Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.46913 * 120.00079 * 2 1 3 5 5 C 1.53003 * 109.46776 * 185.00369 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46498 * 109.47281 * 240.00470 * 2 1 3 16 16 C 1.34769 * 120.00086 * 84.99711 * 15 2 1 17 17 O 1.21279 * 120.00564 * 359.97438 * 16 15 2 18 18 C 1.50703 * 120.00123 * 180.02562 * 16 15 2 19 19 S 1.80995 * 109.47407 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00181 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99960 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47774 * 59.99533 * 24 22 20 26 26 H 1.48502 * 109.47319 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46968 * 299.99390 * 24 22 20 28 28 H 1.08997 * 109.46547 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47177 * 300.00010 * 1 2 3 30 30 H 1.08996 * 109.46827 * 59.99546 * 1 2 3 31 31 H 1.08994 * 109.47289 * 65.00344 * 4 2 1 32 32 H 1.08998 * 109.47208 * 304.99805 * 4 2 1 33 33 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 34 34 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 35 35 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 36 36 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 37 37 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 38 38 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 39 39 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 40 40 H 0.97003 * 119.99519 * 265.00104 * 15 2 1 41 41 H 1.09000 * 109.46814 * 300.00058 * 18 16 15 42 42 H 1.09000 * 109.46975 * 59.99877 * 18 16 15 43 43 H 0.97001 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3397 2.7752 8 8 6.1520 -0.7203 2.0750 9 6 5.8753 -2.1283 3.9131 10 6 5.1310 -2.7898 4.8540 11 7 6.0006 -3.3581 5.6896 12 7 7.1981 -3.0901 5.3079 13 7 7.1837 -2.3543 4.2519 14 6 8.3586 -1.8479 3.5383 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1585 -2.4117 18 6 2.6490 -0.7286 -3.5877 19 16 2.7092 0.4343 -4.9734 20 6 3.3126 -0.6308 -6.2408 21 1 3.5220 -1.6672 -6.0208 22 6 3.5188 -0.1378 -7.5218 23 7 3.2632 1.1253 -7.7900 24 14 4.1578 -1.2672 -8.8655 25 1 3.2065 -2.3904 -9.0622 26 1 4.2902 -0.5037 -10.1323 27 1 5.4843 -1.8054 -8.4704 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -1.7715 1.2055 32 1 1.6054 -0.2617 2.1369 33 1 3.8532 0.4370 1.3574 34 1 3.9995 -1.0727 0.4259 35 1 3.4259 -1.7359 3.1105 36 1 4.0535 -2.8374 4.9105 37 1 8.6871 -0.9145 3.9956 38 1 9.1621 -2.5823 3.5941 39 1 8.1009 -1.6700 2.4943 40 1 2.2491 -1.6317 -1.1526 41 1 3.6481 -1.1211 -3.3986 42 1 1.9761 -1.5504 -3.8326 43 1 3.4076 1.4699 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076334597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = 18.725168 kcal Electronic energy + Delta-G solvation = -26023.296836 eV Core-core repulsion = 22039.100084 eV Total energy + Delta-G solvation = -3984.196752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.78748 -40.13123 -39.42338 -36.81585 -35.36599 -34.69228 -32.45131 -32.40925 -31.62435 -29.46734 -28.56404 -28.42997 -25.50180 -25.04924 -23.57998 -22.47317 -21.76499 -20.93192 -20.39688 -18.68949 -17.85424 -17.32130 -17.20215 -16.67708 -16.49044 -16.03143 -15.63572 -15.17988 -14.89176 -14.81717 -14.58198 -14.38803 -13.88366 -13.80281 -13.67698 -13.46898 -13.28439 -12.98926 -12.68314 -12.55939 -12.22939 -12.00344 -11.91788 -11.69203 -11.58956 -11.17516 -11.05887 -11.04921 -10.78196 -10.73612 -10.61806 -10.06219 -9.83974 -9.64228 -9.43030 -9.08038 -8.97828 -8.25938 -6.51501 -6.22870 -3.93580 0.41740 1.57633 1.80307 2.52022 2.56845 2.99356 3.05299 3.22380 3.26361 3.29447 3.66998 3.75504 3.94293 4.19232 4.22776 4.30839 4.41585 4.56390 4.58531 4.61615 4.93653 5.10190 5.11130 5.11951 5.12670 5.22958 5.25518 5.38843 5.45173 5.53090 5.57045 5.63782 5.79030 5.84548 5.86064 5.93679 6.10687 6.12605 6.58950 6.77896 7.47810 7.57829 7.64512 7.84088 8.33605 8.57046 9.22358 10.84454 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.002038 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.235442 B =13735.866461 C =15356.283905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.118 3.882 6 N -0.712 5.712 7 C 0.594 3.406 8 O -0.527 6.527 9 C -0.071 4.071 10 C 0.001 3.999 11 N -0.273 5.273 12 N -0.058 5.058 13 N -0.252 5.252 14 C 0.073 3.927 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.199 0.801 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -8.198 26.051 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.378 3.622 8 O -0.403 6.403 9 C -0.206 4.206 10 C -0.160 4.160 11 N -0.136 5.136 12 N -0.039 5.039 13 N -0.049 5.049 14 C -0.067 4.067 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.239 0.761 36 H 0.215 0.785 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.991 -6.317 26.301 27.123 hybrid contribution -0.018 -2.220 -1.303 2.574 sum 1.973 -8.538 24.999 26.490 Atomic orbital electron populations 1.22174 0.94890 1.02171 1.02919 1.20771 0.94275 0.97745 0.83085 0.88970 1.22125 0.94054 1.02372 0.99128 1.21550 0.94021 0.98299 0.86618 1.45642 1.06172 1.56977 1.27586 1.16668 0.83049 0.80260 0.82257 1.90861 1.55729 1.43694 1.49978 1.21953 0.85528 1.09792 1.03303 1.23892 1.01458 0.98094 0.92544 1.74918 0.94911 1.20240 1.23487 1.78324 1.17726 1.08722 0.99160 1.47701 1.07131 1.31515 1.18544 1.22636 0.84091 1.01257 0.98750 1.46138 1.69583 1.13864 1.09598 1.20299 0.76724 0.87218 0.83748 1.90704 1.48122 1.15746 1.84350 1.23540 1.03648 1.04890 0.98439 1.85390 1.86287 1.12881 0.98724 1.22821 1.51120 0.98114 0.96389 0.91007 1.24990 0.95091 0.95547 0.97954 1.70006 1.45420 1.13210 1.21626 0.86228 0.79315 0.80014 0.79963 1.19951 1.20804 1.19945 0.92481 0.91811 0.91383 0.90359 0.89460 0.90384 0.90359 0.76113 0.78465 0.88362 0.87792 0.86323 0.76923 0.89276 0.89268 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.34 2.57 -67.93 -0.17 1.17 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.83 5.57 -4.04 -0.02 0.81 16 6 N -0.71 -4.03 5.55 -61.44 -0.34 -4.37 16 7 C 0.59 5.10 7.79 -12.61 -0.10 5.00 16 8 O -0.53 -6.31 14.85 5.27 0.08 -6.23 16 9 C -0.07 -0.58 6.98 -82.33 -0.57 -1.15 16 10 C 0.00 0.01 11.54 -17.36 -0.20 -0.19 16 11 N -0.27 -2.77 12.35 30.47 0.38 -2.39 16 12 N -0.06 -0.60 13.14 60.35 0.79 0.19 16 13 N -0.25 -2.20 3.79 -64.13 -0.24 -2.44 16 14 C 0.07 0.42 10.98 59.84 0.66 1.08 16 15 N -0.74 -8.37 4.53 -53.80 -0.24 -8.61 16 16 C 0.53 9.24 7.81 -10.99 -0.09 9.16 16 17 O -0.52 -11.04 15.52 5.56 0.09 -10.95 16 18 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 24 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 35 H 0.40 0.96 7.51 -40.82 -0.31 0.65 16 36 H 0.20 0.48 7.56 -52.49 -0.40 0.09 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.12 0.79 6.36 -51.93 -0.33 0.46 16 40 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -38.48 386.04 -5.99 -44.47 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.95 Total: -1.00 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 0.14 Total: -1.67 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.08 Total: -42.89 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.16 Total: -17.18 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.48 -5.99 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076334597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.193 kcal (2) G-P(sol) polarization free energy of solvation -38.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds