269.99942 * 23 22 20 29 29 H 1.09001 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47089 * 300.00549 * 1 2 3 31 31 H 1.08999 * 109.47216 * 60.00015 * 1 2 3 32 32 H 1.09005 * 109.47138 * 304.99781 * 4 2 1 33 33 H 1.08999 * 109.47245 * 64.99789 * 4 2 1 34 34 H 1.09005 * 109.46973 * 300.00122 * 5 4 2 35 35 H 1.08999 * 109.47065 * 59.99041 * 5 4 2 36 36 H 0.97001 * 119.99499 * 359.97438 * 6 5 4 37 37 H 1.09005 * 109.47265 * 300.00218 * 9 7 6 38 38 H 1.08999 * 109.47727 * 59.99721 * 9 7 6 39 39 H 0.97000 * 120.00267 * 180.02562 * 14 13 11 40 40 H 0.96998 * 120.00079 * 265.00781 * 19 2 1 41 41 H 1.08999 * 109.46924 * 59.99927 * 22 20 19 42 42 H 1.09001 * 109.47302 * 300.00405 * 22 20 19 43 43 H 1.08002 * 125.96446 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.6135 1.3137 6 7 4.0531 -1.3036 2.5101 7 6 5.3740 -1.3398 2.7754 8 8 6.1584 -0.8006 2.0238 9 6 5.8762 -2.0502 4.0058 10 16 7.6801 -1.9225 4.0822 11 6 7.9870 -2.8112 5.5723 12 1 7.1632 -3.2334 6.1287 13 6 9.2873 -2.9677 6.0318 14 7 10.2913 -2.4527 5.3540 15 14 9.6127 -3.9093 7.6120 16 1 8.3250 -4.3834 8.1797 17 1 10.4857 -5.0751 7.3228 18 1 10.2858 -3.0173 8.5900 19 7 2.0183 -0.6907 -1.1962 20 6 2.1470 -0.0184 -2.3571 21 8 1.8591 1.1585 -2.4115 22 6 2.6488 -0.7289 -3.5877 23 6 2.7002 0.2396 -4.7411 24 7 3.7454 0.9983 -5.0691 25 6 3.4560 1.7221 -6.1198 26 7 2.1964 1.4340 -6.4909 27 1 1.7074 1.8182 -7.2352 28 7 1.7268 0.4717 -5.5821 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2618 2.1370 33 1 1.7516 -1.7716 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4256 -1.7345 3.1114 37 1 5.4419 -1.5905 4.8936 38 1 5.5875 -3.1004 3.9624 39 1 11.2001 -2.5624 5.6749 40 1 2.2489 -1.6318 -1.1526 41 1 1.9758 -1.5506 -3.8325 42 1 3.6479 -1.1216 -3.3987 43 1 4.1145 2.4274 -6.6050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = 1.786784 kcal Electronic energy + Delta-G solvation = -25651.446852 eV Core-core repulsion = 21666.515596 eV Total energy + Delta-G solvation = -3984.931256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44765 -40.12238 -39.11694 -36.85121 -34.42197 -33.70167 -32.42252 -32.26553 -31.74947 -30.16704 -29.02845 -28.11548 -25.48720 -23.73574 -23.17011 -22.19961 -21.07240 -20.41744 -20.18591 -18.70505 -17.86683 -17.53628 -16.69756 -16.18902 -16.06039 -15.81761 -15.51990 -15.38677 -14.92348 -14.79864 -14.42958 -13.99785 -13.91845 -13.78265 -13.60502 -13.25856 -13.00623 -12.58509 -12.50284 -12.37376 -12.31063 -12.15390 -11.62050 -11.51536 -11.24118 -11.06511 -11.01163 -10.74896 -10.56275 -10.38145 -10.23988 -9.90712 -9.79948 -9.46606 -9.34228 -9.07160 -8.87572 -8.21781 -6.48984 -6.20976 -3.91455 1.24875 2.26284 2.37864 2.42679 3.00357 3.03525 3.11711 3.22061 3.28688 3.33148 3.70140 3.72166 4.20980 4.23521 4.41175 4.52449 4.54568 4.65407 4.76252 4.96823 5.07865 5.10032 5.14199 5.14374 5.24184 5.32478 5.39113 5.61104 5.64317 5.76204 5.83179 5.86974 5.90591 5.95708 6.00952 6.14446 6.19461 6.61228 6.65435 7.16762 7.60483 7.71041 7.72362 7.93662 8.36076 8.63007 9.24410 10.86488 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.001725 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.866041 B =16231.613705 C =17472.656582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.741 5.741 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.725 5.725 20 C 0.525 3.475 21 O -0.529 6.529 22 C -0.051 4.051 23 C 0.249 3.751 24 N -0.532 5.532 25 C 0.264 3.736 26 N -0.484 5.484 27 H 0.441 0.559 28 N -0.306 5.306 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.403 0.597 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 3.590 -19.998 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.378 5.378 20 C 0.310 3.690 21 O -0.404 6.404 22 C -0.094 4.094 23 C -0.035 4.035 24 N -0.259 5.259 25 C -0.035 4.035 26 N -0.202 5.202 27 H 0.287 0.713 28 N -0.136 5.136 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.237 0.763 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.746 5.018 -21.066 30.689 hybrid contribution -1.038 -1.387 1.535 2.315 sum -22.783 3.631 -19.530 30.227 Atomic orbital electron populations 1.22162 0.94823 1.02266 1.02780 1.20884 0.94086 0.97803 0.83030 0.88906 1.22126 0.95489 1.01935 0.98186 1.21263 0.92562 0.98073 0.88475 1.46001 1.07811 1.58667 1.27059 1.20316 0.81500 0.79750 0.86821 1.90717 1.54939 1.44275 1.49029 1.23529 1.06861 1.02525 0.97485 1.85428 0.92183 1.72720 1.33073 1.22911 0.95485 1.40096 1.09860 0.90880 1.24995 0.95063 0.95660 0.97900 1.70028 0.99350 1.42629 1.38244 0.86115 0.78385 0.79261 0.81713 1.19634 1.20573 1.20578 1.46018 1.68052 1.14204 1.09521 1.20157 0.77449 0.87272 0.84131 1.90740 1.49078 1.15796 1.84803 1.19907 1.05784 0.95755 0.87932 1.23266 0.87275 0.96890 0.96034 1.70397 1.29922 1.11128 1.14480 1.26112 0.86224 0.98133 0.93005 1.48079 1.12699 1.32990 1.26471 0.71314 1.77940 1.21918 1.09084 1.04635 0.92292 0.91426 0.91973 0.89442 0.90466 0.91507 0.91548 0.76876 0.89254 0.89246 0.92233 0.76276 0.86372 0.85591 0.76005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.15 1.13 2.58 -67.93 -0.17 0.96 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.30 5.56 -4.05 -0.02 1.28 16 6 N -0.74 -9.26 5.56 -60.30 -0.33 -9.60 16 7 C 0.53 9.75 7.85 -10.99 -0.09 9.67 16 8 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 N -0.72 -5.36 4.53 -53.81 -0.24 -5.60 16 20 C 0.53 5.35 7.79 -10.99 -0.09 5.27 16 21 O -0.53 -7.70 15.70 5.56 0.09 -7.61 16 22 C -0.05 -0.42 6.33 -29.04 -0.18 -0.60 16 23 C 0.25 2.75 6.63 -156.85 -1.04 1.71 16 24 N -0.53 -6.01 11.19 -11.98 -0.13 -6.14 16 25 C 0.26 1.88 13.13 -90.65 -1.19 0.69 16 26 N -0.48 -3.34 7.45 29.53 0.22 -3.12 16 27 H 0.44 1.27 8.96 -182.34 -1.63 -0.36 16 28 N -0.31 -3.27 12.80 32.42 0.41 -2.85 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 1.92 8.60 -40.82 -0.35 1.57 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -42.36 390.06 -9.99 -52.35 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.32 Total: -0.03 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.14 Total: 1.40 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.66 Total: -52.77 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.18 Total: -19.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -42.36 -9.99 -52.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.139 kcal (2) G-P(sol) polarization free energy of solvation -42.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds